Clone Sequence Records
BS11814.3prime Sequence
546 bp (546 high quality bases) assembled on 2006-06-16
> BS11814.3prime
ATGGTCTAGAAAGCTTTCAGATGGTGTACACCAGAACTGATCCAGAGCGG
ATAATCTGAGCGGATCGAAGCTTCTCTGGGGTCGGACGACGACTGAGGAG
GCGTTCGTTACGAGGCTGGATCAAGCCGGCGGGCACGGGATCGGCAGCAG
GGGCCTGGTCCACTGGGCCATCAGCCGGCGGTCCATAGGTGTTTTCCGGC
TCAGCAGGTGGTCCGTAAGTGTTATCGGGAGGGCCGTAGGTGTTGTCGGG
CTCATCTGGGGGTCCGTAGGTAAGATCAGGTTGCGCTTCAGTCTCCGTGG
GCAGGTCGAAGGGCACCTCCGGTGTCACTCCTGCTGGCGGATAAGGGGCT
GAGGCCGGCGTAGGTGCAATATCCACGGCGGGGTCGGCCGGAACTGCCTG
ATCCCCTGGAGCCTGCTCCTGACGGGCAAACTGCAGGCGGGAAAATCGTC
CCCGGAATCTGGTAGGCTCTGCAACAGAAACGGCAGCCATGGCTGCGATC
AGGAGCAGGGAGCAGATGAACTTGTGGGCCATGTCGACTGATAACT
BS11814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-PA | 516 | CG14568-RA | 1..516 | 532..17 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 682 | CG14568-RA | 34..553 | 534..15 | 2600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21732935..21733454 | 15..534 | 2600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:59:28 has no hits.
BS11814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:33 Download gff for
BS11814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-PA | 1..516 | 17..532 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:05 Download gff for
BS11814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..553 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:36 Download gff for
BS11814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..553 | 15..546 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:36 Download gff for
BS11814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21732935..21733466 | 15..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:05 Download gff for
BS11814.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21726035..21726566 | 15..546 | 99 | | Plus |
BS11814.5prime Sequence
546 bp (546 high quality bases) assembled on 2006-06-16
> BS11814.5prime
GAAGTTATCAGTCGACATGGCCCACAAGTTCATCTGCTCCCTGCTCCTGA
TCGCAGCCATGGCTGCCGTTTCTGTTGCAGAGCCTACCAGATTCCGGGGA
CGATTTTCCCGCCTGCAGTTTGCCCGTCAGGAGCAGGCTCCAGGGGATCA
GGCAGTTCCGGCCGACCCCGCCGTGGATATTGCACCTACGCCGGCCTCAG
CCCCTTATCCGCCAGCAGGAGTGACACCGGAGGTGCCCTTCGACCTGCCC
ACGGAGACTGAAGCGCAACCTGATCTTACCTACGGACCCCCAGATGAGCC
CGACAACACCTACGGCCCTCCCGATAACACTTACGGACCACCTGCTGAGC
CGGAAAACACCTATGGACCGCCGGCTGATGGCCCAGTGGACCAGGCCCCT
GCTGCCGATCCCGTGCCCGCCGGCTTGATCCAGCCTCGTAACGAACGCCT
CCTCAGTCGTCGTCCGACCCCAGAGAAGCTTCGATCCGCTCAGATTATCC
GCTCTGGATCAGTTCTGGTGTACACCATCTGAAAGCTTTCTAGACC
BS11814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-PA | 516 | CG14568-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 682 | CG14568-RA | 34..553 | 15..534 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21732935..21733454 | 534..15 | 2600 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:03:58 has no hits.
BS11814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:33 Download gff for
BS11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:17 Download gff for
BS11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..553 | 3..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:01 Download gff for
BS11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 22..553 | 3..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:01 Download gff for
BS11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21732935..21733466 | 3..534 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:17 Download gff for
BS11814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21726035..21726566 | 3..534 | 99 | | Minus |
BS11814.complete Sequence
548 bp assembled on 2006-11-01
GenBank Submission: FJ636979
> BS11814.complete
GAAGTTATCAGTCGACATGGCCCACAAGTTCATCTGCTCCCTGCTCCTGA
TCGCAGCCATGGCTGCCGTTTCTGTTGCAGAGCCTACCAGATTCCGGGGA
CGATTTTCCCGCCTGCAGTTTGCCCGTCAGGAGCAGGCTCCAGGGGATCA
GGCAGTTCCGGCCGACCCCGCCGTGGATATTGCACCTACGCCGGCCTCAG
CCCCTTATCCGCCAGCAGGAGTGACACCGGAGGTGCCCTTCGACCTGCCC
ACGGAGACTGAAGCGCAACCTGATCTTACCTACGGACCCCCAGATGAGCC
CGACAACACCTACGGCCCTCCCGATAACACTTACGGACCACCTGCTGAGC
CGGAAAACACCTATGGACCGCCGGCTGATGGCCCAGTGGACCAGGCCCCT
GCTGCCGATCCCGTGCCCGCCGGCTTGATCCAGCCTCGTAACGAACGCCT
CCTCAGTCGTCGTCCGACCCCAGAGAAGCTTCGATCCGCTCAGATTATCC
GCTCTGGATCAGTTCTGGTGTACACCATCTGAAAGCTTTCTAGACCAT
BS11814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 516 | CG14568-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-RA | 682 | CG14568-RA | 34..553 | 15..534 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21732935..21733454 | 534..15 | 2600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:49:17 has no hits.
BS11814.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:23 Download gff for
BS11814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:18 Download gff for
BS11814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 19..550 | 3..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:32 Download gff for
BS11814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 36..550 | 17..531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:23 Download gff for
BS11814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 19..550 | 3..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:42 Download gff for
BS11814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14568-RA | 36..550 | 17..531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:42 Download gff for
BS11814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21732938..21733452 | 17..531 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:32 Download gff for
BS11814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21726038..21726552 | 17..531 | 100 | | Minus |
BS11814.pep Sequence
Translation from 16 to 531
> BS11814.pep
MAHKFICSLLLIAAMAAVSVAEPTRFRGRFSRLQFARQEQAPGDQAVPAD
PAVDIAPTPASAPYPPAGVTPEVPFDLPTETEAQPDLTYGPPDEPDNTYG
PPDNTYGPPAEPENTYGPPADGPVDQAPAADPVPAGLIQPRNERLLSRRP
TPEKLRSAQIIRSGSVLVYTI*
BS11814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14568-PA | 171 | CG14568-PA | 1..171 | 1..171 | 905 | 100 | Plus |
| CG14569-PA | 195 | CG14569-PA | 11..114 | 10..139 | 217 | 42.5 | Plus |
| CG14570-PA | 228 | CG14570-PA | 14..166 | 6..159 | 199 | 33.7 | Plus |
| CG14566-PB | 166 | CG14566-PB | 6..121 | 9..126 | 163 | 40.6 | Plus |
| CG14566-PA | 166 | CG14566-PA | 6..121 | 9..126 | 163 | 40.6 | Plus |
