Clone BS11786 Report

Search the DGRC for BS11786

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG13298-RA
Protein status:BS11786.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11786.5prime Sequence

396 bp (396 high quality bases) assembled on 2006-06-16

> BS11786.5prime
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTTAGAAGCTTTCTAGACC

BS11786.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-PA 366 CG13298-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 920 CG13298-RA 195..565 14..384 1855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6192479..6192709 384..154 1155 100 Minus
3L 28110227 3L 6192776..6192894 153..35 595 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:37:25 has no hits.

BS11786.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:25 Download gff for BS11786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-PA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:33 Download gff for BS11786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..565 14..384 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:02 Download gff for BS11786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..565 14..384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:02 Download gff for BS11786.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6192479..6192709 154..384 100 <- Minus
3L 6192776..6192894 35..153 100 <- Minus
3L 6192965..6192985 14..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:33 Download gff for BS11786.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6185579..6185809 154..384 100 <- Minus
arm_3L 6185876..6185994 35..153 100 <- Minus
arm_3L 6186065..6186085 14..34 100   Minus

BS11786.3prime Sequence

396 bp (396 high quality bases) assembled on 2006-06-16

> BS11786.3prime
ATGGTCTAGAAAGCTTCTAAGGAGCTTCAGGCGTCTTCAGATTGTACTTG
GCCTTAATGTTGTTCAGTTCCTCCTGTTTCTTGTCCATGTCCACGCGCTT
GAAGGCCTTGTTGGATTGGTAGTAGAGCACCACCAGATAGCGATTGCACA
CATTAAAACCCGATAAATGGTCACAGGCGTTCTTGGCATCGAAAATGTCC
TCGTAGACGACAAAGGCGGTGCCACGCGTTTCCGGAGTGTTGCCTACGCG
TATCTGTCGAATGGCTCCAAATTTGCCGAATATGTCGTACATCTCGTCCG
AGGTGATTTTGTACGGCAGGTTCCGCACGTACAATAGCCGATTCACCTCT
GGCGGCAGGCGGATATGGTTGCGCTTGTTCATGTCGACTGATAACT

BS11786.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-PA 366 CG13298-RA 1..366 382..17 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 920 CG13298-RA 195..565 385..15 1855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6192479..6192709 15..245 1155 100 Plus
3L 28110227 3L 6192776..6192894 246..364 595 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:43:09 has no hits.

BS11786.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:25 Download gff for BS11786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-PA 1..366 17..382 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:15 Download gff for BS11786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..565 15..385 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:52 Download gff for BS11786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 195..565 15..385 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:52 Download gff for BS11786.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6192479..6192709 15..245 100 <- Plus
3L 6192776..6192894 246..364 100 <- Plus
3L 6192965..6192985 365..385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:15 Download gff for BS11786.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6185579..6185809 15..245 100 <- Plus
arm_3L 6185876..6185994 246..364 100 <- Plus
arm_3L 6186065..6186085 365..385 100   Plus

BS11786.complete Sequence

398 bp assembled on 2006-11-01

GenBank Submission: FJ636970

> BS11786.complete
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTTAGAAGCTTTCTAGACCAT

BS11786.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 366 CG13298-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-RA 920 CG13298-RA 195..565 14..384 1855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6192479..6192709 384..154 1155 100 Minus
3L 28110227 3L 6192776..6192894 153..35 595 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:36 has no hits.

BS11786.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:26 Download gff for BS11786.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:38 Download gff for BS11786.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 202..572 14..384 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:08 Download gff for BS11786.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 198..563 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:26 Download gff for BS11786.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 202..572 14..384 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:45 Download gff for BS11786.complete
Subject Subject Range Query Range Percent Splice Strand
CG13298-RA 198..563 17..382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:45 Download gff for BS11786.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6192481..6192709 154..382 100 <- Minus
3L 6192776..6192894 35..153 100 <- Minus
3L 6192965..6192982 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:08 Download gff for BS11786.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6185581..6185809 154..382 100 <- Minus
arm_3L 6185876..6185994 35..153 100 <- Minus
arm_3L 6186065..6186082 17..34 100   Minus

BS11786.pep Sequence

Translation from 16 to 381

> BS11786.pep
MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP
ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD
KKQEELNNIKAKYNLKTPEAP*

BS11786.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13298-PA 121 CG13298-PA 1..121 1..121 642 100 Plus