Clone BS11811 Report

Search the DGRC for BS11811

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG40198-RB
Protein status:BS11811.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11811.3prime Sequence

585 bp (585 high quality bases) assembled on 2006-06-16

> BS11811.3prime
ATGGTCTAGAAAGCTTCTAATTGGTGGGGGAAATGGGGGTGCGATAGGAG
TATCCAGGTTTTGGTGTCGTCAAGATGGGTGGTTGTGTTACGGATGTGGT
GCTCTCTATTGGGATCACTGAAGTGGTAGTGGCTGGTGGCTCGGGATGTA
TTGTGGGGATCGGCGTTTCGACAAAACTTTCTGTTGTTGTCGAGTAAAAA
AGTTGAGTAGTCCTACTAGATTCATCCGGAGTAAAGTCTGTGTTTACCTC
GGTGGTATGGTGTGTCACAGGCCTTTCGGTGGTGCTCGTGGCGCTTGTGG
GGCCAAATAAATTGACAGACTTATTGAAACCAATACGGAACCCCCCGGAA
GAAGACTTGGTCTGTAGCACGCTGTTCAACAGTTGAATTTTTGATGAGAT
AAGACCAGAGATAAGCTGACTGGTGAAAGGCGATGCTCCCACTGTATTTT
GGTAACTGGCACTGGAGTAGCCACCGCTGGGAGCGAAAACCTTAATAAGG
ACAGGTTTTCCTTCTGCAATGATGGCCCCACTGAGGGCGATAAGAACACC
AATCGATATAGTTTTCAACATGTCGACTGATAACT

BS11811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 669 CG40198-RB 28..583 572..17 2780 100 Minus
CG40198-RC 1567 CG40198-RC 28..583 572..17 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4161594..4162049 17..472 2280 100 Plus
3R 32079331 3R 4162107..4162208 471..572 510 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:11:07 has no hits.

BS11811.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:54 Download gff for BS11811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..583 17..579 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:23 Download gff for BS11811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..583 17..579 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:23 Download gff for BS11811.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4161594..4162048 17..471 100 <- Plus
3R 4162108..4162211 472..579 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:54 Download gff for BS11811.3prime
Subject Subject Range Query Range Percent Splice Strand
3RHet 2505360..2505814 17..471 100 <- Plus
3RHet 2505874..2505977 472..579 96   Plus

BS11811.5prime Sequence

585 bp (585 high quality bases) assembled on 2006-06-16

> BS11811.5prime
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATTAGAAGCTTTCTAGACC

BS11811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:17 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 669 CG40198-RB 28..583 16..571 2780 100 Plus
CG40198-RC 1567 CG40198-RC 28..583 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4161594..4162049 571..116 2280 100 Minus
3R 32079331 3R 4162107..4162208 117..16 510 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:38:09 has no hits.

BS11811.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:22 Download gff for BS11811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..583 9..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:32 Download gff for BS11811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 22..583 9..571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:32 Download gff for BS11811.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4161594..4162048 117..571 100 <- Minus
3R 4162108..4162211 9..116 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:22 Download gff for BS11811.5prime
Subject Subject Range Query Range Percent Splice Strand
3RHet 2505360..2505814 117..571 100 <- Minus
3RHet 2505874..2505977 9..116 96   Minus

BS11811.complete Sequence

587 bp assembled on 2006-11-01

GenBank Submission: KX802107

> BS11811.complete
GAAGTTATCAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCG
CCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTT
TTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGG
AGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAA
TTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTC
CGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCAC
GAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAG
ACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACA
ACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCC
ACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAA
CACAACCACCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACC
CCCATTTCCCCCACCAATTAGAAGCTTTCTAGACCAT

BS11811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 555 CG40198-PB 1..555 17..571 2775 100 Plus
CG40198-RC 555 CG40198-PC 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-RB 669 CG40198-RB 28..583 16..571 2780 100 Plus
CG40198-RC 1567 CG40198-RC 28..583 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4161594..4162049 571..116 2280 100 Minus
3R 32079331 3R 4162107..4162208 117..16 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:11:06 has no hits.

BS11811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:50 Download gff for BS11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RA 267..828 9..571 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:18 Download gff for BS11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RA 267..828 9..571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:25 Download gff for BS11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 34..583 22..571 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:51 Download gff for BS11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RA 267..828 9..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:41 Download gff for BS11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG40198-RC 34..583 22..571 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:41 Download gff for BS11811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4161594..4162048 117..571 100 <- Minus
3R 4162108..4162202 22..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:25 Download gff for BS11811.complete
Subject Subject Range Query Range Percent Splice Strand
3RHet 2505360..2505814 117..571 100 <- Minus
3RHet 2505874..2505968 22..116 100   Minus

BS11811.pep Sequence

Translation from 16 to 570

> BS11811.pep
MLKTISIGVLIALSGAIIAEGKPVLIKVFAPSGGYSSASYQNTVGASPFT
SQLISGLISSKIQLLNSVLQTKSSSGGFRIGFNKSVNLFGPTSATSTTER
PVTHHTTEVNTDFTPDESSRTTQLFYSTTTESFVETPIPTIHPEPPATTT
SVIPIESTTSVTQPPILTTPKPGYSYRTPISPTN*

BS11811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG40198-PB 184 CG40198-PB 1..184 1..184 929 100 Plus
CG40198-PC 184 CG40198-PC 1..184 1..184 929 100 Plus