Clone BS11789 Report

Search the DGRC for BS11789

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptspn-D-RA
Protein status:BS11789.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11789.3prime Sequence

836 bp (835 high quality bases) assembled on 2006-06-16

> BS11789.3prime
ATGGTCTAGAAAGCTTTCATTCGGATTCCTTAATTAATCTACTCGTTCGC
CACGACTTGCCCAGGTGAAGCTCAGAGCTGCCCGAAAACCAGATGCGCTC
GTTGATCAAGTGCGAATGCAGATCCCCCAAGGCGGGCTCCACTTGGAACT
TTTGCTTGACGTAGCGATGCGTGAGCACATTGGTGAAGACCCAGGTCAAT
TCGTGTTGACGTTGCAATCTCCGCATGCTTTCATGCAGTTCCAGAAGCAT
CTCGTAACGATGGGCGCCATCCTCAAGCATTCGCAGAGTAAAAGCCAGGG
AGTCGATTACAATCAGCTTAATATCGGGATGATCGACGAGATGCCTGTGG
CAACTGAGCACAGTGGCCATTAATTGATCCAGTTTCGGGCACCTCACATA
GTGGATTTTCTGCAGCATTTTGTGAGCCTTAAATTCTGGAACTCTATGTG
CATACTGCCTTTCCAGTTTCAGAGCTAGGCCCATTAATCTGTCAGGATGG
AAATCCTGCCTGGTGTCTATAAATAATGCACTGCCCTCCAATCCACCAGC
TGCCTTGGGAATTTGTACATTTAGGCAAAGTTGCAAGCACATTTGCGTCT
TTCCGGTGCCCGAATTGCCGATCAGTTCAACCAGGTGACCCAAGGATATT
CCACCTCCAAAGTGAGTGTCCAGGGCTTTCTTGCCCGTCAGGATCTTATT
TGAGGCACTTTGGGAAATGTCCCAGCAGGATTTATCAAATATTCGAAAGT
TTTCATGGGACACAGATGGTCTTCTTTCAATTGCTTCTGGTTGCGATGGC
TCCCAAACCCGAACAAATCTATGATTCATGTCGACT

BS11789.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31069-PA 813 spn-D-RA 1..813 829..17 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 1026 CG31069-RA 89..901 829..17 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27165880..27166102 810..588 1115 100 Minus
3R 32079331 3R 27166821..27166997 193..17 885 100 Minus
3R 32079331 3R 27166322..27166480 481..323 795 100 Minus
3R 32079331 3R 27166636..27166764 322..194 645 100 Minus
3R 32079331 3R 27166159..27166267 588..480 545 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:54:29 has no hits.

BS11789.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:26 Download gff for BS11789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31069-PA 1..813 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:27 Download gff for BS11789.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 12..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:28 Download gff for BS11789.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 12..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:28 Download gff for BS11789.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27165881..27166102 588..809 100 -> Minus
3R 27166160..27166266 481..587 100 -> Minus
3R 27166323..27166480 323..480 100 -> Minus
3R 27166636..27166764 194..322 100 -> Minus
3R 27166821..27167001 12..193 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:27 Download gff for BS11789.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22991603..22991824 588..809 100 -> Minus
arm_3R 22991882..22991988 481..587 100 -> Minus
arm_3R 22992045..22992202 323..480 100 -> Minus
arm_3R 22992358..22992486 194..322 100 -> Minus
arm_3R 22992543..22992723 12..193 98   Minus

BS11789.5prime Sequence

843 bp (791 high quality bases) assembled on 2006-06-16

> BS11789.5prime
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGNGCAAGTCGTGGCGAA
CGAGTAGATTAATTAANGAATCCGAAATGAAGCTTTCTAGACC

BS11789.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31069-PA 813 spn-D-RA 1..810 17..826 4012 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 1026 CG31069-RA 89..898 17..826 4028 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27165880..27166102 36..258 1115 100 Plus
3R 32079331 3R 27166821..27166994 653..826 848 98.9 Plus
3R 32079331 3R 27166322..27166480 365..523 795 100 Plus
3R 32079331 3R 27166636..27166764 524..652 645 100 Plus
3R 32079331 3R 27166159..27166267 258..366 545 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:55:33 has no hits.

BS11789.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:26 Download gff for BS11789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31069-PA 1..813 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:35 Download gff for BS11789.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 10..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:21 Download gff for BS11789.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 81..905 10..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:21 Download gff for BS11789.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27166160..27166266 259..365 100 -> Plus
3R 27166323..27166480 366..523 100 -> Plus
3R 27166636..27166764 524..652 100 -> Plus
3R 27166821..27167001 653..834 97   Plus
3R 27165881..27166102 37..258 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:35 Download gff for BS11789.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22991603..22991824 37..258 100 -> Plus
arm_3R 22991882..22991988 259..365 100 -> Plus
arm_3R 22992045..22992202 366..523 100 -> Plus
arm_3R 22992358..22992486 524..652 100 -> Plus
arm_3R 22992543..22992723 653..834 97   Plus

BS11789.complete Sequence

845 bp assembled on 2006-11-01

GenBank Submission: FJ636971

> BS11789.complete
GAAGTTATCAGTCGACATGAATCATAGATTTGTTCGGGTTTGGGAGCCAT
CGCAACCAGAAGCAATTGAAAGAAGACCATCTGTGTCCCATGAAAACTTT
CGAATATTTGATAAATCCTGCTGGGACATTTCCCAAAGTGCCTCAAATAA
GATCCTGACGGGCAAGAAAGCCCTGGACACTCACTTTGGAGGTGGAATAT
CCTTGGGTCACCTGGTTGAACTGATCGGCAATTCGGGCACCGGAAAGACG
CAAATGTGCTTGCAACTTTGCCTAAATGTACAAATTCCCAAGGCAGCTGG
TGGATTGGAGGGCAGTGCATTATTTATAGACACCAGGCAGGATTTCCATC
CTGACAGATTAATGGGCCTAGCTCTGAAACTGGAAAGGCAGTATGCACAT
AGAGTTCCAGAATTTAAGGCTCACAAAATGCTGCAGAAAATCCACTATGT
GAGGTGCCCGAAACTGGATCAATTAATGGCCACTGTGCTCAGTTGCCACA
GGCATCTCGTCGATCATCCCGATATTAAGCTGATTGTAATCGACTCCCTG
GCTTTTACTCTGCGAATGCTTGAGGATGGCGCCCATCGTTACGAGATGCT
TCTGGAACTGCATGAAAGCATGCGGAGATTGCAACGTCAACACGAATTGA
CCTGGGTCTTCACCAATGTGCTCACGCATCGCTACGTCAAGCAAAAGTTC
CAAGTGGAGCCCGCCTTGGGGGATCTGCATTCGCACTTGATCAACGAGCG
CATCTGGTTTTCGGGCAGCTCTGAGCTTCACCTGGGCAAGTCGTGGCGAA
CGAGTAGATTAATTAAGGAATCCGAATGAAAGCTTTCTAGACCAT

BS11789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 813 CG31069-PA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-RA 1026 CG31069-RA 89..901 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27165880..27166102 36..258 1115 100 Plus
3R 32079331 3R 27166821..27166997 653..829 885 100 Plus
3R 32079331 3R 27166322..27166480 365..523 795 100 Plus
3R 32079331 3R 27166636..27166764 524..652 645 100 Plus
3R 32079331 3R 27166159..27166267 258..366 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:12 has no hits.

BS11789.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:47 Download gff for BS11789.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:33 Download gff for BS11789.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 79..903 10..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:14 Download gff for BS11789.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 89..900 17..828 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:47 Download gff for BS11789.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 79..903 10..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:47 Download gff for BS11789.complete
Subject Subject Range Query Range Percent Splice Strand
spn-D-RA 89..900 17..828 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:47 Download gff for BS11789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27165881..27166102 37..258 100 -> Plus
3R 27166160..27166266 259..365 100 -> Plus
3R 27166323..27166480 366..523 100 -> Plus
3R 27166636..27166764 524..652 100 -> Plus
3R 27165804..27165823 17..36 100 -> Plus
3R 27166821..27166996 653..828 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:14 Download gff for BS11789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22991526..22991545 17..36 100 -> Plus
arm_3R 22991603..22991824 37..258 100 -> Plus
arm_3R 22991882..22991988 259..365 100 -> Plus
arm_3R 22992045..22992202 366..523 100 -> Plus
arm_3R 22992358..22992486 524..652 100 -> Plus
arm_3R 22992543..22992718 653..828 100   Plus

BS11789.pep Sequence

Translation from 16 to 828

> BS11789.pep
MNHRFVRVWEPSQPEAIERRPSVSHENFRIFDKSCWDISQSASNKILTGK
KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGS
ALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKL
DQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHE
SMRRLQRQHELTWVFTNVLTHRYVKQKFQVEPALGDLHSHLINERIWFSG
SSELHLGKSWRTSRLIKESE*

BS11789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
spn-D-PA 270 CG31069-PA 1..270 1..270 1429 100 Plus
spn-B-PA 341 CG3325-PA 86..289 44..255 188 28.8 Plus
spn-A-PB 279 CG7948-PB 41..252 45..267 171 27.8 Plus
spn-A-PA 336 CG7948-PA 98..309 45..267 171 27.8 Plus