Clone Sequence Records
BS11787.complete Sequence
2513 bp assembled on 2010-06-09
GenBank Submission: KX803139
> BS11787.complete
GAAGTTATCAGTCGACATGCAGCGCCAGAAACCCAAGGGACCCGGCAAAC
CGGGTTCGCGCTTCAAGCCGGGATCCGGCACGTTCAAAGGAGCTGGTGGT
GGCCGGAAAAGCGGCGACAACAGCCAGAAGCGTCCGCGCCAGGAGATCAA
CAAGTCGCGACTGGCCGCCACCGAAGCGGAGATCCAGGACCTCAAGACCA
AATACGCAGAGATCGATGCTACTGCCATTAAGAAGTTCGCCCAGTTTCCG
CTGTCCAAGAAGACCCAAAAGGCACTGGCGGAGTCCAAATTCGTGCATCC
CACGCAGGTGCAGCGGGACAGCATTGGACCCGCACTGCAGGGCAAGGATG
TGCTGGGCGCGGCCATCACAGGCAGTGGCAAGACACTGGCCTTTCTCATA
CCCGTTCTGGAGCATCTGTTCATGAACAAATGGTCGCGCACCGATGGCGT
TGGCGCTATCATCATCTCGCCCACCCGCGAGCTAGCCTACCAGATCTTCG
AGACCCTAAAGAAGGTGGGAAAGCACCACGACTTCTCCGCCGGCCTCATC
ATCGGAGGCAAGAACCTGAAGTTCGAGCGCACTCGCATGGACCAGTGCAA
CATACTGATCTGCACACCCGGAAGGCTGCTGCAGCACATGGACGAGAATC
CTCTCTTTAATACGAGCACCATGGAGATGTTGGTCCTGGATGAAGCCGAT
CGCTGTTTGGATATGGGTTTCCAGAAGACCCTGAATTCAATCATAGAAAA
TTTCCCACCAGTGCGTCAAACGCTGCTATTCTCGGCCACGCAAACGAATA
CGGTGCAGGATTTGGCGAGGCTTAATCTAAAGGATCCGGTCTACGTAGGC
TACGGAGGAGCGACGCCAAGAGAAGAGCCCAGCGCCAGCACGAAGAAGAC
TCCGAACACAGCTGTCTTGGCAGTTCCTGAGCTTTTGCAGCAGAGTTATG
TGGTGTTGAACCTGGAGGACAAGATCACCATGCTGTGGTCGTTCATCAAG
AACCATTTGAAGCAGAAGATCATTGTGTTCGTGGCCAGTTGCAAGCAGGC
CAAGTACCTGTACGAGATATTTTGTAAACTGCGGCCGGGTAGCCCGCTGC
TGGCTCTCTATGGAACGCTCCATCAGGATCGTCGCATTGCCATCTACGAG
GATTTCCTTCGCAAGAGCCACGTCGTTATGTTCTCCACTGATGTGGCATC
GCGCGGTCTGGACTTTCCTGCCGTCAATTGGGTGGTGCAGTTGGACTGCC
CGGAGGATGTTTCACAGTACATTCATCGAGCTGGACGATCTGCGCGGAAC
AAGACACGCGGCGAGTGTCTGTTGGTTTTGACACCCAGCGAGGAGGAGTA
CATGATTAGTGCGCTTAAGGAACAGTTGAATATCGACATTCGTTGTGTGC
AAATCGATCCCAAGAAGCTCTTCTCTCCGCGCGTCAAGATCGAGGCCTTT
CTGGCCCAATTTCCCGAACTGAGGGCAACCGCCCAGCGCGCCTTCCTCTC
CTACATAAAATCCGTATTCCTGATGCGCAACAAGCGCTTGTTTAATGTGT
TCAGCCTGGATCTAGATGCATTTGCCCAATCGCTCGGCTTGGCGGTTACG
CCGCGTGTTCCCTTCCTCGAAAAATTCCTGTGGCGCCAGAAGCAGCTACA
GCAGCAGAAAGAACAGGGTGATAACGCAAAATCGATCAATCCATTGCTCA
GCAAGCTGACCAAGCAGCAGAGCTTTGGCGGCGGTGACGAGGATGAAGAG
AACAGTGATGACGAAGACTTTATCAAGGTGAAACGTAAGGATCACGATGT
GGAAGGAGAGCCAGTGAAGCTGGACGAAGAGGATGACACTGAGAATGAGG
CAGAGGCCCCACTTGTGGTACCCAAGCGCGAGAAGCTGGTAACCAAGGCC
TCGCTGGCCAAGAAGGCGCTGAAGAAGAATCTGCAGGTCAACTCCAAGCT
GAAGTTCGATGACGAGGGCGAAACTATGGCAGATGATCGCAGCCAAATGA
AGGCCTTGAGTGCCAGGCAAAGAACAGTGAACCAAGACGACGACGATGGA
GGCATTAATCTAGTGCTGTCCAAGGCGCTACTCACCGAGGAGGATCAATA
TGACAAGCAGCGATTCCGGGAGCTGGTCAAGAAGCGCCACAAACTGCAGC
GCGAGAAGCTGCGGAAAAAGGCGGAGGAGGCCAAGGGCAGCGACGACGAA
GAGGAGCAACAGGACGATGACAATGCGGACGATGCTGGCAGTGAGAGTGA
CCATTCAGTGGACCTCTCCTGGCTGCCGGATCCCGATAAGGTTTACAAAA
ATAAGCCTAACGCTTCGGATCGAAATGAATCCAAATCAGAGTCCAGCGAT
GCATCCGATGACGAGAAAGCTGACGACAGCGACGGCGACGACGACGACGT
CTCCGACGATGAACCCGCCTACAAAAAGTCCAAGCTGACGAACAAGATGA
CTCTAATGGACACGGAGGCCATAGCGGCCAGTCTTTTGGGTAGCTAAAAG
CTTTCTAGACCAT
BS11787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2481 | CG5800-PA | 1..2481 | 17..2497 | 12375 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2647 | CG5800-RA | 88..2568 | 17..2497 | 12375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17636831..17638924 | 404..2497 | 10455 | 100 | Plus |
| X | 23542271 | X | 17636368..17636756 | 17..405 | 1930 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 02:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1038..1161 | 77..194 | 136 | 62.4 | Plus |
BS11787.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-09 09:28:50 Download gff for
BS11787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 86..2564 | 17..2495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:27 Download gff for
BS11787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 88..2566 | 17..2495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:00 Download gff for
BS11787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 88..2566 | 17..2495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:00 Download gff for
BS11787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17636368..17636754 | 17..403 | 99 | -> | Plus |
| X | 17636831..17638922 | 404..2495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:27 Download gff for
BS11787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17530401..17530787 | 17..403 | 99 | -> | Plus |
| arm_X | 17530864..17532955 | 404..2495 | 99 | | Plus |
BS11787.5prime Sequence
1189 bp (938 high quality bases) assembled on 2010-02-21
> BS11787.5prime
ATGCAGCGCCAGAAACCCAAGGGACCCGGCAAACCGGGTTCGCGCTTCAA
GCCGGGATCCGGCACGTTCAAAGGAGCTGGTGGTGGCCGGAAAAGCGGCG
ACAACAGCCAGAAGCGTCCGCGCCAGGAGATCAACAAGTCGCGACTGGCC
GCCACCGAAGCGGAGATCCAGGACCTCAAGACCAAATACGCAGAGATCGA
TGCTACTGCCATTAAGAAGTTCGCCCAGTTTCCGCTGTCCAAGAAGACCC
AAAAGGCACTGGCGGAGTCCAAATTCGTGCATCCCACGCAGGTGCAGCGG
GACAGCATTGGACCCGCACTGCAGGGCAAGGATGTGCTGGGCGCGGCCAT
CACAGGCAGTGGCAAGACACTGGCCTTTCTCATACCCGTTCTGGAGCATC
TGTTCATGAACAAATGGTCGCGCACCGATGGCGTTGGCGCTATCATCATC
TCGCCCACCCGCGAGCTAGCCTACCAGATCTTCGAGACCCTAAAGAAGGT
GGGAAAGCACCACGACTTCTCCGCCGGCCTCATCATCGGAGGCAAGAACC
TGAAGTTCGAGCGCACTCGCATGGACCAGTGCAACATACTGATCTGCACA
CCCGGAAGGCTGCTGCAGCACATGGACGAGAATCCTCTCTTTAATACGAG
CACCATGGAGATGTTGGTCCTGGATGAAGCCGATCGCTGTTTGGATATGG
GTTTCCAGAAGACCCTGAATTCAATCATAGAAAATTTCCCACCAGTGCGT
CAAACGCTGCTATTCTCGGCCACGCAAACGAATACGGTGCAGGATTTGGC
GAGGCTTAATCTAAAGGATCCGGTCTACGTAGGCTACGGAGGAGCGACGC
CCAGAGAGAGCCCAGCGCCAGCACGAAGAAGACTCCGAACACAGCTGTCT
TGGCAGTTCCTGAGCTTTTGCAGCAAAGTTATGTGGGTGTTGACCCTGAA
GGACAAAATCACCATGCTGTGGGCGTTCAATAAGAACCATTTTGAACAAA
AAATCTTTGGGTTCGTGGCCAGTTGCAAGCAGGCCAAGAACCGGGAAAAA
AAATTTTTTAAAAATGGGGCCGGGGAAACCCCCTGCTTGGTTTCCTTAGG
AAAAACCCCCCTAAGGGAATTTCCCCTTTTCCATCCTAAAAAAAAATTTT
CTTTTCCCAAAAAACCCCCCCTCCCTTTTTTTTTTTCTC
BS11787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2647 | CG5800-RA | 88..1129 | 1..1042 | 4910 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17636831..17637485 | 388..1042 | 2940 | 97.3 | Plus |
| X | 23542271 | X | 17636368..17636756 | 1..389 | 1930 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 12:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1038..1161 | 61..178 | 136 | 62.4 | Plus |
BS11787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:06:44 Download gff for
BS11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 86..1127 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 08:41:05 Download gff for
BS11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 88..1129 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:43:06 Download gff for
BS11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 88..1129 | 1..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:43:06 Download gff for
BS11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17636368..17636754 | 1..387 | 99 | -> | Plus |
| X | 17636831..17637486 | 388..1044 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 08:41:05 Download gff for
BS11787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17530401..17530787 | 1..387 | 99 | -> | Plus |
| arm_X | 17530864..17531519 | 388..1044 | 97 | -> | Plus |
BS11787.pep Sequence
Translation from 16 to 2496
> BS11787.pep
MQRQKPKGPGKPGSRFKPGSGTFKGAGGGRKSGDNSQKRPRQEINKSRLA
ATEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQR
DSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIII
SPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQCNILICT
PGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVR
QTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAV
LAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYE
IFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDF
PAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISAL
KEQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSV
FLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQKEQ
GDNAKSINPLLSKLTKQQSFGGGDEDEENSDDEDFIKVKRKDHDVEGEPV
KLDEEDDTENEAEAPLVVPKREKLVTKASLAKKALKKNLQVNSKLKFDDE
GETMADDRSQMKALSARQRTVNQDDDDGGINLVLSKALLTEEDQYDKQRF
RELVKKRHKLQREKLRKKAEEAKGSDDEEEQQDDDNADDAGSESDHSVDL
SWLPDPDKVYKNKPNASDRNESKSESSDASDDEKADDSDGDDDDVSDDEP
AYKKSKLTNKMTLMDTEAIAASLLGS*
BS11787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-PA | 826 | CG5800-PA | 1..826 | 1..826 | 4229 | 100 | Plus |
| pit-PC | 680 | CG6375-PC | 194..629 | 79..531 | 774 | 38.2 | Plus |
| pit-PA | 680 | CG6375-PA | 194..629 | 79..531 | 774 | 38.2 | Plus |
| pit-PB | 680 | CG6375-PB | 194..629 | 79..531 | 774 | 38.2 | Plus |
| CG9630-PA | 613 | CG9630-PA | 13..477 | 78..537 | 597 | 34.8 | Plus |
