BS11805.complete Sequence
1349 bp assembled on 2006-11-01
GenBank Submission: FJ636976
> BS11805.complete
GAAGTTATCAGTCGACATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCC
AGAAGGGCACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTC
TTTCCATTGGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGC
CCAGCTGCCCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGA
CCCAAATGGAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGC
AACATCAACATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGG
CGGAATGTACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCT
TCTTCGTATTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTG
TGCGACTTTCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTC
CACGGAGGCGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCG
ATCGGAGTAGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTAT
GTGTCCACATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATT
CACGGTGTTGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCC
AGGCATTTTGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCAC
ATCAAGTGGGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACT
CTTTGCCATGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGT
CGGCAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCAT
CCCGAGAGATTGGCCAATGTGGGGATCAAGCGCGGAGAAGGGGACGGCAG
CTTGATCTGCACAGTGCATCCGGACGTCTATGTGCATCCCAGTGCCACTG
TCCATCACAGCGCAGTGCTGGGACCCAATGTGGCGATTGGACCTGGAGTG
ACAATTGGACCAGGTGTGCGCATTCGCGAATCGATTGTTTTGGAGCAGGC
ACAGATCCTGGACCATACGCTCGTGCTGCACTCTATTGTGGGCAGGGGCT
CCACCATTGGAGCTTGGGCTCGAGTCGAGGGCACACCTAGTGATCCCGAT
CCCAACAAACCCTTTGCCAAAATGGAGAACCCACCGCTTTTCAACAACGA
GGGCAAGCTAAACCCCTCGATAACCATACTGGGCTGTTTCGTGCAGGTGC
CCGCCGAGAAAATCCTGCTGAACAGCATTGTACTGCCGCACAAGGAGCTC
AGTCGCAGCTTCAAAAACGAGATCATCTTGTGAAAGCTTTCTAGACCAT
BS11805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8207-RA | 1317 | CG8207-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8207-RA | 1562 | CG8207-RA | 129..1446 | 16..1333 | 6590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15677812..15678516 | 967..263 | 3525 | 100 | Minus |
| 2R | 25286936 | 2R | 15677488..15677754 | 1233..967 | 1335 | 100 | Minus |
| 2R | 25286936 | 2R | 15678578..15678828 | 266..16 | 1255 | 100 | Minus |
| 2R | 25286936 | 2R | 15677334..15677435 | 1333..1232 | 510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 234..276 | 122 | 79.1 | Plus |
BS11805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:59 Download gff for
BS11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:45 Download gff for
BS11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 107..1440 | 9..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:06 Download gff for
BS11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 130..1445 | 17..1332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:00 Download gff for
BS11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 107..1440 | 9..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:11 Download gff for
BS11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 130..1445 | 17..1332 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:11 Download gff for
BS11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15677335..15677434 | 1233..1332 | 100 | <- | Minus |
| 2R | 15677489..15677753 | 968..1232 | 100 | <- | Minus |
| 2R | 15677812..15678514 | 265..967 | 100 | <- | Minus |
| 2R | 15678580..15678827 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:06 Download gff for
BS11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11564840..11564939 | 1233..1332 | 100 | <- | Minus |
| arm_2R | 11564994..11565258 | 968..1232 | 100 | <- | Minus |
| arm_2R | 11565317..11566019 | 265..967 | 100 | <- | Minus |
| arm_2R | 11566085..11566332 | 17..264 | 100 | | Minus |
BS11805.pep Sequence
Translation from 16 to 1332
> BS11805.pep
MLKAVILIGGPQKGTRFRPLSLDTPKPLFPLAGRPLIAHHIEACAQLPDI
REILIIGYYPQTQMEGFVGDMQALYSSSNINIRYLQEFTALGTAGGMYHF
RDQIRAGNPRAFFVLNGDVCADFPLQELCDFHEKRPASALVTIMSTEATR
QQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCSMDIFTVLAQ
IFHSRGQEYSCQAFCNGNGNGNGREQGHIKWEQEVLTPLAGTDKLFAMPV
PNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTV
HPDVYVHPSATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDH
TLVLHSIVGRGSTIGAWARVEGTPSDPDPNKPFAKMENPPLFNNEGKLNP
SITILGCFVQVPAEKILLNSIVLPHKELSRSFKNEIIL*
BS11805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8207-PA | 438 | CG8207-PA | 1..438 | 1..438 | 2324 | 100 | Plus |
| CG1129-PE | 369 | CG1129-PE | 12..361 | 3..431 | 386 | 27.9 | Plus |
| CG1129-PD | 369 | CG1129-PD | 12..361 | 3..431 | 386 | 27.9 | Plus |
| CG1129-PA | 369 | CG1129-PA | 12..361 | 3..431 | 386 | 27.9 | Plus |
| CG1129-PB | 369 | CG1129-PB | 12..361 | 3..431 | 386 | 27.9 | Plus |
