Clone Sequence Records
BS11777.3prime Sequence
846 bp (737 high quality bases) assembled on 2006-06-16
> BS11777.3prime
ATGGTCTAGAAAGCTTTTAGTCATCTTCATCACTAAGCTCATCCTCCTCC
TTTCTTCTGGACTTTTGCTCCAGTTCCTTGGCGTAGAGATCCTTGAAGGC
TTCGTATTCCGGCAGGGTGACGTGGCAAATCTTTGTGGCGAAACTCTTCT
CGGAAGTGTCTGTAATCTGATAGAGTTTGGGGTTCGTAGTCGGCTCATTT
GGATCGGCTTTCGGAGGTCGTGGCTTAAAGAGGCCCAAACGAAGCAGGAA
CTGGTGGCGACAACGCAGCTCCTCGAATGACAAGGTAAGGGCTGCCGATT
TAACCAACTCCGGCACTTCTATGCGCATCACGTCTGTGATGAAGTTCAGT
TTCTCCTCAATAGATACCTCGGATTGTGCTATCAAATCCGGACTGTTCAT
CAAACACTTCCACACATTTTTGCTGGTGGAGACGCGACTTTGAAGGAAGC
CGATGTGGGAAAGTAACTGGTGGGAGTCGCTAACGTCCAGTAACTCGGGG
TACTTCGTAAGGAGCAGGTGCAGTAGATTCTCGCCGAATTGACAGGCCCT
CCAGATTTCCAGGCAGCTTATTATTTTGTCCGGCGTTCTTTTCAAAATCG
CGGGGTTACCGGTAACTATTCTAAGGAAATTCACGGTTTCCAAGCCGTGG
TTTTGAAAAGTTTGATGGGCCCTTCGCCAGATTTCAGGTGAGAATACAGC
TAACGTGGGTTCTATTTTGATGGCTTCATCGATGTGAATTTGTTCAAGCT
GCAATATCTTGGGCGTTGCCAAGTGCCTTATGTGATGTAAGTTTGACTGT
TGTTTTATTACAGCTTGTGTGTTAAATAATAGTTTCCGCAACATGT
BS11777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15390-PA | 828 | CG15390-RA | 1..828 | 844..17 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15390-RA | 929 | CG15390-RA | 44..871 | 844..17 | 4125 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2374866..2375639 | 790..17 | 3870 | 100 | Minus |
2L | 23513712 | 2L | 2374756..2374809 | 844..791 | 255 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:09:10 has no hits.
BS11777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:20 Download gff for
BS11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-PA | 1..828 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:35 Download gff for
BS11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 42..875 | 11..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:06 Download gff for
BS11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 42..875 | 11..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:06 Download gff for
BS11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2374754..2374809 | 791..846 | 96 | -> | Minus |
2L | 2374866..2375643 | 11..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:35 Download gff for
BS11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2374754..2374809 | 791..846 | 96 | -> | Minus |
arm_2L | 2374866..2375643 | 11..790 | 99 | | Minus |
BS11777.5prime Sequence
858 bp (746 high quality bases) assembled on 2006-06-16
> BS11777.5prime
GAAGTTATCAGTCGACATGTTGCGGAAACTATTATTTAACACACAAGCTG
TATTAAAACAACAGTCAAACTTACATCACATAAGGCACTTGGCAACGCCC
AAGATATTGCAGCTTGAACAAATTCACATCGATGAAGCCATCAAAATAGA
ACCCACGTTAGCTGTATTCTCACCTGAAATCTGGCGAAGGGCCCATCAAA
CTTTTCAAAACCACGGCTTGGAAACCGTGAATTTCCTTAGAATAGTTACC
GGTAACCCCGCGATTTTGAAAAGAACGCCGGACAAAATAATAAGCTGCCT
GGAAATCTGGAGGGCCTGTCAATTCGGCGAGAATCTACTGCACCTGCTCC
TTACGAAGTACCCCGAGTTACTGGACGTTAGCGACTCCCACCAGTTACTT
TCCCACATCGGCTTCCTTCAAAGTCGCGTCTCCACCAGCAAAAATGTGTG
GAAGTGTTTGATGAACAGTCCGGATTTGATAGCACAATCCGAGGTATCTA
TTGAGGAGAAACTGAACTTCATCACAGACGTGATGCGCATAGAAGTGCCG
GAGTTGGTTAAATCGGCAGCCCTTACCTTGTCATTCGAGGAGCTGCGTTG
TCGCCACCAGTTCCTGCTTCGTTTGGGCCTCTTTAAGCCACGACCTCCGA
AAGCCGATCCAAATGAGCCGACTACGAACCCCAAACTCTATCAGATTACA
GACACTTCCGAGAAGAGTTTCGCCACAAAGATTTGCCACGTCACCCTGAC
GGAATACGAAGCCTTCAAGGATCTCTACGCCAAGGAACTGGAGCAAAAGT
CCAGAAGAAAGGAAGAGGATGAGCTTAGTGATGAAGATGACTAAAAGCTT
TCTAGACC
BS11777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15390-PA | 828 | CG15390-RA | 1..828 | 17..844 | 4090 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15390-RA | 929 | CG15390-RA | 44..871 | 17..844 | 4110 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2374866..2375639 | 71..844 | 3840 | 99.7 | Plus |
2L | 23513712 | 2L | 2374756..2374809 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:22:11 has no hits.
BS11777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:20 Download gff for
BS11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:20:54 Download gff for
BS11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 44..875 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:55 Download gff for
BS11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 44..875 | 17..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:55 Download gff for
BS11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2374756..2374809 | 17..70 | 100 | -> | Plus |
2L | 2374866..2375643 | 71..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:20:54 Download gff for
BS11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2374756..2374809 | 17..70 | 100 | -> | Plus |
arm_2L | 2374866..2375643 | 71..850 | 99 | | Plus |
BS11777.complete Sequence
860 bp assembled on 2006-11-01
GenBank Submission: FJ636967
> BS11777.complete
GAAGTTATCAGTCGACATGTTGCGGAAACTATTATTTAACACACAAGCTG
TATTAAAACAACAGTCAAACTTACATCACATAAGGCACTTGGCAACGCCC
AAGATATTGCAGCTTGAACAAATTCACATCGATGAAGCCATCAAAATAGA
ACCCACGTTAGCTGTATTCTCACCTGAAATCTGGCGAAGGGCCCATCAAA
CTTTTCAAAACCACGGCTTGGAAACCGTGAATTTCCTTAGAATAGTTACC
GGTAACCCCGCGATTTTGAAAAGAACGCCGGACAAAATAATAAGCTGCCT
GGAAATCTGGAGGGCCTGTCAATTCGGCGAGAATCTACTGCACCTGCTCC
TTACGAAGTACCCCGAGTTACTGGACGTTAGCGACTCCCACCAGTTACTT
TCCCACATCGGCTTCCTTCAAAGTCGCGTCTCCACCAGCAAAAATGTGTG
GAAGTGTTTGATGAACAGTCCGGATTTGATAGCACAATCCGAGGTATCTA
TTGAGGAGAAACTGAACTTCATCACAGACGTGATGCGCATAGAAGTGCCG
GAGTTGGTTAAATCGGCAGCCCTTACCTTGTCATTCGAGGAGCTGCGTTG
TCGCCACCAGTTCCTGCTTCGTTTGGGCCTCTTTAAGCCACGACCTCCGA
AAGCCGATCCAAATGAGCCGACTACGAACCCCAAACTCTATCAGATTACA
GACACTTCCGAGAAGAGTTTCGCCACAAAGATTTGCCACGTCACCCTGCC
GGAATACGAAGCCTTCAAGGATCTCTACGCCAAGGAACTGGAGCAAAAGT
CCAGAAGAAAGGAGGAGGATGAGCTTAGTGATGAAGATGACTAAAAGCTT
TCTAGACCAT
BS11777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15390-RA | 828 | CG15390-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15390-RA | 929 | CG15390-RA | 44..871 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2374866..2375639 | 71..844 | 3870 | 100 | Plus |
2L | 23513712 | 2L | 2374756..2374809 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:25:07 has no hits.
BS11777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:05 Download gff for
BS11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:52 Download gff for
BS11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 68..899 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:33 Download gff for
BS11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 49..869 | 22..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:06 Download gff for
BS11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 68..899 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:01 Download gff for
BS11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15390-RA | 49..869 | 22..842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:01 Download gff for
BS11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2374761..2374809 | 22..70 | 100 | -> | Plus |
2L | 2374866..2375637 | 71..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:33 Download gff for
BS11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2374761..2374809 | 22..70 | 100 | -> | Plus |
arm_2L | 2374866..2375637 | 71..842 | 100 | | Plus |
BS11777.pep Sequence
Translation from 16 to 843
> BS11777.pep
MLRKLLFNTQAVLKQQSNLHHIRHLATPKILQLEQIHIDEAIKIEPTLAV
FSPEIWRRAHQTFQNHGLETVNFLRIVTGNPAILKRTPDKIISCLEIWRA
CQFGENLLHLLLTKYPELLDVSDSHQLLSHIGFLQSRVSTSKNVWKCLMN
SPDLIAQSEVSIEEKLNFITDVMRIEVPELVKSAALTLSFEELRCRHQFL
LRLGLFKPRPPKADPNEPTTNPKLYQITDTSEKSFATKICHVTLPEYEAF
KDLYAKELEQKSRRKEEDELSDEDD*
BS11777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15390-PA | 275 | CG15390-PA | 1..275 | 1..275 | 1423 | 100 | Plus |