Clone BS11822 Report

Search the DGRC for BS11822

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG9577-RA
Protein status:BS11822.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11822.3prime Sequence

760 bp (715 high quality bases) assembled on 2006-06-16

> BS11822.3prime
ATGGTCTAGAAAGCTTTCACAGCTTGGCGAACACTGGCTTATCGTCCTTC
GTCAACTGGGCGGCCACAGCCTGGGCGAAGTCCTCCGACAGCAGGTTGAG
CTTGTTCAGCAGGAGAATGTGATCCAAGCCCTCTTGATTGGTGTGCTCCA
GGGAGTACACGAGGCTCTCCTTGGTTGTCTTTACGGCGACGGGACTCTTG
CTAGCGATGAGCTCGGCCACGGCCAGGGCTCCGGTCAGCAGGGAATCCTT
GTCTGGGAAGAGGCGACTCACCAGGCCCGAGGAGTGGGCCTCGGCGGCCT
CGAATTTGCGCCCAGTGAAGCACAGCTCGCGGGCGAGGGACTGACTGCCC
ACTGCCTTGGGCAGACGCTGCAGGGTGCCCACGTCGGCGGCCATGCCGAT
GTCCACCTCCTTGACCTGGAAAAAGGCGTCCTCGGTGCAGTAGCGAATGT
CGGCGGCGGTAATCAGGTCCACGCCGGCGCCGATGCACGCCTTGTGCACC
GCCGTGATGACCGGCTTGGGGCAGTGCTCCAGGCTGCTGATTGAGTCCTG
GTACACCTTGATCATTCGCTCCATGGAGACGCCCTTGCGGGCGTAGTCAT
CGGTCTCGGCCAGCGTTTGGCCCACGTTTATCATGTCGTTGAGGTCGATG
CCGGCGGTGAAGTGCTTTCCGGAGGCGGACAAAACGATAGCCCGGCAGTC
GGGATTAGTGGCCAGTCCGTCGAAGCACTCCTTGATCTCCAGCCACATCT
GCTTGCTTAT

BS11822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-PA 939 CG9577-RA 196..939 760..17 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-RA 1131 CG9577-RA 288..1031 760..17 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20167191..20167815 740..116 3125 100 Minus
X 23542271 X 20167882..20167980 115..17 495 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:50:57 has no hits.

BS11822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:36 Download gff for BS11822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-PA 196..939 17..760 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:07 Download gff for BS11822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 288..1031 17..760 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:14 Download gff for BS11822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 288..1031 17..760 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:14 Download gff for BS11822.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20167100..20167119 741..760 100 -> Minus
X 20167191..20167815 116..740 100 -> Minus
X 20167882..20167980 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:07 Download gff for BS11822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20061133..20061152 741..760 100 -> Minus
arm_X 20061224..20061848 116..740 100 -> Minus
arm_X 20061915..20062013 17..115 100   Minus

BS11822.complete Sequence

971 bp assembled on 2006-11-01

GenBank Submission: FJ636983

> BS11822.complete
GAAGTTATCAGTCGACATGTCGCTCTCCCGCCTGAACACTCTGATGAAAC
TAACGCCCAAGCCCACGGCCATCGGATCCCTTAAGATGCAGAGAAACCTT
TCCGCCCTCCCGGAATCCGGACCCACCGGCTCTTTCAAGACGCTGGCCGT
CAGTTCGCCCAAGCCGTTCGTCTTTCATGTGGAGCTCCATCGGCCCAGCA
AGTTCAACGCCATAAGCAAGCAGATGTGGCTGGAGATCAAGGAGTGCTTC
GACGGACTGGCCACTAATCCCGACTGCCGGGCTATCGTTTTGTCCGCCTC
CGGAAAGCACTTCACCGCCGGCATCGACCTCAACGACATGATAAACGTGG
GCCAAACGCTGGCCGAGACCGATGACTACGCCCGCAAGGGCGTCTCCATG
GAGCGAATGATCAAGGTGTACCAGGACTCAATCAGCAGCCTGGAGCACTG
CCCCAAGCCGGTCATCACGGCGGTGCACAAGGCGTGCATCGGCGCCGGCG
TGGACCTGATTACCGCCGCCGACATTCGCTACTGCACCGAGGACGCCTTT
TTCCAGGTCAAGGAGGTGGACATCGGCATGGCCGCCGACGTGGGCACCCT
GCAGCGTCTGCCCAAGGCAGTGGGCAGTCAGTCCCTCGCCCGCGAGCTGT
GCTTCACTGGGCGCAAATTCGAGGCCGCCGAGGCCCACTCCTCGGGCCTG
GTGAGTCGCCTCTTCCCAGACAAGGATTCCCTGCTGACCGGAGCCCTGGC
CGTGGCCGAGCTCATCGCTAGCAAGAGTCCCGTCGCCGTAAAGACAACCA
AGGAGAGCCTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGAT
CACATTCTCCTGCTGAACAAGCTCAACCTGCTGTCGGAGGACTTCGCCCA
GGCTGTGGCCGCCCAGTTGACGAAGGACGATAAGCCAGTGTTCGCCAAGC
TGTGAAAGCTTTCTAGACCAT

BS11822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-RA 939 CG9577-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-RA 1131 CG9577-RA 93..1031 17..955 4695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20167191..20167815 232..856 3125 100 Plus
X 23542271 X 20166956..20167120 68..232 825 100 Plus
X 23542271 X 20167882..20167980 857..955 495 100 Plus
X 23542271 X 20166765..20166816 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:49:20 has no hits.

BS11822.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:31 Download gff for BS11822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 1..939 17..955 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:25 Download gff for BS11822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 84..1029 11..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:27 Download gff for BS11822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 93..1030 17..954 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:32 Download gff for BS11822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 84..1029 11..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:29 Download gff for BS11822.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 93..1030 17..954 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:29 Download gff for BS11822.complete
Subject Subject Range Query Range Percent Splice Strand
X 20166765..20166816 17..68 100 -> Plus
X 20166957..20167119 69..231 100 -> Plus
X 20167191..20167815 232..856 100 -> Plus
X 20167882..20167979 857..954 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:27 Download gff for BS11822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20060798..20060849 17..68 100 -> Plus
arm_X 20060990..20061152 69..231 100 -> Plus
arm_X 20061224..20061848 232..856 100 -> Plus
arm_X 20061915..20062012 857..954 100   Plus

BS11822.pep Sequence

Translation from 16 to 954

> BS11822.pep
MSLSRLNTLMKLTPKPTAIGSLKMQRNLSALPESGPTGSFKTLAVSSPKP
FVFHVELHRPSKFNAISKQMWLEIKECFDGLATNPDCRAIVLSASGKHFT
AGIDLNDMINVGQTLAETDDYARKGVSMERMIKVYQDSISSLEHCPKPVI
TAVHKACIGAGVDLITAADIRYCTEDAFFQVKEVDIGMAADVGTLQRLPK
AVGSQSLARELCFTGRKFEAAEAHSSGLVSRLFPDKDSLLTGALAVAELI
ASKSPVAVKTTKESLVYSLEHTNQEGLDHILLLNKLNLLSEDFAQAVAAQ
LTKDDKPVFAKL*

BS11822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-PA 312 CG9577-PA 1..312 1..312 1574 100 Plus
CG6543-PA 295 CG6543-PA 55..261 55..277 240 31.4 Plus
CG6543-PB 295 CG6543-PB 55..261 55..277 240 31.4 Plus
CG8778-PA 299 CG8778-PA 3..250 1..262 222 28.3 Plus
CG13890-PA 262 CG13890-PA 21..187 56..233 152 24.2 Plus