Clone Sequence Records
BS11822.3prime Sequence
760 bp (715 high quality bases) assembled on 2006-06-16
> BS11822.3prime
ATGGTCTAGAAAGCTTTCACAGCTTGGCGAACACTGGCTTATCGTCCTTC
GTCAACTGGGCGGCCACAGCCTGGGCGAAGTCCTCCGACAGCAGGTTGAG
CTTGTTCAGCAGGAGAATGTGATCCAAGCCCTCTTGATTGGTGTGCTCCA
GGGAGTACACGAGGCTCTCCTTGGTTGTCTTTACGGCGACGGGACTCTTG
CTAGCGATGAGCTCGGCCACGGCCAGGGCTCCGGTCAGCAGGGAATCCTT
GTCTGGGAAGAGGCGACTCACCAGGCCCGAGGAGTGGGCCTCGGCGGCCT
CGAATTTGCGCCCAGTGAAGCACAGCTCGCGGGCGAGGGACTGACTGCCC
ACTGCCTTGGGCAGACGCTGCAGGGTGCCCACGTCGGCGGCCATGCCGAT
GTCCACCTCCTTGACCTGGAAAAAGGCGTCCTCGGTGCAGTAGCGAATGT
CGGCGGCGGTAATCAGGTCCACGCCGGCGCCGATGCACGCCTTGTGCACC
GCCGTGATGACCGGCTTGGGGCAGTGCTCCAGGCTGCTGATTGAGTCCTG
GTACACCTTGATCATTCGCTCCATGGAGACGCCCTTGCGGGCGTAGTCAT
CGGTCTCGGCCAGCGTTTGGCCCACGTTTATCATGTCGTTGAGGTCGATG
CCGGCGGTGAAGTGCTTTCCGGAGGCGGACAAAACGATAGCCCGGCAGTC
GGGATTAGTGGCCAGTCCGTCGAAGCACTCCTTGATCTCCAGCCACATCT
GCTTGCTTAT
BS11822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-PA | 939 | CG9577-RA | 196..939 | 760..17 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-RA | 1131 | CG9577-RA | 288..1031 | 760..17 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20167191..20167815 | 740..116 | 3125 | 100 | Minus |
X | 23542271 | X | 20167882..20167980 | 115..17 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:50:57 has no hits.
BS11822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:36 Download gff for
BS11822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-PA | 196..939 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:07 Download gff for
BS11822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 288..1031 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:14 Download gff for
BS11822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 288..1031 | 17..760 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:14 Download gff for
BS11822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20167100..20167119 | 741..760 | 100 | -> | Minus |
X | 20167191..20167815 | 116..740 | 100 | -> | Minus |
X | 20167882..20167980 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:07 Download gff for
BS11822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20061133..20061152 | 741..760 | 100 | -> | Minus |
arm_X | 20061224..20061848 | 116..740 | 100 | -> | Minus |
arm_X | 20061915..20062013 | 17..115 | 100 | | Minus |
BS11822.complete Sequence
971 bp assembled on 2006-11-01
GenBank Submission: FJ636983
> BS11822.complete
GAAGTTATCAGTCGACATGTCGCTCTCCCGCCTGAACACTCTGATGAAAC
TAACGCCCAAGCCCACGGCCATCGGATCCCTTAAGATGCAGAGAAACCTT
TCCGCCCTCCCGGAATCCGGACCCACCGGCTCTTTCAAGACGCTGGCCGT
CAGTTCGCCCAAGCCGTTCGTCTTTCATGTGGAGCTCCATCGGCCCAGCA
AGTTCAACGCCATAAGCAAGCAGATGTGGCTGGAGATCAAGGAGTGCTTC
GACGGACTGGCCACTAATCCCGACTGCCGGGCTATCGTTTTGTCCGCCTC
CGGAAAGCACTTCACCGCCGGCATCGACCTCAACGACATGATAAACGTGG
GCCAAACGCTGGCCGAGACCGATGACTACGCCCGCAAGGGCGTCTCCATG
GAGCGAATGATCAAGGTGTACCAGGACTCAATCAGCAGCCTGGAGCACTG
CCCCAAGCCGGTCATCACGGCGGTGCACAAGGCGTGCATCGGCGCCGGCG
TGGACCTGATTACCGCCGCCGACATTCGCTACTGCACCGAGGACGCCTTT
TTCCAGGTCAAGGAGGTGGACATCGGCATGGCCGCCGACGTGGGCACCCT
GCAGCGTCTGCCCAAGGCAGTGGGCAGTCAGTCCCTCGCCCGCGAGCTGT
GCTTCACTGGGCGCAAATTCGAGGCCGCCGAGGCCCACTCCTCGGGCCTG
GTGAGTCGCCTCTTCCCAGACAAGGATTCCCTGCTGACCGGAGCCCTGGC
CGTGGCCGAGCTCATCGCTAGCAAGAGTCCCGTCGCCGTAAAGACAACCA
AGGAGAGCCTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGAT
CACATTCTCCTGCTGAACAAGCTCAACCTGCTGTCGGAGGACTTCGCCCA
GGCTGTGGCCGCCCAGTTGACGAAGGACGATAAGCCAGTGTTCGCCAAGC
TGTGAAAGCTTTCTAGACCAT
BS11822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-RA | 939 | CG9577-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-RA | 1131 | CG9577-RA | 93..1031 | 17..955 | 4695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20167191..20167815 | 232..856 | 3125 | 100 | Plus |
X | 23542271 | X | 20166956..20167120 | 68..232 | 825 | 100 | Plus |
X | 23542271 | X | 20167882..20167980 | 857..955 | 495 | 100 | Plus |
X | 23542271 | X | 20166765..20166816 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:20 has no hits.
BS11822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:31 Download gff for
BS11822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:25 Download gff for
BS11822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 84..1029 | 11..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:27 Download gff for
BS11822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 93..1030 | 17..954 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:32 Download gff for
BS11822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 84..1029 | 11..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:29 Download gff for
BS11822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 93..1030 | 17..954 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:29 Download gff for
BS11822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20166765..20166816 | 17..68 | 100 | -> | Plus |
X | 20166957..20167119 | 69..231 | 100 | -> | Plus |
X | 20167191..20167815 | 232..856 | 100 | -> | Plus |
X | 20167882..20167979 | 857..954 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:27 Download gff for
BS11822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20060798..20060849 | 17..68 | 100 | -> | Plus |
arm_X | 20060990..20061152 | 69..231 | 100 | -> | Plus |
arm_X | 20061224..20061848 | 232..856 | 100 | -> | Plus |
arm_X | 20061915..20062012 | 857..954 | 100 | | Plus |
BS11822.pep Sequence
Translation from 16 to 954
> BS11822.pep
MSLSRLNTLMKLTPKPTAIGSLKMQRNLSALPESGPTGSFKTLAVSSPKP
FVFHVELHRPSKFNAISKQMWLEIKECFDGLATNPDCRAIVLSASGKHFT
AGIDLNDMINVGQTLAETDDYARKGVSMERMIKVYQDSISSLEHCPKPVI
TAVHKACIGAGVDLITAADIRYCTEDAFFQVKEVDIGMAADVGTLQRLPK
AVGSQSLARELCFTGRKFEAAEAHSSGLVSRLFPDKDSLLTGALAVAELI
ASKSPVAVKTTKESLVYSLEHTNQEGLDHILLLNKLNLLSEDFAQAVAAQ
LTKDDKPVFAKL*
BS11822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-PA | 312 | CG9577-PA | 1..312 | 1..312 | 1574 | 100 | Plus |
CG6543-PA | 295 | CG6543-PA | 55..261 | 55..277 | 240 | 31.4 | Plus |
CG6543-PB | 295 | CG6543-PB | 55..261 | 55..277 | 240 | 31.4 | Plus |
CG8778-PA | 299 | CG8778-PA | 3..250 | 1..262 | 222 | 28.3 | Plus |
CG13890-PA | 262 | CG13890-PA | 21..187 | 56..233 | 152 | 24.2 | Plus |