Clone Sequence Records
BS11790.3prime Sequence
477 bp (477 high quality bases) assembled on 2006-06-16
> BS11790.3prime
ATGGTCTAGAAAGCTTTCAGAGTAGTTGAGTTGCCAAGAGAAACAAGACC
AGACTGCCGAAGATTTTCCATTTATCCACTGGATGATTTTCCGATCCGTT
GCAGTAGTTCTCGCTGTCGCACACATGACAACTTGAGTTCTGCACCGCCG
ACAGGGTGGGGTCCATTTTGCACCACACATCGGTGGCATTTACCTCGCCG
AAGTAGCAGCCTCTGACGATCTTACGCACGCCGTTTTCCTTGAATACCCG
TTTCAAACAGGCCGTGGCATTCACGCTGAGCAGATCGTTCTCCAGGAATC
GCGGAGGAGCAATGAAGGCGCAGTCGTATTTAAAATGGTTCTCGACTTCG
AAGTCGTCGCCGCAACTAGCCTCGTAGACGGATTCGCAGGCATAGCACTT
GATGGCGTAAGCTGAGGCCAGTAGCGAGATGAGCGCGCCAAACAAAAGTA
AATAATGCTGCATGTCGACTGATAACT
BS11790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-PA | 447 | CG31675-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 1151 | CG31675-RA | 392..838 | 463..17 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20869116..20869337 | 238..17 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 20868349..20868524 | 413..238 | 880 | 100 | Minus |
2L | 23513712 | 2L | 20868146..20868197 | 463..412 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:38:32 has no hits.
BS11790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:27 Download gff for
BS11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:44 Download gff for
BS11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 13..471 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:09 Download gff for
BS11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 13..471 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:09 Download gff for
BS11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20868138..20868197 | 412..471 | 95 | -> | Minus |
2L | 20868351..20868524 | 238..411 | 100 | -> | Minus |
2L | 20869117..20869340 | 13..237 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:44 Download gff for
BS11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20868138..20868197 | 412..471 | 95 | -> | Minus |
arm_2L | 20868351..20868524 | 238..411 | 100 | -> | Minus |
arm_2L | 20869117..20869340 | 13..237 | 99 | | Minus |
BS11790.5prime Sequence
477 bp (477 high quality bases) assembled on 2006-06-16
> BS11790.5prime
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCTGAAAGCTTTCTAGACC
BS11790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-PA | 447 | CG31675-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 1151 | CG31675-RA | 392..838 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20869116..20869337 | 242..463 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 20868349..20868524 | 67..242 | 880 | 100 | Plus |
2L | 23513712 | 2L | 20868146..20868197 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:11:16 has no hits.
BS11790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:27 Download gff for
BS11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:31 Download gff for
BS11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 9..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:12 Download gff for
BS11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 384..841 | 9..467 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:12 Download gff for
BS11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20868138..20868197 | 9..68 | 95 | -> | Plus |
2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
2L | 20869117..20869340 | 243..467 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:31 Download gff for
BS11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
arm_2L | 20868138..20868197 | 9..68 | 95 | -> | Plus |
arm_2L | 20869117..20869340 | 243..467 | 99 | | Plus |
BS11790.complete Sequence
479 bp assembled on 2006-11-01
GenBank Submission: FJ636972
> BS11790.complete
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCTGAAAGCTTTCTAGACCAT
BS11790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 447 | CG31675-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-RA | 1151 | CG31675-RA | 392..838 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20869116..20869337 | 242..463 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 20868349..20868524 | 67..242 | 880 | 100 | Plus |
2L | 23513712 | 2L | 20868146..20868197 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:43:50 has no hits.
BS11790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:50 Download gff for
BS11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:35 Download gff for
BS11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 382..839 | 9..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:07 Download gff for
BS11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 392..837 | 17..462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:50 Download gff for
BS11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 382..839 | 9..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:48 Download gff for
BS11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31675-RA | 392..837 | 17..462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:48 Download gff for
BS11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20869117..20869336 | 243..462 | 100 | | Plus |
2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
2L | 20868146..20868197 | 17..68 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:07 Download gff for
BS11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20868146..20868197 | 17..68 | 100 | -> | Plus |
arm_2L | 20868351..20868524 | 69..242 | 100 | -> | Plus |
arm_2L | 20869117..20869336 | 243..462 | 100 | | Plus |
BS11790.pep Sequence
Translation from 16 to 462
> BS11790.pep
MQHYLLLFGALISLLASAYAIKCYACESVYEASCGDDFEVENHFKYDCAF
IAPPRFLENDLLSVNATACLKRVFKENGVRKIVRGCYFGEVNATDVWCKM
DPTLSAVQNSSCHVCDSENYCNGSENHPVDKWKIFGSLVLFLLATQLL*
BS11790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31675-PA | 148 | CG31675-PA | 1..148 | 1..148 | 801 | 100 | Plus |
CG9336-PA | 148 | CG9336-PA | 9..147 | 6..148 | 267 | 40.3 | Plus |
CG9338-PB | 147 | CG9338-PB | 8..146 | 5..148 | 258 | 38.2 | Plus |
CG9338-PA | 147 | CG9338-PA | 8..146 | 5..148 | 258 | 38.2 | Plus |
CG9336-PB | 115 | CG9336-PB | 4..114 | 34..148 | 195 | 37.1 | Plus |