Clone Sequence Records
BS11796.3prime Sequence
330 bp (330 high quality bases) assembled on 2006-06-16
> BS11796.3prime
ATGGTCTAGAAAGCTTTTAGACATTGTAGCCTACAATGTGACGCTTGCCG
ATGCACTCGCCGATGTAGAACCAGAAGATGACCTCGGCGGTCACCAGGGT
GTTAAGCCAGGCCTCGCGAACCGTGAGGTTCTTGTAGGCGCCGGTCTTGG
CTCCCTTGATGATGTTGCCCAGTCCTTGGCGAATGGCCGGAATATCGGCG
GGCGTCGGGGGCGTCAGTTCCACCTTGGCGTACTTCAGGAACACGTCCAG
TTGGGGCCTCGCCTGTGTGAGGAGCCTGTTCACAAGTCCTGATCCCTTGG
TAGCCAAACTCGCCATGTCGACTGATAACT
BS11796.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6105-PA | 300 | l(2)06225-RA | 1..300 | 316..17 | 1500 | 100 | Minus |
CG6105-PB | 300 | l(2)06225-RB | 1..300 | 316..17 | 1500 | 100 | Minus |
CG6105-PC | 300 | l(2)06225-RC | 1..300 | 316..17 | 1500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06225-RD | 733 | CG6105-RD | 54..353 | 316..17 | 1500 | 100 | Minus |
l(2)06225-RB | 477 | CG6105-RB | 54..353 | 316..17 | 1500 | 100 | Minus |
l(2)06225-RA | 497 | CG6105-RA | 74..373 | 316..17 | 1500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10975902..10976161 | 17..276 | 1300 | 100 | Plus |
2L | 23513712 | 2L | 10976250..10976290 | 276..316 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:10:45 has no hits.
BS11796.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:29 Download gff for
BS11796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6105-PC | 1..300 | 17..316 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:51 Download gff for
BS11796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RA | 74..381 | 7..316 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:20 Download gff for
BS11796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RA | 74..381 | 7..316 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:20 Download gff for
BS11796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10976251..10976290 | 277..316 | 100 | | Plus |
2L | 10975894..10976161 | 7..276 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:51 Download gff for
BS11796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10975894..10976161 | 7..276 | 98 | <- | Plus |
arm_2L | 10976251..10976290 | 277..316 | 100 | | Plus |
BS11796.5prime Sequence
330 bp (330 high quality bases) assembled on 2006-06-16
> BS11796.5prime
GAAGTTATCAGTCGACATGGCGAGTTTGGCTACCAAGGGATCAGGACTTG
TGAACAGGCTCCTCACACAGGCGAGGCCCCAACTGGACGTGTTCCTGAAG
TACGCCAAGGTGGAACTGACGCCCCCGACGCCCGCCGATATTCCGGCCAT
TCGCCAAGGACTGGGCAACATCATCAAGGGAGCCAAGACCGGCGCCTACA
AGAACCTCACGGTTCGCGAGGCCTGGCTTAACACCCTGGTGACCGCCGAG
GTCATCTTCTGGTTCTACATCGGCGAGTGCATCGGCAAGCGTCACATTGT
AGGCTACAATGTCTAAAAGCTTTCTAGACC
BS11796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6105-PA | 300 | l(2)06225-RA | 1..300 | 17..316 | 1500 | 100 | Plus |
CG6105-PB | 300 | l(2)06225-RB | 1..300 | 17..316 | 1500 | 100 | Plus |
CG6105-PC | 300 | l(2)06225-RC | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06225-RD | 733 | CG6105-RD | 54..353 | 17..316 | 1500 | 100 | Plus |
l(2)06225-RB | 477 | CG6105-RB | 54..353 | 17..316 | 1500 | 100 | Plus |
l(2)06225-RA | 497 | CG6105-RA | 74..373 | 17..316 | 1500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10975902..10976161 | 316..57 | 1300 | 100 | Minus |
2L | 23513712 | 2L | 10976250..10976290 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:39:13 has no hits.
BS11796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:29 Download gff for
BS11796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6105-PC | 1..300 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:48 Download gff for
BS11796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RA | 74..381 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:15 Download gff for
BS11796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RA | 74..381 | 17..326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:15 Download gff for
BS11796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10975894..10976161 | 57..326 | 98 | <- | Minus |
2L | 10976251..10976290 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:48 Download gff for
BS11796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10975894..10976161 | 57..326 | 98 | <- | Minus |
arm_2L | 10976251..10976290 | 17..56 | 100 | | Minus |
BS11796.complete Sequence
332 bp assembled on 2006-11-01
GenBank Submission: FJ636975
> BS11796.complete
GAAGTTATCAGTCGACATGGCGAGTTTGGCTACCAAGGGATCAGGACTTG
TGAACAGGCTCCTCACACAGGCGAGGCCCCAACTGGACGTGTTCCTGAAG
TACGCCAAGGTGGAACTGACGCCCCCGACGCCCGCCGATATTCCGGCCAT
TCGCCAAGGACTGGGCAACATCATCAAGGGAGCCAAGACCGGCGCCTACA
AGAACCTCACGGTTCGCGAGGCCTGGCTTAACACCCTGGTGACCGCCGAG
GTCATCTTCTGGTTCTACATCGGCGAGTGCATCGGCAAGCGTCACATTGT
AGGCTACAATGTCTAAAAGCTTTCTAGACCAT
BS11796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06225-RD | 300 | CG6105-PD | 1..300 | 17..316 | 1500 | 100 | Plus |
l(2)06225-RB | 300 | CG6105-PB | 1..300 | 17..316 | 1500 | 100 | Plus |
l(2)06225-RA | 300 | CG6105-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06225-RD | 733 | CG6105-RD | 54..353 | 17..316 | 1500 | 100 | Plus |
l(2)06225-RB | 477 | CG6105-RB | 54..353 | 17..316 | 1500 | 100 | Plus |
l(2)06225-RA | 497 | CG6105-RA | 74..373 | 17..316 | 1500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10975902..10976161 | 316..57 | 1300 | 100 | Minus |
2L | 23513712 | 2L | 10976250..10976290 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:44 has no hits.
BS11796.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:58 Download gff for
BS11796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RC | 1..300 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:43 Download gff for
BS11796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RC | 434..741 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:48 Download gff for
BS11796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RA | 74..371 | 17..314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:58 Download gff for
BS11796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RC | 434..741 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:44 Download gff for
BS11796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)06225-RA | 74..371 | 17..314 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:44 Download gff for
BS11796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10975904..10976161 | 57..314 | 100 | <- | Minus |
2L | 10976251..10976290 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:48 Download gff for
BS11796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10975904..10976161 | 57..314 | 100 | <- | Minus |
arm_2L | 10976251..10976290 | 17..56 | 100 | | Minus |
BS11796.pep Sequence
Translation from 16 to 315
> BS11796.pep
MASLATKGSGLVNRLLTQARPQLDVFLKYAKVELTPPTPADIPAIRQGLG
NIIKGAKTGAYKNLTVREAWLNTLVTAEVIFWFYIGECIGKRHIVGYNV*
BS11796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)06225-PD | 99 | CG6105-PD | 1..99 | 1..99 | 512 | 100 | Plus |
l(2)06225-PB | 99 | CG6105-PB | 1..99 | 1..99 | 512 | 100 | Plus |
l(2)06225-PA | 99 | CG6105-PA | 1..99 | 1..99 | 512 | 100 | Plus |
CG7211-PA | 107 | CG7211-PA | 1..107 | 1..99 | 261 | 51.4 | Plus |