Clone Sequence Records
BS11786.5prime Sequence
396 bp (396 high quality bases) assembled on 2006-06-16
> BS11786.5prime
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTTAGAAGCTTTCTAGACC
BS11786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-PA | 366 | CG13298-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 920 | CG13298-RA | 195..565 | 14..384 | 1855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6192479..6192709 | 384..154 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 6192776..6192894 | 153..35 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:37:25 has no hits.
BS11786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:25 Download gff for
BS11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:33 Download gff for
BS11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..565 | 14..384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:02 Download gff for
BS11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..565 | 14..384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:02 Download gff for
BS11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6192479..6192709 | 154..384 | 100 | <- | Minus |
3L | 6192776..6192894 | 35..153 | 100 | <- | Minus |
3L | 6192965..6192985 | 14..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:33 Download gff for
BS11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6185579..6185809 | 154..384 | 100 | <- | Minus |
arm_3L | 6185876..6185994 | 35..153 | 100 | <- | Minus |
arm_3L | 6186065..6186085 | 14..34 | 100 | | Minus |
BS11786.3prime Sequence
396 bp (396 high quality bases) assembled on 2006-06-16
> BS11786.3prime
ATGGTCTAGAAAGCTTCTAAGGAGCTTCAGGCGTCTTCAGATTGTACTTG
GCCTTAATGTTGTTCAGTTCCTCCTGTTTCTTGTCCATGTCCACGCGCTT
GAAGGCCTTGTTGGATTGGTAGTAGAGCACCACCAGATAGCGATTGCACA
CATTAAAACCCGATAAATGGTCACAGGCGTTCTTGGCATCGAAAATGTCC
TCGTAGACGACAAAGGCGGTGCCACGCGTTTCCGGAGTGTTGCCTACGCG
TATCTGTCGAATGGCTCCAAATTTGCCGAATATGTCGTACATCTCGTCCG
AGGTGATTTTGTACGGCAGGTTCCGCACGTACAATAGCCGATTCACCTCT
GGCGGCAGGCGGATATGGTTGCGCTTGTTCATGTCGACTGATAACT
BS11786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-PA | 366 | CG13298-RA | 1..366 | 382..17 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 920 | CG13298-RA | 195..565 | 385..15 | 1855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6192479..6192709 | 15..245 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 6192776..6192894 | 246..364 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:43:09 has no hits.
BS11786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:25 Download gff for
BS11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:15 Download gff for
BS11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..565 | 15..385 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:52 Download gff for
BS11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 195..565 | 15..385 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:52 Download gff for
BS11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6192479..6192709 | 15..245 | 100 | <- | Plus |
3L | 6192776..6192894 | 246..364 | 100 | <- | Plus |
3L | 6192965..6192985 | 365..385 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:15 Download gff for
BS11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6185579..6185809 | 15..245 | 100 | <- | Plus |
arm_3L | 6185876..6185994 | 246..364 | 100 | <- | Plus |
arm_3L | 6186065..6186085 | 365..385 | 100 | | Plus |
BS11786.complete Sequence
398 bp assembled on 2006-11-01
GenBank Submission: FJ636970
> BS11786.complete
GAAGTTATCAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAG
AGGTGAATCGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCG
GACGAGATGTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACG
CGTAGGCAACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGG
ACATTTTCGATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTG
TGCAATCGCTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAA
GCGCGTGGACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCA
AGTACAATCTGAAGACGCCTGAAGCTCCTTAGAAGCTTTCTAGACCAT
BS11786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 366 | CG13298-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-RA | 920 | CG13298-RA | 195..565 | 14..384 | 1855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6192479..6192709 | 384..154 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 6192776..6192894 | 153..35 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:36 has no hits.
BS11786.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:26 Download gff for
BS11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:38 Download gff for
BS11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 202..572 | 14..384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:08 Download gff for
BS11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 198..563 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:26 Download gff for
BS11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 202..572 | 14..384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:45 Download gff for
BS11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13298-RA | 198..563 | 17..382 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:45 Download gff for
BS11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6192481..6192709 | 154..382 | 100 | <- | Minus |
3L | 6192776..6192894 | 35..153 | 100 | <- | Minus |
3L | 6192965..6192982 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:08 Download gff for
BS11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6185581..6185809 | 154..382 | 100 | <- | Minus |
arm_3L | 6185876..6185994 | 35..153 | 100 | <- | Minus |
arm_3L | 6186065..6186082 | 17..34 | 100 | | Minus |
BS11786.pep Sequence
Translation from 16 to 381
> BS11786.pep
MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP
ETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMD
KKQEELNNIKAKYNLKTPEAP*
BS11786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13298-PA | 121 | CG13298-PA | 1..121 | 1..121 | 642 | 100 | Plus |