BS11821.complete Sequence
1979 bp assembled on 2009-12-07
GenBank Submission: KX802168
> BS11821.complete
GAAGTTATCAGTCGACATGCCCAACACATACAGTGCTTTGCCCCATAATC
GGAGCTCAGGTGAGAGCCAGCAACAGTGGACATCCTCCAGTAGAAATCGC
ACCTGCCATCCAGTGAGCATGGCCAGATCAACGAGTGGCCACTTGATTTT
CCTCCTCTTGATCTGCCTAATAAACTCGGCCGCCAAAGCGGATGGAACGG
CTCGGAATGGTCGTCTTGGCCGTCATCTCTCTACCACTCCTTTAAGCCAT
CCGACCGTGGAATCGCAGCCAACCGAGGAGCAAGAAATGTTTACCGAGTC
ACCAACGGAATCCCCAGAGGATGTCGAGCTTGCGACGACGACGGAACTAC
CGCCGGAAGAAGACTGGCAGCCTCTGATAAATGCCACCAAGTTTCCCACG
AGGAAGCCGATGGACAAAATGGCTCCCAGTGATTCCCTGCTCCTTAGACT
GGCCCGGCGATTCGCCAGTGGAAACGAGCTGTGGGACGGCCTTGTCCGCG
ATTGCTATCTAAAGCCAGATGTATCTTGCTTCCAAAAGAACGTCTTCAGC
TACCTGGATAACGTTCTGGATGTGCAGGACGTGAATGTGACCCAAAGGCT
CAAGTTCTTCAAGAATCAAGTGGACTACCAAGTGGACAAGGAGAAGGAGG
AGCACTCGGAGGCACGTGCCGCCAGTGCGGAAACCCCGATCGAGGAAGTG
ACCAGCGCTCTATATGGCAAGAGCATCAAGTTTGCCATGACCCACGATCT
AGAGGTGGACCTGCCTGAGGTTATGTTCAATGGCGCCACCTTTCGCATCT
CGCCGCGAGCCATTGAAGGCAATGGAATCATCGCCAAGCTGGAGCTGATT
CCCAAACAGGTAGTCAAAGCCCGACTGGCCGGGGCGATAATCCAGAAGAA
GATACAAAAATTTCTACGCAGCAAACTGGTGCTGTCATTCCTCGCATTGC
TGCTGATCATTAAAATCATCAAGATCAAGTTGTTCTGGCTCCTGCCAATC
GTCATCGGAGTTGGTGCGGCCAAGAAGCTGCTGCTAAAGTTCCTGCTCTT
CCTGTTCCCAGCGCTGTCGCATCTCTTCAAGCTCTGCTCGCACTACCAGC
AATCCTATCACGCACCCGCCAAGTACCACCACCACCATCACCTTATCGAT
CATCATCACACGGTTGTTCCGCCATGGCACAGTGGTGAGCACCACTCGGT
TCCGGAAATCATTTATACCCACCCGCCGAAGGGCCATCCGTCCGCCTATC
TCCATGGCGCTCCGGTGCACGAGAGCTATGGACCCGGATTCGAGCACTTC
GAGGGCGCCTGGGAGAACAGCGGTCCTGGCTTGGGATCCGACTCAAGGCC
GGCACACACGCAGCACCATCCGGTGTACGTCCCGGGACAGGGACACCATC
CGCCGCAAAATGTTCCCGGACTCACGGCAGCCGCACAAATTGCCGCGCAG
TACGATCCATCCCGCAACAATCAGCATCCGCAGCAGCCGCCGCAGCAGCC
AAATCACGCTGTTCAGGAGCCACAACTTTCGCCTGAAATAGCAGCCCAGC
TGAAGGAGGCTATCCGCATTCAGACCGAGCAGCGGCTCATCCAGCAGCAG
CAGAAGATACTGGAGCACCAGCCATTCGTGCAGGATGGACAGCCGCTGTA
TCCGCTCAACTACGATCCGTTCTACAGTCCCATTCTGCTGAAAATCGACA
AAATCATCGAGCAGCTCGGAGTAAAAAACGACCTCTGCAAGGAGCGAATT
GTGTGCAGCATGTACAAGGATCCGGCCACCTACAGTCCGCACAGCAATTT
CATTTCCGCGGAGCTCAGTCGCGATACCAGCGAACTGGAGCCCGTAACGC
ATGCGAATGAGGCAGTGCGTCGCTTCTACCGGCTAATTCAGGCTGCCCGG
GATGGCCAGGATCAAAAGGACTGCCAGAGCCTGTACCCACAGTGCAATAT
GCCGGCCAAGTGAAAGCTTTCTAGACCAT
BS11821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi17-RB | 1947 | CG15598-PB | 1..1947 | 17..1963 | 9735 | 100 | Plus |
| Osi17-RA | 1947 | CG15598-PA | 1..1947 | 17..1963 | 9735 | 100 | Plus |
| Osi17-RD | 2253 | CG15598-PD | 1..1325 | 17..1341 | 6625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi17-RB | 3762 | CG15598-RB | 1305..3251 | 17..1963 | 9735 | 100 | Plus |
| Osi17-RA | 3049 | CG15598-RA | 592..2538 | 17..1963 | 9735 | 100 | Plus |
| Osi17-RD | 4068 | CG15598-RD | 1305..2629 | 17..1341 | 6625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6315887..6316541 | 17..671 | 3275 | 100 | Plus |
| 3R | 32079331 | 3R | 6318164..6318422 | 906..1164 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 6317773..6318007 | 671..905 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 6321810..6321999 | 1342..1531 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 6323991..6324172 | 1640..1821 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 6320527..6320706 | 1162..1341 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 6326655..6326797 | 1821..1963 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 6323806..6323917 | 1531..1642 | 560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6875 | 1467..1622 | 157 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6874 | 1469..1669 | 132 | 54.5 | Plus |
BS11821.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:35 Download gff for
BS11821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RA | 590..2535 | 17..1962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:22 Download gff for
BS11821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RA | 592..2537 | 17..1962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:34 Download gff for
BS11821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RA | 590..2535 | 17..1962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:30 Download gff for
BS11821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RA | 592..2537 | 17..1962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:30 Download gff for
BS11821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6323807..6323917 | 1532..1642 | 100 | -> | Plus |
| 3R | 6323994..6324172 | 1643..1821 | 100 | -> | Plus |
| 3R | 6326656..6326796 | 1822..1962 | 100 | | Plus |
| 3R | 6315887..6316541 | 17..671 | 100 | -> | Plus |
| 3R | 6317774..6318007 | 672..905 | 100 | -> | Plus |
| 3R | 6318164..6318420 | 906..1162 | 100 | -> | Plus |
| 3R | 6320528..6320706 | 1163..1341 | 100 | -> | Plus |
| 3R | 6321810..6321999 | 1342..1531 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:22 Download gff for
BS11821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2149529..2149639 | 1532..1642 | 100 | -> | Plus |
| arm_3R | 2149716..2149894 | 1643..1821 | 100 | -> | Plus |
| arm_3R | 2152378..2152518 | 1822..1962 | 100 | | Plus |
| arm_3R | 2141609..2142263 | 17..671 | 100 | -> | Plus |
| arm_3R | 2143496..2143729 | 672..905 | 100 | -> | Plus |
| arm_3R | 2143886..2144142 | 906..1162 | 100 | -> | Plus |
| arm_3R | 2146250..2146428 | 1163..1341 | 100 | -> | Plus |
| arm_3R | 2147532..2147721 | 1342..1531 | 100 | -> | Plus |
BS11821.pep Sequence
Translation from 16 to 1962
> BS11821.pep
MPNTYSALPHNRSSGESQQQWTSSSRNRTCHPVSMARSTSGHLIFLLLIC
LINSAAKADGTARNGRLGRHLSTTPLSHPTVESQPTEEQEMFTESPTESP
EDVELATTTELPPEEDWQPLINATKFPTRKPMDKMAPSDSLLLRLARRFA
SGNELWDGLVRDCYLKPDVSCFQKNVFSYLDNVLDVQDVNVTQRLKFFKN
QVDYQVDKEKEEHSEARAASAETPIEEVTSALYGKSIKFAMTHDLEVDLP
EVMFNGATFRISPRAIEGNGIIAKLELIPKQVVKARLAGAIIQKKIQKFL
RSKLVLSFLALLLIIKIIKIKLFWLLPIVIGVGAAKKLLLKFLLFLFPAL
SHLFKLCSHYQQSYHAPAKYHHHHHLIDHHHTVVPPWHSGEHHSVPEIIY
THPPKGHPSAYLHGAPVHESYGPGFEHFEGAWENSGPGLGSDSRPAHTQH
HPVYVPGQGHHPPQNVPGLTAAAQIAAQYDPSRNNQHPQQPPQQPNHAVQ
EPQLSPEIAAQLKEAIRIQTEQRLIQQQQKILEHQPFVQDGQPLYPLNYD
PFYSPILLKIDKIIEQLGVKNDLCKERIVCSMYKDPATYSPHSNFISAEL
SRDTSELEPVTHANEAVRRFYRLIQAARDGQDQKDCQSLYPQCNMPAK*
BS11821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi17-PB | 648 | CG15598-PB | 1..648 | 1..648 | 3439 | 100 | Plus |
| Osi17-PA | 648 | CG15598-PA | 1..648 | 1..648 | 3439 | 100 | Plus |
| Osi17-PD | 750 | CG15598-PD | 1..564 | 1..546 | 2340 | 81.9 | Plus |
| Osi17-PC | 750 | CG15598-PC | 1..564 | 1..546 | 2340 | 81.9 | Plus |
| Osi17-PD | 750 | CG15598-PD | 545..750 | 443..648 | 1104 | 100 | Plus |
| Osi17-PC | 750 | CG15598-PC | 545..750 | 443..648 | 1104 | 100 | Plus |
| Osi24-PA | 533 | CG15589-PA | 408..505 | 548..643 | 259 | 44.9 | Plus |
