Clone Sequence Records
BS11820.3prime Sequence
696 bp (695 high quality bases) assembled on 2006-06-16
> BS11820.3prime
ATGGTCTAGAAAGCTTTTATTCATTATGTGGCCCTTTCTGAAACGGATTT
CTCCTATTTGGTCCCTTCTTTCGATAAGGATGTGCATTATCTCGCATTTT
CTGAAAGGGATGGCTACCCTTTGCTTCTTTCGCATTTGATGATTTCACAT
TTCGACGTGTATGATTCGAACGTTCTAATTCGAACTTGTCCTTTGTCAGC
TGTCTATATTTCAAGTCCTTTAGGGCAGATTTAAGTGTTGCATTCTTTTT
CGTTAAATTGAAACCCAAAGTGAGTTGCTTTCGGAAAAAGTTCCGCTCCT
TAAAAGTGAAGTTCTCAACGTCCGTGGAGAGCTGTTGTTTTCTTTCCGTG
GAGGGCTTCTCATCGTTGAAGGGCTCCCATGTAGTATCCTGCGACCGGTT
GGCTTCTATGACATTTCGACGGTGGTTCTTCTGACGCTGCTGCATGAACT
GCCTTGCGTCCTCGCTGTCCACATCCTGGTGTCCCCGGTCCGAAGAATCC
GTAATTATGTCGTTCTTCACATGCTGCCAGGGCGTCGCAGTAGCTTGTGG
AACGAGCGCTGGTTTCGGTTGGACATACTTCTTTGGCTTGAACTTGGTTT
TGCCCCAGTCCTTGGTGCGGCTCTGCAATTGACGTTCATGGCGATCATTA
TCTTCTGTTTTCTTCGGATTGGTAGAATTCATGTCGACTGATAACT
BS11820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11555-PA | 666 | CG11555-RA | 1..666 | 682..17 | 3330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11555-RB | 859 | CG11555-RB | 151..816 | 682..17 | 3330 | 100 | Minus |
| CG11555-RA | 830 | CG11555-RA | 50..715 | 682..17 | 3330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 273986..274651 | 682..17 | 3330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:38:59 has no hits.
BS11820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:35 Download gff for
BS11820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-PA | 1..666 | 17..682 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:37 Download gff for
BS11820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 43..721 | 6..690 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:26 Download gff for
BS11820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 43..721 | 6..690 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:26 Download gff for
BS11820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 273979..274657 | 6..690 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:37 Download gff for
BS11820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 273979..274657 | 6..690 | 98 | | Minus |
BS11820.5prime Sequence
696 bp (696 high quality bases) assembled on 2006-06-16
> BS11820.5prime
GAAGTTATCAGTCGACATGAATTCTACCAATCCGAAGAAAACAGAAGATA
ATGATCGCCATGAACGTCAATTGCAGAGCCGCACCAAGGACTGGGGCAAA
ACCAAGTTCAAGCCAAAGAAGTATGTCCAACCGAAACCAGCGCTCGTTCC
ACAAGCTACTGCGACGCCCTGGCAGCATGTGAAGAACGACATAATTACGG
ATTCTTCGGACCGGGGACACCAGGATGTGGACAGCGAGGACGCAAGGCAG
TTCATGCAGCAGCGTCAGAAGAACCACCGTCGAAATGTCATAGAAGCCAA
CCGGTCGCAGGATACTACATGGGAGCCCTTCAACGATGAGAAGCCCTCCA
CGGAAAGAAAACAACAGCTCTCCACGGACGTTGAGAACTTCACTTTTAAG
GAGCGGAACTTTTTCCGAAAGCAACTCACTTTGGGTTTCAATTTAACGAA
AAAGAATGCAACACTTAAATCTGCCCTAAAGGACTTGAAATATAGACAGC
TGACAAAGGACAAGTTCGAATTAGAACGTTCGAATCATACACGTCGAAAT
GTGAAATCATCAAATGCGAAAGAAGCAAAGGGTAGCCATCCCTTTCAGAA
AATGCGAGATAATGCACATCCTTATCGAAAGAAGGGACCAAATAGGAGAA
ATCCGTTTCAGAAAGGGCCACATAATGAATAAAAGCTTTCTAGACC
BS11820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11555-PA | 666 | CG11555-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11555-RB | 859 | CG11555-RB | 151..816 | 17..682 | 3330 | 100 | Plus |
| CG11555-RA | 830 | CG11555-RA | 50..715 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 273986..274651 | 17..682 | 3330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:31:15 has no hits.
BS11820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:36 Download gff for
BS11820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:27 Download gff for
BS11820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 43..721 | 9..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:08 Download gff for
BS11820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 43..721 | 9..693 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:08 Download gff for
BS11820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 273979..274657 | 9..693 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:27 Download gff for
BS11820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 273979..274657 | 9..693 | 98 | | Plus |
BS11820.complete Sequence
698 bp assembled on 2006-11-01
GenBank Submission: FJ636982
> BS11820.complete
GAAGTTATCAGTCGACATGAATTCTACCAATCCGAAGAAAACAGAAGATA
ATGATCGCCATGAACGTCAATTGCAGAGCCGCACCAAGGACTGGGGCAAA
ACCAAGTTCAAGCCAAAGAAGTATGTCCAACCGAAACCAGCGCTCGTTCC
ACAAGCTACTGCGACGCCCTGGCAGCATGTGAAGAACGACATAATTACGG
ATTCTTCGGACCGGGGACACCAGGATGTGGACAGCGAGGACGCAAGGCAG
TTCATGCAGCAGCGTCAGAAGAACCACCGTCGAAATGTCATAGAAGCCAA
CCGGTCGCAGGATACTACATGGGAGCCCTTCAACGATGAGAAGCCCTCCA
CGGAAAGAAAACAACAGCTCTCCACGGACGTTGAGAACTTCACTTTTAAG
GAGCGGAACTTTTTCCGAAAGCAACTCACTTTGGGTTTCAATTTAACGAA
AAAGAATGCAACACTTAAATCTGCCCTAAAGGACTTGAAATATAGACAGC
TGACAAAGGACAAGTTCGAATTAGAACGTTCGAATCATACACGTCGAAAT
GTGAAATCATCAAATGCGAAAGAAGCAAAGGGTAGCCATCCCTTTCAGAA
AATGCGAGATAATGCACATCCTTATCGAAAGAAGGGACCAAATAGGAGAA
ATCCGTTTCAGAAAGGGCCACATAATGAATAAAAGCTTTCTAGACCAT
BS11820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11555-RB | 666 | CG11555-PB | 1..666 | 17..682 | 3330 | 100 | Plus |
| CG11555-RA | 666 | CG11555-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11555-RB | 859 | CG11555-RB | 151..816 | 17..682 | 3330 | 100 | Plus |
| CG11555-RA | 830 | CG11555-RA | 50..715 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 273986..274651 | 17..682 | 3330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:00:08 has no hits.
BS11820.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:30 Download gff for
BS11820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:24 Download gff for
BS11820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 25..703 | 9..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:23 Download gff for
BS11820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 50..713 | 17..680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:30 Download gff for
BS11820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 25..703 | 9..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:09 Download gff for
BS11820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11555-RA | 50..713 | 17..680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:09 Download gff for
BS11820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 273986..274649 | 17..680 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:23 Download gff for
BS11820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 273986..274649 | 17..680 | 100 | | Plus |
BS11820.pep Sequence
Translation from 16 to 681
> BS11820.pep
MNSTNPKKTEDNDRHERQLQSRTKDWGKTKFKPKKYVQPKPALVPQATAT
PWQHVKNDIITDSSDRGHQDVDSEDARQFMQQRQKNHRRNVIEANRSQDT
TWEPFNDEKPSTERKQQLSTDVENFTFKERNFFRKQLTLGFNLTKKNATL
KSALKDLKYRQLTKDKFELERSNHTRRNVKSSNAKEAKGSHPFQKMRDNA
HPYRKKGPNRRNPFQKGPHNE*
BS11820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11555-PB | 221 | CG11555-PB | 1..221 | 1..221 | 1186 | 100 | Plus |
| CG11555-PA | 221 | CG11555-PA | 1..221 | 1..221 | 1186 | 100 | Plus |
