Clone BS11815 Report

Search the DGRC for BS11815

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG10903-RA
Protein status:BS11815.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11815.3prime Sequence

786 bp (785 high quality bases) assembled on 2006-06-16

> BS11815.3prime
ATGGTCTAGAAAGCTTTCAAAATTTGCCGCTGCGCTTGCGTGCAGTGTAC
TTTGTGTCAGGACGGGTTTCCAACCCCTGGCGACGTCGACGCTCTTTCTT
GGCTAGGATCCAATCGCGGGATTTCTTTGGCGCTTTTCCCCGAGCCTCAC
GGCAAGCATCACGTTTCTTTATATAGTTTACACGACGTTCCTCTTCAGGT
GAGCCCAAAGCCTGCGGCAGCTCAGCAGATCCTCCAGTCATGAGCACCAG
GTAGTACTTCTTAGCCTTGGCAGAGTTTGGATAGTCGACAACCAATCCTC
CGTAGAATCCCGCCTTCATGGCTTGCGAGGTTACCATCTCGATCTGATCG
GAGTTCTCCGGATAAAATTGAAAGACAGCTCGCGCGGTGCGTGTCAGACA
GGAAAACAAGGTGGTAAAGAACTTCAGCAGGCGCTTGTGGGGATTGTGAT
ACGACTTGTCCGCATTGCAGAGCCATTGGAGGGCAGAGATCGAGATGGCG
CCGTCGAAAGTGCCCGGCTTAAAGGGCATTCCCTCGCCCATGTCTCCCAG
AATGACATCCCCAGCAACCTCGCGTTCCACGGCGATATCGAGCATAGACT
TGGAAATATCTATGCCGATCCACATGTGCTCGCTGTCCTCAAGAACGCTA
CCTGAGAGTCCAGAACCACAGCCGATGTCCAAAATCAACCGAGACTCATC
ATCATCCGGGAGCGCCAATAGTTCCAAGGCACGTTCGGCCATTTCTACTT
GGATCTCAATGATGCGGGTGTTTGTGGAATATTTCT

BS11815.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-PA 831 CG10903-RA 62..831 786..17 3850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 1164 CG10903-RB 219..989 786..16 3855 100 Minus
CG10903-RA 1124 CG10903-RA 179..949 786..16 3855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8031146..8031712 770..204 2835 100 Minus
3R 32079331 3R 8031781..8031970 205..16 950 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:15:25 has no hits.

BS11815.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:34 Download gff for BS11815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-PA 62..831 17..786 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:14 Download gff for BS11815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 179..949 16..786 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:54 Download gff for BS11815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 179..949 16..786 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:54 Download gff for BS11815.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8031068..8031083 771..786 100 -> Minus
3R 8031146..8031711 205..770 100 -> Minus
3R 8031782..8031970 16..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:14 Download gff for BS11815.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3856790..3856805 771..786 100 -> Minus
arm_3R 3856868..3857433 205..770 100 -> Minus
arm_3R 3857504..3857692 16..204 100   Minus

BS11815.5prime Sequence

861 bp (747 high quality bases) assembled on 2006-06-16

> BS11815.5prime
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAATTTTTGAAAG
CTTTCTAAACC

BS11815.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-PA 831 CG10903-RA 1..831 17..847 4130 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 1164 CG10903-RB 158..989 17..848 4145 99.9 Plus
CG10903-RA 1124 CG10903-RA 118..949 17..848 4145 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8031146..8031712 94..660 2835 100 Plus
3R 32079331 3R 8031781..8031970 659..848 935 99.5 Plus
3R 32079331 3R 8030944..8030982 17..55 195 100 Plus
3R 32079331 3R 8031046..8031083 56..93 190 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:40:05 has no hits.

BS11815.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:34 Download gff for BS11815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:56 Download gff for BS11815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 116..949 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:21 Download gff for BS11815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 116..949 14..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:21 Download gff for BS11815.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8030942..8030982 14..55 97 -> Plus
3R 8031046..8031083 56..93 100 -> Plus
3R 8031146..8031711 94..659 100 -> Plus
3R 8031782..8031970 660..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:56 Download gff for BS11815.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3856664..3856704 14..55 97 -> Plus
arm_3R 3856768..3856805 56..93 100 -> Plus
arm_3R 3856868..3857433 94..659 100 -> Plus
arm_3R 3857504..3857692 660..848 99   Plus

BS11815.complete Sequence

863 bp assembled on 2006-11-01

GenBank Submission: FJ636980

> BS11815.complete
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAAATTTTGAAAG
CTTTCTAGACCAT

BS11815.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 831 CG10903-PB 1..831 17..847 4155 100 Plus
CG10903-RA 831 CG10903-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-RB 1164 CG10903-RB 158..989 17..848 4160 100 Plus
CG10903-RA 1124 CG10903-RA 118..949 17..848 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8031146..8031712 94..660 2835 100 Plus
3R 32079331 3R 8031781..8031970 659..848 950 100 Plus
3R 32079331 3R 8030944..8030982 17..55 195 100 Plus
3R 32079331 3R 8031046..8031083 56..93 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:59 has no hits.

BS11815.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:25 Download gff for BS11815.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:20 Download gff for BS11815.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 114..947 14..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:46 Download gff for BS11815.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 118..947 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:25 Download gff for BS11815.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 114..947 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:19 Download gff for BS11815.complete
Subject Subject Range Query Range Percent Splice Strand
CG10903-RA 118..947 17..846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:19 Download gff for BS11815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8030944..8030982 17..55 100 -> Plus
3R 8031046..8031083 56..93 100 -> Plus
3R 8031146..8031711 94..659 100 -> Plus
3R 8031782..8031968 660..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:46 Download gff for BS11815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3856666..3856704 17..55 100 -> Plus
arm_3R 3856768..3856805 56..93 100 -> Plus
arm_3R 3857504..3857690 660..846 100   Plus
arm_3R 3856868..3857433 94..659 100 -> Plus

BS11815.pep Sequence

Translation from 16 to 846

> BS11815.pep
MARRPEHSAPPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDD
ESRLILDIGCGSGLSGSVLEDSEHMWIGIDISKSMLDIAVEREVAGDVIL
GDMGEGMPFKPGTFDGAISISALQWLCNADKSYHNPHKRLLKFFTTLFSC
LTRTARAVFQFYPENSDQIEMVTSQAMKAGFYGGLVVDYPNSAKAKKYYL
VLMTGGSAELPQALGSPEEERRVNYIKKRDACREARGKAPKKSRDWILAK
KERRRRQGLETRPDTKYTARKRSGKF*

BS11815.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10903-PB 276 CG10903-PB 1..276 1..276 1433 100 Plus
CG10903-PA 276 CG10903-PA 1..276 1..276 1433 100 Plus