BS11778.complete Sequence
998 bp assembled on 2006-11-01
GenBank Submission: FJ636968
> BS11778.complete
GAAGTTATCAGTCGACATGGTTTTAACACCAACGAAAGATGGGCCCGACC
AGGAGAGCATGCCGTTGCCGGCCGACAATGGGGAGTCACCAAGTAAACAG
CAGGCCCCTGTCAATCGGGATGAGATGCACTACTTGGATCTTCTGAGGCA
CATCATCGCAAATGGAGAGCAGCGGATGGACCGCACGGAGGTGGGCACTC
TGTCCGTGTTCGGCAGTCAGATGCGCTTCGACATGCGGAACTCCTTTCCT
TTGCTGACCACGAAGCGCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCT
GTGGTTCGTGGCGGGCAAGACGGACGCCAAGCTGCTGCAGGCGAAGAATG
TGCACATCTGGGATGGGAACAGCTCCAGAGAATTTCTGGACAAGATGGGG
TTCACGGGGCGAGCCGTTGGGGATCTGGGGCCGGTGTACGGCTTCCAATG
GAGGCATTTCGGGGCGCAGTACGGCACCTGCGACGACGACTACAGCGGCA
AGGGGATCGACCAGCTGCGCCAGGTGATCGACACCATCAGGAATAACCCC
TCAGACCGTCGCATCATCATGTCGGCTTGGAATCCACTGGACATCCCAAA
GATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGA
AGCGCGGTGAGCTTTCGTGCCAGCTATACCAGAGAAGCGCAGACATGGGC
CTGGGCGTACCCTTCAACATCGCCTCCTATGCCCTGCTCACCCACATGAT
TGCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCATGGGCG
ACACACACGTCTACCTGAACCACGTAGAGCCGCTGAAGGAGCAACTGGAG
CGCACACCGCGACCCTTTCCCAAGCTGATCATTAAACGTCAGGTGCAGGA
CATCGAGGACTTCCGCTTCGAGGACTTTCAGATAGTCGACTACAATCCAC
ATCCAAAAATCCAAATGGACATGGCCGTGTAGAAGCTTTCTAGACCAT
BS11778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-RB | 966 | CG3181-PB | 1..966 | 17..982 | 4830 | 100 | Plus |
| Ts-RA | 966 | CG3181-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-RB | 1136 | CG3181-RB | 65..1034 | 13..982 | 4835 | 99.9 | Plus |
| Ts-RA | 1346 | CG3181-RA | 65..1034 | 13..982 | 4835 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2968605..2969574 | 982..13 | 4835 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:22:31 has no hits.
BS11778.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:07 Download gff for
BS11778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:54 Download gff for
BS11778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 38..1018 | 5..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:21 Download gff for
BS11778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 69..1034 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:07 Download gff for
BS11778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 38..1018 | 5..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:03 Download gff for
BS11778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 69..1034 | 17..982 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:03 Download gff for
BS11778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2968605..2969570 | 17..982 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:21 Download gff for
BS11778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2968605..2969570 | 17..982 | 100 | | Minus |
BS11778.pep Sequence
Translation from 16 to 981
> BS11778.pep
MVLTPTKDGPDQESMPLPADNGESPSKQQAPVNRDEMHYLDLLRHIIANG
EQRMDRTEVGTLSVFGSQMRFDMRNSFPLLTTKRVFFRAVAEELLWFVAG
KTDAKLLQAKNVHIWDGNSSREFLDKMGFTGRAVGDLGPVYGFQWRHFGA
QYGTCDDDYSGKGIDQLRQVIDTIRNNPSDRRIIMSAWNPLDIPKMALPP
CHCLAQFYVSEKRGELSCQLYQRSADMGLGVPFNIASYALLTHMIAHVTG
LKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQVQDIEDFR
FEDFQIVDYNPHPKIQMDMAV*
BS11778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-PB | 321 | CG3181-PB | 1..321 | 1..321 | 1718 | 100 | Plus |
| Ts-PA | 321 | CG3181-PA | 1..321 | 1..321 | 1718 | 100 | Plus |
