Clone Sequence Records
BS11783.3prime Sequence
531 bp (531 high quality bases) assembled on 2006-06-16
> BS11783.3prime
ATGGTCTAGAAAGCTTCTAGAATATATCGCTGCCCGTCTTTCGAGCGCGT
TGCAAGGCCTCCTCCGGAGTCAGTTGCTCATTGACCGAGGGCTCCTTGGC
GCTGCCGTCCTTCTGCAGTTTTCCCGCCTTGAAATCTTCGATAATCTTCT
GCGAGTAGACGGCGTTGAAGAGATCCAAGCTGGTGAACTCCGACTGGACG
ACGTCCGGCGCCTTATAGGACACGTATGGCTTTAGCTTACAACCGGTCAA
ATCGGGAACTATGATGTCCGGAATTTTCTCGGGAATCTCCACATACTGCC
CGTCGACAAGTATGCCCGTGTCTCGTACACCTCGCTTGTGAATGGCTACC
GGCGGATTGGCCAGTGTTTTCTGGGCTTCCTTTACCACGCGCGTACCGCG
CTTGTTGTATGCGTTAAATTTACGGAAGTTCCGCTTGCCCTCCAGCACGG
ATGAAGTACTGATGGTCCTCTGCTGGCACCTTAGGGCAATGGGCACTACT
TTAATACAATTATTCATGTCGACTGATAACT
BS11783.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12954-PA | 501 | mRpL41-RA | 1..501 | 517..17 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL41-RA | 594 | CG12954-RA | 54..555 | 517..16 | 2510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15217063..15217564 | 16..517 | 2510 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 3431..3568 | 228..89 | 118 | 55.7 | Minus |
BS11783.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:23 Download gff for
BS11783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12954-PA | 1..501 | 17..517 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:00 Download gff for
BS11783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 52..555 | 16..520 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:23 Download gff for
BS11783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 52..555 | 16..520 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:23 Download gff for
BS11783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15217063..15217566 | 16..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:00 Download gff for
BS11783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11104568..11105071 | 16..520 | 99 | | Plus |
BS11783.5prime Sequence
531 bp (531 high quality bases) assembled on 2006-06-16
> BS11783.5prime
GAAGTTATCAGTCGACATGAATAATTGTATTAAAGTAGTGCCCATTGCCC
TAAGGTGCCAGCAGAGGACCATCAGTACTTCATCCGTGCTGGAGGGCAAG
CGGAACTTCCGTAAATTTAACGCATACAACAAGCGCGGTACGCGCGTGGT
AAAGGAAGCCCAGAAAACACTGGCCAATCCGCCGGTAGCCATTCACAAGC
GAGGTGTACGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATT
CCCGAGAAAATTCCGGACATCATAGTTCCCGATTTGACCGGTTGTAAGCT
AAAGCCATACGTGTCCTATAAGGCGCCGGACGTCGTCCAGTCGGAGTTCA
CCAGCTTGGATCTCTTCAACGCCGTCTACTCGCAGAAGATTATCGAAGAT
TTCAAGGCGGGAAAACTGCAGAAGGACGGCAGCGCCAAGGAGCCCTCGGT
CAATGAGCAACTGACTCCGGAGGAGGCCTTGCAACGCGCTCGAAAGACGG
GCAGCGATATATTCTAGAAGCTTTCTAGACC
BS11783.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12954-PA | 501 | mRpL41-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL41-RA | 594 | CG12954-RA | 54..555 | 17..518 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15217063..15217564 | 518..17 | 2510 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 3431..3568 | 306..445 | 118 | 55.7 | Plus |
BS11783.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:23 Download gff for
BS11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12954-PA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:32 Download gff for
BS11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 52..555 | 14..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:05 Download gff for
BS11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 52..555 | 14..518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:05 Download gff for
BS11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15217063..15217566 | 14..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:32 Download gff for
BS11783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11104568..11105071 | 14..518 | 99 | | Minus |
BS11783.complete Sequence
533 bp assembled on 2006-11-01
GenBank Submission: FJ636969
> BS11783.complete
GAAGTTATCAGTCGACATGAATAATTGTATTAAAGTAGTGCCCATTGCCC
TAAGGTGCCAGCAGAGGACCATCAGTACTTCATCCGTGCTGGAGGGCAAG
CGGAACTTCCGTAAATTTAACGCATACAACAAGCGCGGTACGCGCGTGGT
AAAGGAAGCCCAGAAAACACTGGCCAATCCGCCGGTAGCCATTCACAAGC
GAGGTGTACGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATT
CCCGAGAAAATTCCGGACATCATAGTTCCCGATTTGACCGGTTGTAAGCT
AAAGCCATACGTGTCCTATAAGGCGCCGGACGTCGTCCAGTCGGAGTTCA
CCAGCTTGGATCTCTTCAACGCCGTCTACTCGCAGAAGATTATCGAAGAT
TTCAAGGCGGGAAAACTGCAGAAGGACGGCAGCGCCAAGGAGCCCTCGGT
CAATGAGCAACTGACTCCGGAGGAGGCCTTGCAACGCGCTCGAAAGACGG
GCAGCGATATATTCTAGAAGCTTTCTAGACCAT
BS11783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL41-RA | 501 | CG12954-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL41-RA | 594 | CG12954-RA | 54..555 | 17..518 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15217063..15217564 | 518..17 | 2510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 12:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 3431..3568 | 306..445 | 118 | 55.7 | Plus |
BS11783.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:08 Download gff for
BS11783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:55 Download gff for
BS11783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 48..551 | 14..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:01 Download gff for
BS11783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 54..554 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:08 Download gff for
BS11783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 48..551 | 14..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:21 Download gff for
BS11783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 54..554 | 17..517 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:21 Download gff for
BS11783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15217064..15217564 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:01 Download gff for
BS11783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11104569..11105069 | 17..517 | 100 | | Minus |
BS11783.pep Sequence
Translation from 16 to 516
> BS11783.pep
MNNCIKVVPIALRCQQRTISTSSVLEGKRNFRKFNAYNKRGTRVVKEAQK
TLANPPVAIHKRGVRDTGILVDGQYVEIPEKIPDIIVPDLTGCKLKPYVS
YKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQKDGSAKEPSVNEQLT
PEEALQRARKTGSDIF*
BS11783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL41-PA | 166 | CG12954-PA | 1..166 | 1..166 | 848 | 100 | Plus |
