Clone Sequence Records
BS11819.5prime Sequence
736 bp (654 high quality bases) assembled on 2006-06-16
> BS11819.5prime
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCAT
BS11819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4289-PA | 843 | CG4289-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-RA | 1249 | CG4289-RA | 135..854 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20779676..20779983 | 429..736 | 1540 | 100 | Plus |
3L | 28110227 | 3L | 20779098..20779405 | 123..430 | 1525 | 99.7 | Plus |
3L | 28110227 | 3L | 20778933..20779047 | 17..131 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:01:53 has no hits.
BS11819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:35 Download gff for
BS11819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:06 Download gff for
BS11819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..854 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:06 Download gff for
BS11819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..854 | 17..736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:06 Download gff for
BS11819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20778933..20779043 | 17..127 | 100 | -> | Plus |
3L | 20779103..20779405 | 128..430 | 100 | -> | Plus |
3L | 20779678..20779983 | 431..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:06 Download gff for
BS11819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20772033..20772143 | 17..127 | 100 | -> | Plus |
arm_3L | 20772203..20772505 | 128..430 | 100 | -> | Plus |
arm_3L | 20772778..20773083 | 431..736 | 100 | | Plus |
BS11819.complete Sequence
875 bp assembled on 2006-11-01
GenBank Submission: FJ636981
> BS11819.complete
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCATCACCATCACCGGCA
CAGCGGGTCGGACGACAACGAGAAGGGCGATGATGCTGGATCCGGGTCTG
GCTCGTCGGAGACAGAGGTGGTCACCAAGAATAGTGACTCCAGCTTGGAG
ATCATGTAAAAGCTTTCTAGACCAT
BS11819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-RA | 843 | CG4289-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-RA | 1249 | CG4289-RA | 135..977 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20779676..20780106 | 429..859 | 2155 | 100 | Plus |
3L | 28110227 | 3L | 20779098..20779405 | 123..430 | 1525 | 99.7 | Plus |
3L | 28110227 | 3L | 20778933..20779047 | 17..131 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:40:20 has no hits.
BS11819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:27 Download gff for
BS11819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:22 Download gff for
BS11819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-RA | 139..988 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:21 Download gff for
BS11819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..975 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:28 Download gff for
BS11819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-RA | 139..988 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:23 Download gff for
BS11819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..975 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:23 Download gff for
BS11819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20778933..20779043 | 17..127 | 100 | -> | Plus |
3L | 20779103..20779405 | 128..430 | 100 | -> | Plus |
3L | 20779678..20780104 | 431..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:21 Download gff for
BS11819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20772033..20772143 | 17..127 | 100 | -> | Plus |
arm_3L | 20772203..20772505 | 128..430 | 100 | -> | Plus |
arm_3L | 20772778..20773204 | 431..857 | 100 | | Plus |
BS11819.pep Sequence
Translation from 16 to 858
> BS11819.pep
MSSNNTDTGDTTVMATATSVQNDVEAGVDEQLPRESLITTAVSFLQNTKV
RHTTLIQKQQFLRSKGLTAHEIQLACERAGVFTQDPNKPNPNPNTVISIG
SQLHALQPQPTVLGRIREIIHSAALFSGVVYAVYIFWKQYIAPYLFGKSK
KKAVDEVLDDIDKKVETRTNDLNKEILAVRDLITTQQREHAQQLNREFSN
FRSDLDAIKGLLLNRKQFAGPVAPIAVPSIPAWQLAGSPHHHHRHSGSDD
NEKGDDAGSGSGSSETEVVTKNSDSSLEIM*
BS11819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-PA | 280 | CG4289-PA | 1..280 | 1..280 | 1432 | 100 | Plus |