Clone BS11809 Report

Search the DGRC for BS11809

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG15515-RA
Protein status:BS11809.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11809.3prime Sequence

357 bp (357 high quality bases) assembled on 2006-06-16

> BS11809.3prime
ATGGTCTAGAAAGCTTTTATCCAGCAGCGGACTTCAGGGCTCCGGGGCTC
AGTTTCCGGTTCTTGATCTGGTAACGGGCCTTGTAACCATCCTTGTCGGC
GGTGTACATCGTCACAGTCTCGGTGTCAGTCTTTTCATCGTACGAGGAGT
ACATACCCATGACCACCAGTTGCTCGTCGGGAGTGCCGGGGTTCATGATC
ACGCCCATCTCCTCGCGCTTGCTGCCATTTGGCTCCTCCGACGCGAAGCG
GTATCCCTCCTTGGTCGGCGCCTGGTTGTAATACTCCGACACAATGGTGG
GGAAGACGTAGTCCAGAAGTCCCGCCGAGCTGTGGGCGGCCATGTCGACT
GATAACT

BS11809.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-PA 327 CG15515-RA 1..327 343..17 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 472 CG15515-RB 80..406 343..17 1635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29906157..29906382 242..17 1130 100 Minus
3R 32079331 3R 29905999..29906101 343..241 515 100 Minus
Blast to na_te.dros performed 2015-02-06 10:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 5550..5622 154..82 113 65.3 Minus

BS11809.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:32 Download gff for BS11809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-PA 1..327 17..343 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:52 Download gff for BS11809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..418 5..343 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:22 Download gff for BS11809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..418 5..343 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:22 Download gff for BS11809.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29905999..29906099 243..343 100 -> Minus
3R 29906157..29906394 5..242 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:52 Download gff for BS11809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25731721..25731821 243..343 100 -> Minus
arm_3R 25731879..25732116 5..242 98   Minus

BS11809.5prime Sequence

357 bp (357 high quality bases) assembled on 2006-06-16

> BS11809.5prime
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGATAAAAGCTTT
CTAGACC

BS11809.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-PA 327 CG15515-RA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 472 CG15515-RB 80..406 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29906157..29906382 118..343 1130 100 Plus
3R 32079331 3R 29905999..29906101 17..119 515 100 Plus
Blast to na_te.dros performed 2015-02-12 03:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 5550..5622 206..278 113 65.3 Plus

BS11809.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:32 Download gff for BS11809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-PA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:50 Download gff for BS11809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..418 17..355 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:46 Download gff for BS11809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..418 17..355 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:46 Download gff for BS11809.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29905999..29906099 17..117 100 -> Plus
3R 29906157..29906394 118..355 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:50 Download gff for BS11809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25731721..25731821 17..117 100 -> Plus
arm_3R 25731879..25732116 118..355 98   Plus

BS11809.complete Sequence

359 bp assembled on 2006-11-01

GenBank Submission: FJ636977

> BS11809.complete
GAAGTTATCAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACT
ACGTCTTCCCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAG
GAGGGATACCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGA
GATGGGCGTGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCA
TGGGTATGTACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACG
ATGTACACCGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAA
CCGGAAACTGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGATAAAAGCTTT
CTAGACCAT

BS11809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 372 CG15515-PB 46..372 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-RB 472 CG15515-RB 80..406 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29906157..29906382 118..343 1130 100 Plus
3R 32079331 3R 29905999..29906101 17..119 515 100 Plus
Blast to na_te.dros performed 2014-11-27 20:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 5550..5622 206..278 113 65.3 Plus

BS11809.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:01 Download gff for BS11809.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RA 1..327 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:08 Download gff for BS11809.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RA 534..872 17..355 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:42 Download gff for BS11809.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..404 17..341 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:01 Download gff for BS11809.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RA 534..872 17..355 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:43 Download gff for BS11809.complete
Subject Subject Range Query Range Percent Splice Strand
CG15515-RB 80..404 17..341 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:43 Download gff for BS11809.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29905999..29906099 17..117 100 -> Plus
3R 29906157..29906380 118..341 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:42 Download gff for BS11809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25731721..25731821 17..117 100 -> Plus
arm_3R 25731879..25732102 118..341 100   Plus

BS11809.pep Sequence

Translation from 16 to 342

> BS11809.pep
MAAHSSAGLLDYVFPTIVSEYYNQAPTKEGYRFASEEPNGSKREEMGVIM
NPGTPDEQLVVMGMYSSYDEKTDTETVTMYTADKDGYKARYQIKNRKLSP
GALKSAAG*

BS11809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15515-PB 123 CG15515-PB 16..123 1..108 561 100 Plus