Clone Sequence Records
BS11815.3prime Sequence
786 bp (785 high quality bases) assembled on 2006-06-16
> BS11815.3prime
ATGGTCTAGAAAGCTTTCAAAATTTGCCGCTGCGCTTGCGTGCAGTGTAC
TTTGTGTCAGGACGGGTTTCCAACCCCTGGCGACGTCGACGCTCTTTCTT
GGCTAGGATCCAATCGCGGGATTTCTTTGGCGCTTTTCCCCGAGCCTCAC
GGCAAGCATCACGTTTCTTTATATAGTTTACACGACGTTCCTCTTCAGGT
GAGCCCAAAGCCTGCGGCAGCTCAGCAGATCCTCCAGTCATGAGCACCAG
GTAGTACTTCTTAGCCTTGGCAGAGTTTGGATAGTCGACAACCAATCCTC
CGTAGAATCCCGCCTTCATGGCTTGCGAGGTTACCATCTCGATCTGATCG
GAGTTCTCCGGATAAAATTGAAAGACAGCTCGCGCGGTGCGTGTCAGACA
GGAAAACAAGGTGGTAAAGAACTTCAGCAGGCGCTTGTGGGGATTGTGAT
ACGACTTGTCCGCATTGCAGAGCCATTGGAGGGCAGAGATCGAGATGGCG
CCGTCGAAAGTGCCCGGCTTAAAGGGCATTCCCTCGCCCATGTCTCCCAG
AATGACATCCCCAGCAACCTCGCGTTCCACGGCGATATCGAGCATAGACT
TGGAAATATCTATGCCGATCCACATGTGCTCGCTGTCCTCAAGAACGCTA
CCTGAGAGTCCAGAACCACAGCCGATGTCCAAAATCAACCGAGACTCATC
ATCATCCGGGAGCGCCAATAGTTCCAAGGCACGTTCGGCCATTTCTACTT
GGATCTCAATGATGCGGGTGTTTGTGGAATATTTCT
BS11815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-PA | 831 | CG10903-RA | 62..831 | 786..17 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 1164 | CG10903-RB | 219..989 | 786..16 | 3855 | 100 | Minus |
CG10903-RA | 1124 | CG10903-RA | 179..949 | 786..16 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8031146..8031712 | 770..204 | 2835 | 100 | Minus |
3R | 32079331 | 3R | 8031781..8031970 | 205..16 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:15:25 has no hits.
BS11815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:34 Download gff for
BS11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-PA | 62..831 | 17..786 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:14 Download gff for
BS11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 179..949 | 16..786 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:54 Download gff for
BS11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 179..949 | 16..786 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:54 Download gff for
BS11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8031068..8031083 | 771..786 | 100 | -> | Minus |
3R | 8031146..8031711 | 205..770 | 100 | -> | Minus |
3R | 8031782..8031970 | 16..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:14 Download gff for
BS11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3856790..3856805 | 771..786 | 100 | -> | Minus |
arm_3R | 3856868..3857433 | 205..770 | 100 | -> | Minus |
arm_3R | 3857504..3857692 | 16..204 | 100 | | Minus |
BS11815.5prime Sequence
861 bp (747 high quality bases) assembled on 2006-06-16
> BS11815.5prime
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAATTTTTGAAAG
CTTTCTAAACC
BS11815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-PA | 831 | CG10903-RA | 1..831 | 17..847 | 4130 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 1164 | CG10903-RB | 158..989 | 17..848 | 4145 | 99.9 | Plus |
CG10903-RA | 1124 | CG10903-RA | 118..949 | 17..848 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8031146..8031712 | 94..660 | 2835 | 100 | Plus |
3R | 32079331 | 3R | 8031781..8031970 | 659..848 | 935 | 99.5 | Plus |
3R | 32079331 | 3R | 8030944..8030982 | 17..55 | 195 | 100 | Plus |
3R | 32079331 | 3R | 8031046..8031083 | 56..93 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:40:05 has no hits.
BS11815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:34 Download gff for
BS11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:56 Download gff for
BS11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 116..949 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:21 Download gff for
BS11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 116..949 | 14..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:21 Download gff for
BS11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8030942..8030982 | 14..55 | 97 | -> | Plus |
3R | 8031046..8031083 | 56..93 | 100 | -> | Plus |
3R | 8031146..8031711 | 94..659 | 100 | -> | Plus |
3R | 8031782..8031970 | 660..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:56 Download gff for
BS11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3856664..3856704 | 14..55 | 97 | -> | Plus |
arm_3R | 3856768..3856805 | 56..93 | 100 | -> | Plus |
arm_3R | 3856868..3857433 | 94..659 | 100 | -> | Plus |
arm_3R | 3857504..3857692 | 660..848 | 99 | | Plus |
BS11815.complete Sequence
863 bp assembled on 2006-11-01
GenBank Submission: FJ636980
> BS11815.complete
GAAGTTATCAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAG
AAATTTTCTACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGC
ATCATTGAGATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGC
GCTCCCGGATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTT
CTGGACTCTCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGC
ATAGATATTTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGC
TGGGGATGTCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGG
GCACTTTCGACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAAT
GCGGACAAGTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTAC
CACCTTGTTTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTT
ATCCGGAGAACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAG
GCGGGATTCTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGC
TAAGAAGTACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGC
AGGCTTTGGGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAA
CGTGATGCTTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGA
TTGGATCCTAGCCAAGAAAGAGCGTCGACGTCGCCAGGGGTTGGAAACCC
GTCCTGACACAAAGTACACTGCACGCAAGCGCAGCGGCAAATTTTGAAAG
CTTTCTAGACCAT
BS11815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 831 | CG10903-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
CG10903-RA | 831 | CG10903-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-RB | 1164 | CG10903-RB | 158..989 | 17..848 | 4160 | 100 | Plus |
CG10903-RA | 1124 | CG10903-RA | 118..949 | 17..848 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8031146..8031712 | 94..660 | 2835 | 100 | Plus |
3R | 32079331 | 3R | 8031781..8031970 | 659..848 | 950 | 100 | Plus |
3R | 32079331 | 3R | 8030944..8030982 | 17..55 | 195 | 100 | Plus |
3R | 32079331 | 3R | 8031046..8031083 | 56..93 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:59 has no hits.
BS11815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:25 Download gff for
BS11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:20 Download gff for
BS11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 114..947 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:46 Download gff for
BS11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 118..947 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:25 Download gff for
BS11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 114..947 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:19 Download gff for
BS11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10903-RA | 118..947 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:19 Download gff for
BS11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8030944..8030982 | 17..55 | 100 | -> | Plus |
3R | 8031046..8031083 | 56..93 | 100 | -> | Plus |
3R | 8031146..8031711 | 94..659 | 100 | -> | Plus |
3R | 8031782..8031968 | 660..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:46 Download gff for
BS11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3856666..3856704 | 17..55 | 100 | -> | Plus |
arm_3R | 3856768..3856805 | 56..93 | 100 | -> | Plus |
arm_3R | 3857504..3857690 | 660..846 | 100 | | Plus |
arm_3R | 3856868..3857433 | 94..659 | 100 | -> | Plus |
BS11815.pep Sequence
Translation from 16 to 846
> BS11815.pep
MARRPEHSAPPEIFYNDDEAKKYSTNTRIIEIQVEMAERALELLALPDDD
ESRLILDIGCGSGLSGSVLEDSEHMWIGIDISKSMLDIAVEREVAGDVIL
GDMGEGMPFKPGTFDGAISISALQWLCNADKSYHNPHKRLLKFFTTLFSC
LTRTARAVFQFYPENSDQIEMVTSQAMKAGFYGGLVVDYPNSAKAKKYYL
VLMTGGSAELPQALGSPEEERRVNYIKKRDACREARGKAPKKSRDWILAK
KERRRRQGLETRPDTKYTARKRSGKF*
BS11815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10903-PB | 276 | CG10903-PB | 1..276 | 1..276 | 1433 | 100 | Plus |
CG10903-PA | 276 | CG10903-PA | 1..276 | 1..276 | 1433 | 100 | Plus |