Clone BS11819 Report

Search the DGRC for BS11819

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptPex14-RA
Protein status:BS11819.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11819.5prime Sequence

736 bp (654 high quality bases) assembled on 2006-06-16

> BS11819.5prime
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCAT

BS11819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4289-PA 843 CG4289-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-RA 1249 CG4289-RA 135..854 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20779676..20779983 429..736 1540 100 Plus
3L 28110227 3L 20779098..20779405 123..430 1525 99.7 Plus
3L 28110227 3L 20778933..20779047 17..131 560 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 11:01:53 has no hits.

BS11819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:35 Download gff for BS11819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4289-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:06 Download gff for BS11819.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..854 17..736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:06 Download gff for BS11819.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..854 17..736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:06 Download gff for BS11819.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20778933..20779043 17..127 100 -> Plus
3L 20779103..20779405 128..430 100 -> Plus
3L 20779678..20779983 431..736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:06 Download gff for BS11819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20772033..20772143 17..127 100 -> Plus
arm_3L 20772203..20772505 128..430 100 -> Plus
arm_3L 20772778..20773083 431..736 100   Plus

BS11819.complete Sequence

875 bp assembled on 2006-11-01

GenBank Submission: FJ636981

> BS11819.complete
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCATCACCATCACCGGCA
CAGCGGGTCGGACGACAACGAGAAGGGCGATGATGCTGGATCCGGGTCTG
GCTCGTCGGAGACAGAGGTGGTCACCAAGAATAGTGACTCCAGCTTGGAG
ATCATGTAAAAGCTTTCTAGACCAT

BS11819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-RA 843 CG4289-PA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-RA 1249 CG4289-RA 135..977 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20779676..20780106 429..859 2155 100 Plus
3L 28110227 3L 20779098..20779405 123..430 1525 99.7 Plus
3L 28110227 3L 20778933..20779047 17..131 560 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 06:40:20 has no hits.

BS11819.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:27 Download gff for BS11819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:22 Download gff for BS11819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 139..988 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:21 Download gff for BS11819.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..975 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:28 Download gff for BS11819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 139..988 17..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:23 Download gff for BS11819.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..975 17..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:23 Download gff for BS11819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778933..20779043 17..127 100 -> Plus
3L 20779103..20779405 128..430 100 -> Plus
3L 20779678..20780104 431..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:21 Download gff for BS11819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20772033..20772143 17..127 100 -> Plus
arm_3L 20772203..20772505 128..430 100 -> Plus
arm_3L 20772778..20773204 431..857 100   Plus

BS11819.pep Sequence

Translation from 16 to 858

> BS11819.pep
MSSNNTDTGDTTVMATATSVQNDVEAGVDEQLPRESLITTAVSFLQNTKV
RHTTLIQKQQFLRSKGLTAHEIQLACERAGVFTQDPNKPNPNPNTVISIG
SQLHALQPQPTVLGRIREIIHSAALFSGVVYAVYIFWKQYIAPYLFGKSK
KKAVDEVLDDIDKKVETRTNDLNKEILAVRDLITTQQREHAQQLNREFSN
FRSDLDAIKGLLLNRKQFAGPVAPIAVPSIPAWQLAGSPHHHHRHSGSDD
NEKGDDAGSGSGSSETEVVTKNSDSSLEIM*

BS11819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-PA 280 CG4289-PA 1..280 1..280 1432 100 Plus