BS11812.complete Sequence
1226 bp assembled on 2006-11-01
GenBank Submission: FJ636978
> BS11812.complete
GAAGTTATCAGTCGACATGCCGCCCAAGAAGCACGACGAACCGGAGCGCA
AGCCGCTGATCGGCAGAATTGGAACGAATCTGAGAATCGGTATCGTTGGC
GTTCCCAACGTGGGCAAGTCCACTTTTTTCAACGTTCTGACCCAAAGTGC
CGCCCCCGCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAGTC
GTGTTCCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAG
CCGGCCAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTT
GGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGGCAACGACTTCCTCTCGC
ACATCAGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGAT
CCGGATGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGA
GATCATCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGA
ACTTGGACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTC
AAGCCCGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCA
GAAGCGTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCT
TGAACAAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGAAC
CTTTCGGACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAAGAT
CAAGGAATGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCTTCT
CCGGCGCCTTCGAGCACCAGCTGACCGAAAAGGACGAACTGGAGCGCAAG
GCCTACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGT
GACCGGCTACAAGGGACTGCAGCTGGAGTACTTCTTCACCGCCGGGCCGG
ATGAAGTGAAGGCCTGGACCATCCAGAAGGGCACCAAGGCTCCCCAGGCT
GCCGGACGCATTCACACCGACTTCGAGAAGGGCTTCATTATGGCCGAGGT
GATGCACTTCGAGGACTTCAAGGCGGAGGGCAGTGAGGCGAATGCCAAGG
CCGCTGGCAAATATCGCCAACAGGGACGCAACTACACCGTCGAGGATGGC
GACATCATATTCTTTAAGTTCAACGCCGGCGCTGGCCTCAAGGATGCCAA
GAAGAAATGAAAGCTTTCTAGACCAT
BS11812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RE | 1194 | CG1354-PE | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| CG1354-RA | 1194 | CG1354-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| CG1354-RD | 1194 | CG1354-PD | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RE | 1491 | CG1354-RE | 105..1298 | 17..1210 | 5970 | 100 | Plus |
| CG1354-RA | 1498 | CG1354-RA | 115..1308 | 17..1210 | 5970 | 100 | Plus |
| CG1354-RD | 1684 | CG1354-RD | 125..1318 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9781159..9781728 | 641..1210 | 2850 | 100 | Plus |
| X | 23542271 | X | 9780509..9780892 | 257..640 | 1920 | 100 | Plus |
| X | 23542271 | X | 9779062..9779242 | 17..197 | 905 | 100 | Plus |
| X | 23542271 | X | 9780241..9780301 | 198..258 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:03:06 has no hits.
BS11812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:19 Download gff for
BS11812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RA | 1..1194 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:42 Download gff for
BS11812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RA | 111..1303 | 17..1209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:01 Download gff for
BS11812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RD | 125..1317 | 17..1209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:19 Download gff for
BS11812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RA | 101..1311 | 7..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:06 Download gff for
BS11812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RD | 125..1317 | 17..1209 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:06 Download gff for
BS11812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9779062..9779246 | 17..201 | 98 | -> | Plus |
| X | 9780245..9780301 | 202..258 | 100 | -> | Plus |
| X | 9780511..9780892 | 259..640 | 100 | -> | Plus |
| X | 9781159..9781727 | 641..1209 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:01 Download gff for
BS11812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9673095..9673279 | 17..201 | 98 | -> | Plus |
| arm_X | 9674278..9674334 | 202..258 | 100 | -> | Plus |
| arm_X | 9674544..9674925 | 259..640 | 100 | -> | Plus |
| arm_X | 9675192..9675760 | 641..1209 | 100 | | Plus |
BS11812.pep Sequence
Translation from 16 to 1209
> BS11812.pep
MPPKKHDEPERKPLIGRIGTNLRIGIVGVPNVGKSTFFNVLTQSAAPAEN
FPFCTIKPNESRVPVPDERFDYLVEYHKPASVVPAYLNVVDIAGLVKGAA
EGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRDLEIISEE
LRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILIDQKRHLR
FEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLPKIKEWID
KNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYKG
LQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFED
FKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKKK*
BS11812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-PE | 397 | CG1354-PE | 1..397 | 1..397 | 2086 | 100 | Plus |
| CG1354-PA | 397 | CG1354-PA | 1..397 | 1..397 | 2086 | 100 | Plus |
| CG1354-PD | 397 | CG1354-PD | 1..397 | 1..397 | 2086 | 100 | Plus |
| CG1354-PC | 397 | CG1354-PC | 1..397 | 1..397 | 2086 | 100 | Plus |
| CG1354-PB | 348 | CG1354-PB | 13..348 | 62..397 | 1761 | 100 | Plus |
