Clone BS11777 Report

Search the DGRC for BS11777

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG15390-RA
Protein status:BS11777.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11777.3prime Sequence

846 bp (737 high quality bases) assembled on 2006-06-16

> BS11777.3prime
ATGGTCTAGAAAGCTTTTAGTCATCTTCATCACTAAGCTCATCCTCCTCC
TTTCTTCTGGACTTTTGCTCCAGTTCCTTGGCGTAGAGATCCTTGAAGGC
TTCGTATTCCGGCAGGGTGACGTGGCAAATCTTTGTGGCGAAACTCTTCT
CGGAAGTGTCTGTAATCTGATAGAGTTTGGGGTTCGTAGTCGGCTCATTT
GGATCGGCTTTCGGAGGTCGTGGCTTAAAGAGGCCCAAACGAAGCAGGAA
CTGGTGGCGACAACGCAGCTCCTCGAATGACAAGGTAAGGGCTGCCGATT
TAACCAACTCCGGCACTTCTATGCGCATCACGTCTGTGATGAAGTTCAGT
TTCTCCTCAATAGATACCTCGGATTGTGCTATCAAATCCGGACTGTTCAT
CAAACACTTCCACACATTTTTGCTGGTGGAGACGCGACTTTGAAGGAAGC
CGATGTGGGAAAGTAACTGGTGGGAGTCGCTAACGTCCAGTAACTCGGGG
TACTTCGTAAGGAGCAGGTGCAGTAGATTCTCGCCGAATTGACAGGCCCT
CCAGATTTCCAGGCAGCTTATTATTTTGTCCGGCGTTCTTTTCAAAATCG
CGGGGTTACCGGTAACTATTCTAAGGAAATTCACGGTTTCCAAGCCGTGG
TTTTGAAAAGTTTGATGGGCCCTTCGCCAGATTTCAGGTGAGAATACAGC
TAACGTGGGTTCTATTTTGATGGCTTCATCGATGTGAATTTGTTCAAGCT
GCAATATCTTGGGCGTTGCCAAGTGCCTTATGTGATGTAAGTTTGACTGT
TGTTTTATTACAGCTTGTGTGTTAAATAATAGTTTCCGCAACATGT

BS11777.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15390-PA 828 CG15390-RA 1..828 844..17 4115 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15390-RA 929 CG15390-RA 44..871 844..17 4125 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2374866..2375639 790..17 3870 100 Minus
2L 23513712 2L 2374756..2374809 844..791 255 98.1 Minus
Blast to na_te.dros performed on 2015-02-06 10:09:10 has no hits.

BS11777.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:20 Download gff for BS11777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15390-PA 1..828 17..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:35 Download gff for BS11777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 42..875 11..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:06 Download gff for BS11777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 42..875 11..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:06 Download gff for BS11777.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2374754..2374809 791..846 96 -> Minus
2L 2374866..2375643 11..790 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:35 Download gff for BS11777.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2374754..2374809 791..846 96 -> Minus
arm_2L 2374866..2375643 11..790 99   Minus

BS11777.5prime Sequence

858 bp (746 high quality bases) assembled on 2006-06-16

> BS11777.5prime
GAAGTTATCAGTCGACATGTTGCGGAAACTATTATTTAACACACAAGCTG
TATTAAAACAACAGTCAAACTTACATCACATAAGGCACTTGGCAACGCCC
AAGATATTGCAGCTTGAACAAATTCACATCGATGAAGCCATCAAAATAGA
ACCCACGTTAGCTGTATTCTCACCTGAAATCTGGCGAAGGGCCCATCAAA
CTTTTCAAAACCACGGCTTGGAAACCGTGAATTTCCTTAGAATAGTTACC
GGTAACCCCGCGATTTTGAAAAGAACGCCGGACAAAATAATAAGCTGCCT
GGAAATCTGGAGGGCCTGTCAATTCGGCGAGAATCTACTGCACCTGCTCC
TTACGAAGTACCCCGAGTTACTGGACGTTAGCGACTCCCACCAGTTACTT
TCCCACATCGGCTTCCTTCAAAGTCGCGTCTCCACCAGCAAAAATGTGTG
GAAGTGTTTGATGAACAGTCCGGATTTGATAGCACAATCCGAGGTATCTA
TTGAGGAGAAACTGAACTTCATCACAGACGTGATGCGCATAGAAGTGCCG
GAGTTGGTTAAATCGGCAGCCCTTACCTTGTCATTCGAGGAGCTGCGTTG
TCGCCACCAGTTCCTGCTTCGTTTGGGCCTCTTTAAGCCACGACCTCCGA
AAGCCGATCCAAATGAGCCGACTACGAACCCCAAACTCTATCAGATTACA
GACACTTCCGAGAAGAGTTTCGCCACAAAGATTTGCCACGTCACCCTGAC
GGAATACGAAGCCTTCAAGGATCTCTACGCCAAGGAACTGGAGCAAAAGT
CCAGAAGAAAGGAAGAGGATGAGCTTAGTGATGAAGATGACTAAAAGCTT
TCTAGACC

BS11777.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15390-PA 828 CG15390-RA 1..828 17..844 4090 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15390-RA 929 CG15390-RA 44..871 17..844 4110 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2374866..2375639 71..844 3840 99.7 Plus
2L 23513712 2L 2374756..2374809 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:22:11 has no hits.

BS11777.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:20 Download gff for BS11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15390-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:20:54 Download gff for BS11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 44..875 17..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:55 Download gff for BS11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 44..875 17..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:55 Download gff for BS11777.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2374756..2374809 17..70 100 -> Plus
2L 2374866..2375643 71..850 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:20:54 Download gff for BS11777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2374756..2374809 17..70 100 -> Plus
arm_2L 2374866..2375643 71..850 99   Plus

BS11777.complete Sequence

860 bp assembled on 2006-11-01

GenBank Submission: FJ636967

> BS11777.complete
GAAGTTATCAGTCGACATGTTGCGGAAACTATTATTTAACACACAAGCTG
TATTAAAACAACAGTCAAACTTACATCACATAAGGCACTTGGCAACGCCC
AAGATATTGCAGCTTGAACAAATTCACATCGATGAAGCCATCAAAATAGA
ACCCACGTTAGCTGTATTCTCACCTGAAATCTGGCGAAGGGCCCATCAAA
CTTTTCAAAACCACGGCTTGGAAACCGTGAATTTCCTTAGAATAGTTACC
GGTAACCCCGCGATTTTGAAAAGAACGCCGGACAAAATAATAAGCTGCCT
GGAAATCTGGAGGGCCTGTCAATTCGGCGAGAATCTACTGCACCTGCTCC
TTACGAAGTACCCCGAGTTACTGGACGTTAGCGACTCCCACCAGTTACTT
TCCCACATCGGCTTCCTTCAAAGTCGCGTCTCCACCAGCAAAAATGTGTG
GAAGTGTTTGATGAACAGTCCGGATTTGATAGCACAATCCGAGGTATCTA
TTGAGGAGAAACTGAACTTCATCACAGACGTGATGCGCATAGAAGTGCCG
GAGTTGGTTAAATCGGCAGCCCTTACCTTGTCATTCGAGGAGCTGCGTTG
TCGCCACCAGTTCCTGCTTCGTTTGGGCCTCTTTAAGCCACGACCTCCGA
AAGCCGATCCAAATGAGCCGACTACGAACCCCAAACTCTATCAGATTACA
GACACTTCCGAGAAGAGTTTCGCCACAAAGATTTGCCACGTCACCCTGCC
GGAATACGAAGCCTTCAAGGATCTCTACGCCAAGGAACTGGAGCAAAAGT
CCAGAAGAAAGGAGGAGGATGAGCTTAGTGATGAAGATGACTAAAAGCTT
TCTAGACCAT

BS11777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15390-RA 828 CG15390-PA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15390-RA 929 CG15390-RA 44..871 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2374866..2375639 71..844 3870 100 Plus
2L 23513712 2L 2374756..2374809 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:25:07 has no hits.

BS11777.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:05 Download gff for BS11777.complete
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:52 Download gff for BS11777.complete
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 68..899 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:33 Download gff for BS11777.complete
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 49..869 22..842 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:06 Download gff for BS11777.complete
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 68..899 17..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:01 Download gff for BS11777.complete
Subject Subject Range Query Range Percent Splice Strand
CG15390-RA 49..869 22..842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:01 Download gff for BS11777.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2374761..2374809 22..70 100 -> Plus
2L 2374866..2375637 71..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:33 Download gff for BS11777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2374761..2374809 22..70 100 -> Plus
arm_2L 2374866..2375637 71..842 100   Plus

BS11777.pep Sequence

Translation from 16 to 843

> BS11777.pep
MLRKLLFNTQAVLKQQSNLHHIRHLATPKILQLEQIHIDEAIKIEPTLAV
FSPEIWRRAHQTFQNHGLETVNFLRIVTGNPAILKRTPDKIISCLEIWRA
CQFGENLLHLLLTKYPELLDVSDSHQLLSHIGFLQSRVSTSKNVWKCLMN
SPDLIAQSEVSIEEKLNFITDVMRIEVPELVKSAALTLSFEELRCRHQFL
LRLGLFKPRPPKADPNEPTTNPKLYQITDTSEKSFATKICHVTLPEYEAF
KDLYAKELEQKSRRKEEDELSDEDD*

BS11777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15390-PA 275 CG15390-PA 1..275 1..275 1423 100 Plus