BS11803.complete Sequence
1802 bp assembled on 2012-04-25
GenBank Submission: KX803603
> BS11803.complete
GAAGTTATCAGTCGACATGCTCAGTGCGCAACAAGAGATCGATCGAGGAA
GACGCCCTGCAAACAAAGAACATCAATTTACAGCACCGCCACCAAGACTC
AGGCGCAGCTCCACCAAGATGACATCACGGACGCGCCACTGTGCCCGACT
GGGGATCGTTCTCCTTGGGATCTGTTGCATCGCCAGCGGAATTTACCTCT
TCCGCAACTGGATCGATATGTTTACACGCATGCGCGGCCAGGAAATGGCC
CTGAGCCCCAATTCACGATCATTCGAGGGCTGGAAGGTGTCGCCGCTGCC
TTTAGACTTCGATATATATCTATTTAACTGGACCAATCCAGATGACTTCT
ATGTGGGATCGAACAAGAAGCCACACTTTGAGCAACTGGGACCCTATCGG
TTTCGAGAGAAACCCGATAAGGTGGACATCGAATGGCACAATCATAACGC
CTCCGTATCATTTCACAAAAAGTCCTGGTTCTACTTTGATGCTGCCGGCA
GCAACGGAAGTTTATGGGATAAAGTGACTACGGTCAACAGCGTAGCGCAC
TCTGCTGCTAGACGTGCGGCCGTCGACTGGTTTGCCAGAACTGGCGTTAA
CATTGCCAATAAATTATATAGACAGGGAGTGACCATTACGAAAACAGTTG
ATGAAATGCTTTTCAAGGGCTACGAGCATCCATTCATAAGCGTGGGCAAG
CTGTTGAGACCTCAGGATGTTCCCTACAAACGTATAGGCTACCATTACCC
ACGAAATGGCAGTTCCGAGTTCGATGGTGATATCAACATGTTTACAGGAG
CTGATGATATCGCTAAAATGGGTCAGATTCATACGTGGAATAATTTGACG
CATACTGGAGCCTTTGAGGGCACCTGCGGGCAGGTGCACGGCTCGATGGG
CGAATTCTTTCCGCCCAATCTTGGCACCAAAGACACCGTCTACATGTACA
TGCCCAAGATGTGTCGTGCTATACCATTGGACTACGTGGAAACTGTGACC
GTGCACGGCGTGACCGCCTACAAATTCAGTGGCACCCGGCACGCTGTGGA
CAATGGCACTCTATATCCGGATACCCGTTGCTATTGTGTCGGAGGAAAGT
GTATGCCCAGCGGTGTGATCAATATCGGACCCTGCTCCTTTAACGCATCC
GTCTACATGTCCTTTCCGCACTTTTACATGGCGGATCCAAGCTATCTGGA
GGCCATCGAGGGTTTGCGACCAGAACGCGAGAAGCACGAGTTCTTCATGG
CCCTGGAGCCCAATGCGGGCGTGCCAATGGACGTGGGTGGTGGCTTTCAG
GCCAACTACTACATGGAGCCAATTCCGGGTATTACCTTGTATGAGAATGT
CCCGACGGTCATGATACCCATGATGTGGTGCGAGGAGCGCGTACGCGTAT
CAGAGGAAATTGCCGCAGACATTGCGCTTGTTCCGCTAATTGTCCTGCTG
GGGCAGATAGTAACCGGCATCCTTTTGGCGGGCGGTCTTATATGCACCTG
CTGGTACCCGACGCGACAAGTGACGCACTTTTGTCACAGCGATCCAAAGG
CGAAGGCCAGTGTCCTGCGACCACTGAACGCCTTTGGTGTAAATTCGTCG
GCAGCCACAGCGCCGGTGGCCCAACTATTCCGGAACAACATTAGTTCATC
GGGCAACGAGCGTGTGGGAGTGCGCCTACTGGATTATAATCGCGATTCTG
GCATAAGACTGGAGAGTGGTACCATGGAAAGCTCGCACAGGGAGCGTCTG
ATCAGCGAGGACTCGCCCGATGTTGTAGTTAGATAAAAGCTTTCTAGACC
AT
BS11803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-RF | 1668 | CG7228-PF | 1..1668 | 119..1786 | 8325 | 99.9 | Plus |
| pes-RH | 1668 | CG7228-PH | 1..1668 | 119..1786 | 8325 | 99.9 | Plus |
| pes-RG | 1668 | CG7228-PG | 1..1668 | 119..1786 | 8325 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-RH | 2653 | CG7228-RH | 119..1889 | 16..1786 | 8840 | 99.9 | Plus |
| pes-RG | 2797 | CG7228-RG | 263..2033 | 16..1786 | 8840 | 99.9 | Plus |
| pes-RD | 2973 | CG7228-RD | 112..1882 | 16..1786 | 8840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7988393..7989177 | 1335..551 | 3910 | 99.9 | Minus |
| 2L | 23513712 | 2L | 7987877..7988327 | 1786..1336 | 2255 | 100 | Minus |
| 2L | 23513712 | 2L | 7989243..7989553 | 550..240 | 1555 | 100 | Minus |
| 2L | 23513712 | 2L | 7991357..7991583 | 242..16 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:16:20 has no hits.
BS11803.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:01 Download gff for
BS11803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RD | 111..1878 | 17..1784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:44 Download gff for
BS11803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RD | 111..1878 | 17..1784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:50 Download gff for
BS11803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RC | 382..2149 | 17..1784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:55 Download gff for
BS11803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pes-RD | 113..1880 | 17..1784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:55 Download gff for
BS11803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7987879..7988327 | 1336..1784 | 100 | <- | Minus |
| 2L | 7988393..7989177 | 551..1335 | 99 | <- | Minus |
| 2L | 7989243..7989551 | 242..550 | 100 | <- | Minus |
| 2L | 7991358..7991582 | 17..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:50 Download gff for
BS11803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7987879..7988327 | 1336..1784 | 100 | <- | Minus |
| arm_2L | 7988393..7989177 | 551..1335 | 99 | <- | Minus |
| arm_2L | 7989243..7989551 | 242..550 | 100 | <- | Minus |
| arm_2L | 7991358..7991582 | 17..241 | 100 | | Minus |
BS11803.pep Sequence
Translation from 16 to 1785
> BS11803.pep
MLSAQQEIDRGRRPANKEHQFTAPPPRLRRSSTKMTSRTRHCARLGIVLL
GICCIASGIYLFRNWIDMFTRMRGQEMALSPNSRSFEGWKVSPLPLDFDI
YLFNWTNPDDFYVGSNKKPHFEQLGPYRFREKPDKVDIEWHNHNASVSFH
KKSWFYFDAAGSNGSLWDKVTTVNSVAHSAARRAAVDWFARTGVNIANKL
YRQGVTITKTVDEMLFKGYEHPFISVGKLLRPQDVPYKRIGYHYPRNGSS
EFDGDINMFTGADDIAKMGQIHTWNNLTHTGAFEGTCGQVHGSMGEFFPP
NLGTKDTVYMYMPKMCRAIPLDYVETVTVHGVTAYKFSGTRHAVDNGTLY
PDTRCYCVGGKCMPSGVINIGPCSFNASVYMSFPHFYMADPSYLEAIEGL
RPEREKHEFFMALEPNAGVPMDVGGGFQANYYMEPIPGITLYENVPTVMI
PMMWCEERVRVSEEIAADIALVPLIVLLGQIVTGILLAGGLICTCWYPTR
QVTHFCHSDPKAKASVLRPLNAFGVNSSAATAPVAQLFRNNISSSGNERV
GVRLLDYNRDSGIRLESGTMESSHRERLISEDSPDVVVR*
BS11803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pes-PF | 555 | CG7228-PF | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PH | 555 | CG7228-PH | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PG | 555 | CG7228-PG | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PD | 555 | CG7228-PD | 1..555 | 35..589 | 3004 | 100 | Plus |
| pes-PC | 555 | CG7228-PC | 1..555 | 35..589 | 3004 | 100 | Plus |
