Clone Sequence Records
BS11811.3prime Sequence
585 bp (585 high quality bases) assembled on 2006-06-16
> BS11811.3prime
ATGGTCTAGAAAGCTTCTAATTGGTGGGGGAAATGGGGGTGCGATAGGAG
TATCCAGGTTTTGGTGTCGTCAAGATGGGTGGTTGTGTTACGGATGTGGT
GCTCTCTATTGGGATCACTGAAGTGGTAGTGGCTGGTGGCTCGGGATGTA
TTGTGGGGATCGGCGTTTCGACAAAACTTTCTGTTGTTGTCGAGTAAAAA
AGTTGAGTAGTCCTACTAGATTCATCCGGAGTAAAGTCTGTGTTTACCTC
GGTGGTATGGTGTGTCACAGGCCTTTCGGTGGTGCTCGTGGCGCTTGTGG
GGCCAAATAAATTGACAGACTTATTGAAACCAATACGGAACCCCCCGGAA
GAAGACTTGGTCTGTAGCACGCTGTTCAACAGTTGAATTTTTGATGAGAT
AAGACCAGAGATAAGCTGACTGGTGAAAGGCGATGCTCCCACTGTATTTT
GGTAACTGGCACTGGAGTAGCCACCGCTGGGAGCGAAAACCTTAATAAGG
ACAGGTTTTCCTTCTGCAATGATGGCCCCACTGAGGGCGATAAGAACACC
AATCGATATAGTTTTCAACATGTCGACTGATAACT
BS11811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 669 | CG40198-RB | 28..583 | 572..17 | 2780 | 100 | Minus |
CG40198-RC | 1567 | CG40198-RC | 28..583 | 572..17 | 2780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4161594..4162049 | 17..472 | 2280 | 100 | Plus |
3R | 32079331 | 3R | 4162107..4162208 | 471..572 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:11:07 has no hits.
BS11811.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:54 Download gff for
BS11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..583 | 17..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:23 Download gff for
BS11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..583 | 17..579 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:23 Download gff for
BS11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4161594..4162048 | 17..471 | 100 | <- | Plus |
3R | 4162108..4162211 | 472..579 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:54 Download gff for
BS11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 2505360..2505814 | 17..471 | 100 | <- | Plus |
3RHet | 2505874..2505977 | 472..579 | 96 | | Plus |
BS11811.5prime Sequence
585 bp (585 high quality bases) assembled on 2006-06-16
> BS11811.5prime
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATTAGAAGCTTTCTAGACC
BS11811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:17 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 669 | CG40198-RB | 28..583 | 16..571 | 2780 | 100 | Plus |
CG40198-RC | 1567 | CG40198-RC | 28..583 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4161594..4162049 | 571..116 | 2280 | 100 | Minus |
3R | 32079331 | 3R | 4162107..4162208 | 117..16 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:38:09 has no hits.
BS11811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:22 Download gff for
BS11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..583 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:32 Download gff for
BS11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 22..583 | 9..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:32 Download gff for
BS11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4161594..4162048 | 117..571 | 100 | <- | Minus |
3R | 4162108..4162211 | 9..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:22 Download gff for
BS11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 2505360..2505814 | 117..571 | 100 | <- | Minus |
3RHet | 2505874..2505977 | 9..116 | 96 | | Minus |
BS11811.complete Sequence
587 bp assembled on 2006-11-01
GenBank Submission: KX802107
> BS11811.complete
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATTAGAAGCTTTCTAGACCAT
BS11811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 555 | CG40198-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
CG40198-RC | 555 | CG40198-PC | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-RB | 669 | CG40198-RB | 28..583 | 16..571 | 2780 | 100 | Plus |
CG40198-RC | 1567 | CG40198-RC | 28..583 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4161594..4162049 | 571..116 | 2280 | 100 | Minus |
3R | 32079331 | 3R | 4162107..4162208 | 117..16 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:06 has no hits.
BS11811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:50 Download gff for
BS11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RA | 267..828 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:18 Download gff for
BS11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RA | 267..828 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:25 Download gff for
BS11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 34..583 | 22..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:51 Download gff for
BS11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RA | 267..828 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:41 Download gff for
BS11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40198-RC | 34..583 | 22..571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:41 Download gff for
BS11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4161594..4162048 | 117..571 | 100 | <- | Minus |
3R | 4162108..4162202 | 22..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:25 Download gff for
BS11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3RHet | 2505360..2505814 | 117..571 | 100 | <- | Minus |
3RHet | 2505874..2505968 | 22..116 | 100 | | Minus |
BS11811.pep Sequence
Translation from 16 to 570
> BS11811.pep
MLKTISIGVLIALSGAIIAEGKPVLIKVFAPSGGYSSASYQNTVGASPFT
SQLISGLISSKIQLLNSVLQTKSSSGGFRIGFNKSVNLFGPTSATSTTER
PVTHHTTEVNTDFTPDESSRTTQLFYSTTTESFVETPIPTIHPEPPATTT
SVIPIESTTSVTQPPILTTPKPGYSYRTPISPTN*
BS11811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40198-PB | 184 | CG40198-PB | 1..184 | 1..184 | 929 | 100 | Plus |
CG40198-PC | 184 | CG40198-PC | 1..184 | 1..184 | 929 | 100 | Plus |