BS11792.complete Sequence
1055 bp assembled on 2006-11-01
GenBank Submission: FJ636973
> BS11792.complete
GAAGTTATCAGTCGACATGTTCAAGTTGCTACTTTGCTGCCTTCTACTAA
CCATCGACAGTGGATGGGCCTTTAATCATGGCCAGGATCTAGTGGACTTT
CAAACTTACGAGGACAATTTCAACAAGACCTATGCCTCAACTTCGGCTCG
CAACTTCGCCAACTACTACTTCATCTACAACCGCAACCAGGTGGCGCAGC
ACAATGCCCAGGCCGATAGGAATCGCACCACCTACCGCGAGGCAGTGAAT
CAGTTCTCGGACATCCGGCTCATCCAGTTCGCAGCCCTGCTGCCCAAAGC
CGTGAATACGGTGACCTCGGCGGCCAGTGATCCACCGGCCAGTCAAGCGG
CATCTGCCAGCTTTGACATTATCACGGATTTCGGACTCACCGTGGCGGTG
GAGGATCAGGGCGTGAACTGCAGCAGTAGTTGGGCCTATGCCACCGCCAA
GGCCGTGGAGATCATGAATGCCGTGCAGACAGCCAATCCTCTGCCCTCGT
CCTTGTCCGCCCAGCAGCTGCTGGACTGTGCGGGCATGGGCACCGGATGC
AGCACCCAGACGCCCCTGGCTGCCCTCAACTATCTCACCCAGCTGACAGA
TGCGTATCTCTATCCGGAGGTGGACTATCCGAATAACAATAGCCTGAAAA
CGCCGGGTATGTGCCAGCCCCCATCCTCTGTGTCAGTGGGCGTGAAGTTG
GCCGGCTATTCCACGGTGGCCGACAACGATGATGCCGCCGTAATGCGTTA
CGTATCGAATGGATTCCCCGTCATAGTCGAGTACAATCCGGCTACCTTTG
GATTCATGCAGTACTCCAGTGGCGTCTATGTCCAGGAGACGCGTGCCCTG
ACCAATCCAAAGAGCTCACAGTTCCTGGTGGTCGTGGGCTACGATCACGA
CGTGGACTCCAATCTGGACTACTGGCGCTGCCTGAACTCCTTCGGCGACA
CGTGGGGCGAGGAGGGTTACATCAGGATCGTGCGCAGGTCCAATCAGCCC
ATTGCCAAGAATGCCGTCTTTCCCAGTGCGCTTGCCTAAAAGCTTTCTAG
ACCAT
BS11792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6337-RB | 1023 | CG6337-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
| CG6337-RA | 1023 | CG6337-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6337-RB | 1402 | CG6337-RB | 30..1057 | 12..1039 | 5125 | 99.9 | Plus |
| CG6337-RA | 1117 | CG6337-RA | 30..1057 | 12..1039 | 5125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13833920..13834848 | 1039..111 | 4645 | 100 | Minus |
| 2R | 25286936 | 2R | 13834966..13835067 | 113..12 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:58:54 has no hits.
BS11792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:53 Download gff for
BS11792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:37 Download gff for
BS11792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 22..1061 | 12..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:59 Download gff for
BS11792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 40..1055 | 22..1037 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:54 Download gff for
BS11792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 22..1061 | 12..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:33 Download gff for
BS11792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 40..1055 | 22..1037 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:33 Download gff for
BS11792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13833922..13834846 | 113..1037 | 100 | <- | Minus |
| 2R | 13834967..13835057 | 22..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:59 Download gff for
BS11792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9721427..9722351 | 113..1037 | 100 | <- | Minus |
| arm_2R | 9722472..9722562 | 22..112 | 100 | | Minus |
BS11792.pep Sequence
Translation from 16 to 1038
> BS11792.pep
MFKLLLCCLLLTIDSGWAFNHGQDLVDFQTYEDNFNKTYASTSARNFANY
YFIYNRNQVAQHNAQADRNRTTYREAVNQFSDIRLIQFAALLPKAVNTVT
SAASDPPASQAASASFDIITDFGLTVAVEDQGVNCSSSWAYATAKAVEIM
NAVQTANPLPSSLSAQQLLDCAGMGTGCSTQTPLAALNYLTQLTDAYLYP
EVDYPNNNSLKTPGMCQPPSSVSVGVKLAGYSTVADNDDAAVMRYVSNGF
PVIVEYNPATFGFMQYSSGVYVQETRALTNPKSSQFLVVVGYDHDVDSNL
DYWRCLNSFGDTWGEEGYIRIVRRSNQPIAKNAVFPSALA*
BS11792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6337-PB | 340 | CG6337-PB | 1..340 | 1..340 | 1777 | 100 | Plus |
| CG6337-PA | 340 | CG6337-PA | 1..340 | 1..340 | 1777 | 100 | Plus |
| CG11459-PB | 336 | CG11459-PB | 29..322 | 27..326 | 238 | 27.8 | Plus |
| CG11459-PA | 336 | CG11459-PA | 29..322 | 27..326 | 238 | 27.8 | Plus |
| CG6347-PA | 352 | CG6347-PA | 32..337 | 25..325 | 230 | 26.4 | Plus |
