Clone Sequence Records
BS11809.3prime Sequence
357 bp (357 high quality bases) assembled on 2006-06-16
> BS11809.3prime
ATGGTCTAGAAAGCTTTTATCCAGCAGCGGACTTCAGGGCTCCGGGGCTC
AGTTTCCGGTTCTTGATCTGGTAACGGGCCTTGTAACCATCCTTGTCGGC
GGTGTACATCGTCACAGTCTCGGTGTCAGTCTTTTCATCGTACGAGGAGT
ACATACCCATGACCACCAGTTGCTCGTCGGGAGTGCCGGGGTTCATGATC
ACGCCCATCTCCTCGCGCTTGCTGCCATTTGGCTCCTCCGACGCGAAGCG
GTATCCCTCCTTGGTCGGCGCCTGGTTGTAATACTCCGACACAATGGTGG
GGAAGACGTAGTCCAGAAGTCCCGCCGAGCTGTGGGCGGCCATGTCGACT
GATAACT
BS11809.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-PA | 327 | CG15515-RA | 1..327 | 343..17 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 472 | CG15515-RB | 80..406 | 343..17 | 1635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29906157..29906382 | 242..17 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 29905999..29906101 | 343..241 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 10:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 5550..5622 | 154..82 | 113 | 65.3 | Minus |
BS11809.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:32 Download gff for
BS11809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-PA | 1..327 | 17..343 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:52 Download gff for
BS11809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..418 | 5..343 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:22 Download gff for
BS11809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..418 | 5..343 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:22 Download gff for
BS11809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29905999..29906099 | 243..343 | 100 | -> | Minus |
3R | 29906157..29906394 | 5..242 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:52 Download gff for
BS11809.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25731721..25731821 | 243..343 | 100 | -> | Minus |
arm_3R | 25731879..25732116 | 5..242 | 98 | | Minus |
BS11809.5prime Sequence
357 bp (357 high quality bases) assembled on 2006-06-16
> BS11809.5prime
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGATAAAAGCTTT
CTAGACC
BS11809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-PA | 327 | CG15515-RA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 472 | CG15515-RB | 80..406 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29906157..29906382 | 118..343 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 29905999..29906101 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 03:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 5550..5622 | 206..278 | 113 | 65.3 | Plus |
BS11809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:32 Download gff for
BS11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-PA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:50 Download gff for
BS11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..418 | 17..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:46 Download gff for
BS11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..418 | 17..355 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:46 Download gff for
BS11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29905999..29906099 | 17..117 | 100 | -> | Plus |
3R | 29906157..29906394 | 118..355 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:50 Download gff for
BS11809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25731721..25731821 | 17..117 | 100 | -> | Plus |
arm_3R | 25731879..25732116 | 118..355 | 98 | | Plus |
BS11809.complete Sequence
359 bp assembled on 2006-11-01
GenBank Submission: FJ636977
> BS11809.complete
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGATAAAAGCTTT
CTAGACCAT
BS11809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 372 | CG15515-PB | 46..372 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-RB | 472 | CG15515-RB | 80..406 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29906157..29906382 | 118..343 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 29905999..29906101 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 5550..5622 | 206..278 | 113 | 65.3 | Plus |
BS11809.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:01 Download gff for
BS11809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:08 Download gff for
BS11809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RA | 534..872 | 17..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:42 Download gff for
BS11809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..404 | 17..341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:01 Download gff for
BS11809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RA | 534..872 | 17..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:43 Download gff for
BS11809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15515-RB | 80..404 | 17..341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:43 Download gff for
BS11809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29905999..29906099 | 17..117 | 100 | -> | Plus |
3R | 29906157..29906380 | 118..341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:42 Download gff for
BS11809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25731721..25731821 | 17..117 | 100 | -> | Plus |
arm_3R | 25731879..25732102 | 118..341 | 100 | | Plus |
BS11809.pep Sequence
Translation from 16 to 342
> BS11809.pep
MAAHSSAGLLDYVFPTIVSEYYNQAPTKEGYRFASEEPNGSKREEMGVIM
NPGTPDEQLVVMGMYSSYDEKTDTETVTMYTADKDGYKARYQIKNRKLSP
GALKSAAG*
BS11809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15515-PB | 123 | CG15515-PB | 16..123 | 1..108 | 561 | 100 | Plus |