Clone Sequence Records
BS11789.3prime Sequence
836 bp (835 high quality bases) assembled on 2006-06-16
> BS11789.3prime
ATGGTCTAGAAAGCTTTCATTCGGATTCCTTAATTAATCTACTCGTTCGC
CACGACTTGCCCAGGTGAAGCTCAGAGCTGCCCGAAAACCAGATGCGCTC
GTTGATCAAGTGCGAATGCAGATCCCCCAAGGCGGGCTCCACTTGGAACT
TTTGCTTGACGTAGCGATGCGTGAGCACATTGGTGAAGACCCAGGTCAAT
TCGTGTTGACGTTGCAATCTCCGCATGCTTTCATGCAGTTCCAGAAGCAT
CTCGTAACGATGGGCGCCATCCTCAAGCATTCGCAGAGTAAAAGCCAGGG
AGTCGATTACAATCAGCTTAATATCGGGATGATCGACGAGATGCCTGTGG
CAACTGAGCACAGTGGCCATTAATTGATCCAGTTTCGGGCACCTCACATA
GTGGATTTTCTGCAGCATTTTGTGAGCCTTAAATTCTGGAACTCTATGTG
CATACTGCCTTTCCAGTTTCAGAGCTAGGCCCATTAATCTGTCAGGATGG
AAATCCTGCCTGGTGTCTATAAATAATGCACTGCCCTCCAATCCACCAGC
TGCCTTGGGAATTTGTACATTTAGGCAAAGTTGCAAGCACATTTGCGTCT
TTCCGGTGCCCGAATTGCCGATCAGTTCAACCAGGTGACCCAAGGATATT
CCACCTCCAAAGTGAGTGTCCAGGGCTTTCTTGCCCGTCAGGATCTTATT
TGAGGCACTTTGGGAAATGTCCCAGCAGGATTTATCAAATATTCGAAAGT
TTTCATGGGACACAGATGGTCTTCTTTCAATTGCTTCTGGTTGCGATGGC
TCCCAAACCCGAACAAATCTATGATTCATGTCGACT
BS11789.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31069-PA | 813 | spn-D-RA | 1..813 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 1026 | CG31069-RA | 89..901 | 829..17 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27165880..27166102 | 810..588 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 27166821..27166997 | 193..17 | 885 | 100 | Minus |
3R | 32079331 | 3R | 27166322..27166480 | 481..323 | 795 | 100 | Minus |
3R | 32079331 | 3R | 27166636..27166764 | 322..194 | 645 | 100 | Minus |
3R | 32079331 | 3R | 27166159..27166267 | 588..480 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:54:29 has no hits.
BS11789.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:26 Download gff for
BS11789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31069-PA | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:27 Download gff for
BS11789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 12..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:28 Download gff for
BS11789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 12..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:28 Download gff for
BS11789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27165881..27166102 | 588..809 | 100 | -> | Minus |
3R | 27166160..27166266 | 481..587 | 100 | -> | Minus |
3R | 27166323..27166480 | 323..480 | 100 | -> | Minus |
3R | 27166636..27166764 | 194..322 | 100 | -> | Minus |
3R | 27166821..27167001 | 12..193 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:27 Download gff for
BS11789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22991603..22991824 | 588..809 | 100 | -> | Minus |
arm_3R | 22991882..22991988 | 481..587 | 100 | -> | Minus |
arm_3R | 22992045..22992202 | 323..480 | 100 | -> | Minus |
arm_3R | 22992358..22992486 | 194..322 | 100 | -> | Minus |
arm_3R | 22992543..22992723 | 12..193 | 98 | | Minus |
BS11789.5prime Sequence
843 bp (791 high quality bases) assembled on 2006-06-16
> BS11789.5prime
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGNGCAAGTCGTGGCGAA
CGAGTAGATTAATTAANGAATCCGAAATGAAGCTTTCTAGACC
BS11789.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31069-PA | 813 | spn-D-RA | 1..810 | 17..826 | 4012 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 1026 | CG31069-RA | 89..898 | 17..826 | 4028 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27165880..27166102 | 36..258 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 27166821..27166994 | 653..826 | 848 | 98.9 | Plus |
3R | 32079331 | 3R | 27166322..27166480 | 365..523 | 795 | 100 | Plus |
3R | 32079331 | 3R | 27166636..27166764 | 524..652 | 645 | 100 | Plus |
3R | 32079331 | 3R | 27166159..27166267 | 258..366 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:55:33 has no hits.
BS11789.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:26 Download gff for
BS11789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31069-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:35 Download gff for
BS11789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 10..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:21 Download gff for
BS11789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 81..905 | 10..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:21 Download gff for
BS11789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27166160..27166266 | 259..365 | 100 | -> | Plus |
3R | 27166323..27166480 | 366..523 | 100 | -> | Plus |
3R | 27166636..27166764 | 524..652 | 100 | -> | Plus |
3R | 27166821..27167001 | 653..834 | 97 | | Plus |
3R | 27165881..27166102 | 37..258 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:35 Download gff for
BS11789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22991603..22991824 | 37..258 | 100 | -> | Plus |
arm_3R | 22991882..22991988 | 259..365 | 100 | -> | Plus |
arm_3R | 22992045..22992202 | 366..523 | 100 | -> | Plus |
arm_3R | 22992358..22992486 | 524..652 | 100 | -> | Plus |
arm_3R | 22992543..22992723 | 653..834 | 97 | | Plus |
BS11789.complete Sequence
845 bp assembled on 2006-11-01
GenBank Submission: FJ636971
> BS11789.complete
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGGGCAAGTCGTGGCGAA
CGAGTAGATTAATTAAGGAATCCGAATGAAAGCTTTCTAGACCAT
BS11789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 813 | CG31069-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-RA | 1026 | CG31069-RA | 89..901 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27165880..27166102 | 36..258 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 27166821..27166997 | 653..829 | 885 | 100 | Plus |
3R | 32079331 | 3R | 27166322..27166480 | 365..523 | 795 | 100 | Plus |
3R | 32079331 | 3R | 27166636..27166764 | 524..652 | 645 | 100 | Plus |
3R | 32079331 | 3R | 27166159..27166267 | 258..366 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:12 has no hits.
BS11789.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:47 Download gff for
BS11789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:33 Download gff for
BS11789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 79..903 | 10..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:14 Download gff for
BS11789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 89..900 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:47 Download gff for
BS11789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 79..903 | 10..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:47 Download gff for
BS11789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-D-RA | 89..900 | 17..828 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:47 Download gff for
BS11789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27165881..27166102 | 37..258 | 100 | -> | Plus |
3R | 27166160..27166266 | 259..365 | 100 | -> | Plus |
3R | 27166323..27166480 | 366..523 | 100 | -> | Plus |
3R | 27166636..27166764 | 524..652 | 100 | -> | Plus |
3R | 27165804..27165823 | 17..36 | 100 | -> | Plus |
3R | 27166821..27166996 | 653..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:14 Download gff for
BS11789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22991526..22991545 | 17..36 | 100 | -> | Plus |
arm_3R | 22991603..22991824 | 37..258 | 100 | -> | Plus |
arm_3R | 22991882..22991988 | 259..365 | 100 | -> | Plus |
arm_3R | 22992045..22992202 | 366..523 | 100 | -> | Plus |
arm_3R | 22992358..22992486 | 524..652 | 100 | -> | Plus |
arm_3R | 22992543..22992718 | 653..828 | 100 | | Plus |
BS11789.pep Sequence
Translation from 16 to 828
> BS11789.pep
MNHRFVRVWEPSQPEAIERRPSVSHENFRIFDKSCWDISQSASNKILTGK
KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGS
ALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKL
DQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHE
SMRRLQRQHELTWVFTNVLTHRYVKQKFQVEPALGDLHSHLINERIWFSG
SSELHLGKSWRTSRLIKESE*
BS11789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-D-PA | 270 | CG31069-PA | 1..270 | 1..270 | 1429 | 100 | Plus |
spn-B-PA | 341 | CG3325-PA | 86..289 | 44..255 | 188 | 28.8 | Plus |
spn-A-PB | 279 | CG7948-PB | 41..252 | 45..267 | 171 | 27.8 | Plus |
spn-A-PA | 336 | CG7948-PA | 98..309 | 45..267 | 171 | 27.8 | Plus |