BS11806.complete Sequence
1700 bp assembled on 2008-08-14
GenBank Submission: FJ638837
> BS11806.complete
GAAGTTATCAGTCGACATGTTTACACTTGCTTCATATTGGCGCGAATCAT
TCAAGATTGTTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAG
GCAGGTCCTTCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCC
CAAAAGTGACCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTT
TGTTGGTTTCTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCAC
TTGGAACACCAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTT
TCGAAAGAAACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAAT
CCAGCCTAGGCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAG
GACAACTGGGCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATT
ACCCTTAACTGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTA
TCAGGCACTACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAG
TGTCGCGCCCTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGA
AAAGTTACCACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTG
ACTTTGCTCCGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAG
GCACTGCCCAAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGT
CCCCTTGTGGGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCC
GCAACAAGATCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCA
GTTGTGCGGCATCCTCATGGAACTGGCTGCAAGAATGTGAATACCGTGGA
CTGGTCAGCTGCTTATGCTTCGCTGCAGTGCGACATGGAAGTGGACGAGG
TGCAGTGGGCCAAGCCGGGGTATAAAGCAGCCTGCCAGCAGCTCTACGAG
TTCTGCAGTCGTCGTTTGCGCCATTTCAATGACAAACGAAACGATCCCAC
GGCAGACGCCTTGTCCGGACTCTCGCCGTGGCTGCACTTTGGTCATATTT
CGGCTCAGCGCTGTGCACTGGAGGTGCAGCGGTTTCGAGGACAACACAAA
GCCTCGGCGGATGCGTTTTGCGAGGAGGCCATTGTGCGCCGCGAACTGGC
GGATAACTTTTGCTTCTACAACGAGCACTATGATAGTCTTAAAGGTCTAA
GTTCTTGGGCATATCAAACGCTAGATGCACATCGCAAGGACAAGCGAGAT
CCCTGCTACAGCTTAGAAGAACTAGAAAAGTCTCTCACTTATGACGACCT
GTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCT
TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCG
GAGCATGCGTTGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGA
TGGTCGCGACCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGCGGCG
TCCATGACATGGGCTGGAAGGAGCGGGCTATCTTCGGTAAGGTTAGGTAC
ATGAACTATCAGGGATGCCGTCGCAAATTCGATGTAAATGCCTTTGTCAT
GCGATACGGCGGTAAGGTGCACAAGAAGAAATAAAAGCTTTCTAGACCAT
BS11806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr-RA | 1668 | CG11205-PA | 1..1668 | 17..1684 | 8340 | 100 | Plus |
| phr-RB | 1608 | CG11205-PB | 1..1608 | 77..1684 | 8040 | 100 | Plus |
| CG18853-RA | 993 | CG18853-PA | 507..993 | 1198..1684 | 2435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr-RA | 1915 | CG11205-RA | 216..1885 | 17..1686 | 8350 | 100 | Plus |
| phr-RB | 1737 | CG11205-RB | 80..1707 | 59..1686 | 8140 | 100 | Plus |
| CG18853-RA | 1157 | CG18853-RA | 639..1127 | 1198..1686 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7825600..7826871 | 59..1330 | 6360 | 100 | Plus |
| 2R | 25286936 | 2R | 7826932..7827289 | 1329..1686 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 7830042..7830399 | 1329..1686 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 7829849..7829981 | 1198..1330 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 7825504..7825547 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:04 has no hits.
BS11806.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:28 Download gff for
BS11806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 8..1692 | 9..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:01 Download gff for
BS11806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 222..1874 | 23..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:10 Download gff for
BS11806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 19..1671 | 23..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:42 Download gff for
BS11806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 222..1874 | 23..1675 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:42 Download gff for
BS11806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7825510..7825545 | 23..58 | 100 | -> | Plus |
| 2R | 7825600..7826871 | 59..1330 | 100 | -> | Plus |
| 2R | 7826934..7827278 | 1331..1675 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:01 Download gff for
BS11806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3713015..3713050 | 23..58 | 100 | -> | Plus |
| arm_2R | 3713105..3714376 | 59..1330 | 100 | -> | Plus |
| arm_2R | 3714439..3714783 | 1331..1675 | 100 | | Plus |
BS11806.pep Sequence
Translation from 16 to 1683
> BS11806.pep
MFTLASYWRESFKIVLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSDQE
SSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKKRV
RVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVV
FCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQF
VKSKDIGAVVCDFAPLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVA
SDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKNVNTVDWSAAY
ASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS
GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCF
YNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQ
LQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPN
GYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYGGK
VHKKK*
BS11806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr-PA | 555 | CG11205-PA | 1..555 | 1..555 | 2964 | 100 | Plus |
| phr-PB | 535 | CG11205-PB | 1..535 | 21..555 | 2861 | 100 | Plus |
| CG18853-PA | 330 | CG18853-PA | 170..330 | 395..555 | 899 | 100 | Plus |
