Clone BS11790 Report

Search the DGRC for BS11790

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG31675-RA
Protein status:BS11790.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11790.3prime Sequence

477 bp (477 high quality bases) assembled on 2006-06-16

> BS11790.3prime
ATGGTCTAGAAAGCTTTCAGAGTAGTTGAGTTGCCAAGAGAAACAAGACC
AGACTGCCGAAGATTTTCCATTTATCCACTGGATGATTTTCCGATCCGTT
GCAGTAGTTCTCGCTGTCGCACACATGACAACTTGAGTTCTGCACCGCCG
ACAGGGTGGGGTCCATTTTGCACCACACATCGGTGGCATTTACCTCGCCG
AAGTAGCAGCCTCTGACGATCTTACGCACGCCGTTTTCCTTGAATACCCG
TTTCAAACAGGCCGTGGCATTCACGCTGAGCAGATCGTTCTCCAGGAATC
GCGGAGGAGCAATGAAGGCGCAGTCGTATTTAAAATGGTTCTCGACTTCG
AAGTCGTCGCCGCAACTAGCCTCGTAGACGGATTCGCAGGCATAGCACTT
GATGGCGTAAGCTGAGGCCAGTAGCGAGATGAGCGCGCCAAACAAAAGTA
AATAATGCTGCATGTCGACTGATAACT

BS11790.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-PA 447 CG31675-RA 1..447 463..17 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 1151 CG31675-RA 392..838 463..17 2235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20869116..20869337 238..17 1110 100 Minus
2L 23513712 2L 20868349..20868524 413..238 880 100 Minus
2L 23513712 2L 20868146..20868197 463..412 260 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:38:32 has no hits.

BS11790.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:27 Download gff for BS11790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:44 Download gff for BS11790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 13..471 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:09 Download gff for BS11790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 13..471 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:09 Download gff for BS11790.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20868138..20868197 412..471 95 -> Minus
2L 20868351..20868524 238..411 100 -> Minus
2L 20869117..20869340 13..237 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:44 Download gff for BS11790.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20868138..20868197 412..471 95 -> Minus
arm_2L 20868351..20868524 238..411 100 -> Minus
arm_2L 20869117..20869340 13..237 99   Minus

BS11790.5prime Sequence

477 bp (477 high quality bases) assembled on 2006-06-16

> BS11790.5prime
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCTGAAAGCTTTCTAGACC

BS11790.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-PA 447 CG31675-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 1151 CG31675-RA 392..838 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20869116..20869337 242..463 1110 100 Plus
2L 23513712 2L 20868349..20868524 67..242 880 100 Plus
2L 23513712 2L 20868146..20868197 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:11:16 has no hits.

BS11790.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:27 Download gff for BS11790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:31 Download gff for BS11790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 9..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:12 Download gff for BS11790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 9..467 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:12 Download gff for BS11790.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20868138..20868197 9..68 95 -> Plus
2L 20868351..20868524 69..242 100 -> Plus
2L 20869117..20869340 243..467 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:31 Download gff for BS11790.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20868351..20868524 69..242 100 -> Plus
arm_2L 20868138..20868197 9..68 95 -> Plus
arm_2L 20869117..20869340 243..467 99   Plus

BS11790.complete Sequence

479 bp assembled on 2006-11-01

GenBank Submission: FJ636972

> BS11790.complete
GAAGTTATCAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCA
TCTCGCTACTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCC
GTCTACGAGGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAA
ATACGACTGCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGC
TCAGCGTGAATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGC
GTGCGTAAGATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGA
TGTGTGGTGCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTT
GTCATGTGTGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCA
GTGGATAAATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAAC
TCAACTACTCTGAAAGCTTTCTAGACCAT

BS11790.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 447 CG31675-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 1151 CG31675-RA 392..838 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20869116..20869337 242..463 1110 100 Plus
2L 23513712 2L 20868349..20868524 67..242 880 100 Plus
2L 23513712 2L 20868146..20868197 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:43:50 has no hits.

BS11790.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:50 Download gff for BS11790.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:35 Download gff for BS11790.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 382..839 9..467 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:07 Download gff for BS11790.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 392..837 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:50 Download gff for BS11790.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 382..839 9..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:48 Download gff for BS11790.complete
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 392..837 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:48 Download gff for BS11790.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20869117..20869336 243..462 100   Plus
2L 20868351..20868524 69..242 100 -> Plus
2L 20868146..20868197 17..68 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:07 Download gff for BS11790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20868146..20868197 17..68 100 -> Plus
arm_2L 20868351..20868524 69..242 100 -> Plus
arm_2L 20869117..20869336 243..462 100   Plus

BS11790.pep Sequence

Translation from 16 to 462

> BS11790.pep
MQHYLLLFGALISLLASAYAIKCYACESVYEASCGDDFEVENHFKYDCAF
IAPPRFLENDLLSVNATACLKRVFKENGVRKIVRGCYFGEVNATDVWCKM
DPTLSAVQNSSCHVCDSENYCNGSENHPVDKWKIFGSLVLFLLATQLL*

BS11790.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-PA 148 CG31675-PA 1..148 1..148 801 100 Plus
CG9336-PA 148 CG9336-PA 9..147 6..148 267 40.3 Plus
CG9338-PB 147 CG9338-PB 8..146 5..148 258 38.2 Plus
CG9338-PA 147 CG9338-PA 8..146 5..148 258 38.2 Plus
CG9336-PB 115 CG9336-PB 4..114 34..148 195 37.1 Plus