BS11823.complete Sequence
2753 bp assembled on 2009-12-07
GenBank Submission: KX803609
> BS11823.complete
GAAGTTATCAGTCGACATGCATGGAATAACACACCTGTACCGCCAGCATG
CCGTGGAAAAACAGCTGAGCGGTGGCGAGAGCTGGTCCCGCCAAATTTAC
CCGAGCTACGGCAGCAGTGCCGATGCCTCCTCGCAGGGCAGTCGCCTCTA
CAGCGTGGACTCCTCCAGCAGCTCCAGCTCCAATTCCAATAATTCCGGAG
GTGGAGGCAGTGGAACTGCAGGGGTTGAGAATTTGGGAGGAGTCACCGGC
AGCGCCTACGCCCAGTGGCAGAGCGACCGACACTCTCTGCCACAGGCTGT
GCCCGATGCCCCTCGGTCGCTGGCTAACCACCACTACCGCAACTCGCCCA
CCCACCAAGCCCACTACCAGCAGCCCACTAGCGGCAGTCTCAAGCGGACA
CCCTCCTCGAAGCGCAGCTTCCTGGAACGATCTCACAGTCCGGCTATATA
TGGTAGCATGCGTCGCAGTGCAGGTCCGGACTTCGGCTCTCCCCCGCCCA
CCGCACCCGTCGGTGGAGGCGGCTACTTCCCACACGATCTCGACGACATC
TACGAGAGCCAGACGGACCATCAGTATTTCACCCACACGGGTGCTAGCGG
ACCACAGCAGCAGCGACCCACGGCTATCTCGATCTTTCATCGAGTGAGTG
CTGCCCACACCTCGCTGGACGACTATACCTTGCCCGGGGATGCATCGCGC
CAGTCCATGAATAGTACAGACAGCGGGGTGAGCAGCGGTCCCTTCAATCG
CCAGCGTTTCGACAACTCGTCATTCGCCAAGAGTCTCAGCATCGACGAAC
AGGACCCACAGCACTCGCCCCATAAGGAAGGTCACAGCAAGCACGGAAAG
CACCATCACCATCATAGCCATCACCACCATTCGATCCACGAGCTAGTGAA
GCATTTTGGCAAAAAGATGCACCTGTGGCCGAGGAAGCACCACGACGCCC
AGAGCGTTTGCACCTCGCCACAGAACGATCCGCAGGAGAACTTCCGCACC
AGATCCAAGAGCTTGGATGTGAACACGCTCAGTCGCCCCAACCGCATTCT
CGATGACTGCGGGGCCACCTACAAGATATACGATCGCATAGTCAAAGAAG
GTGCTCACATGCGTCGTGCCTCCGCGGATTTGGAGAAACGTCGTGCATCA
GTTGGTGCCGCAGGTCGAGGACTGCGAGGGGATGGTACTTTGGATCCACA
CCATGCAGCCATCCTCTTCAGAGACTCACGAGGGTTGCCTGTCGCTGATC
CGTTCCTAGAGAAAGTAAATCTATCAGATCTGGAAGAGGACGACTCACAG
ATCTTCGTGAAGTTCTTTCGTTTTCACAAGTGCTATGATCTGATACCCAC
CTCCGCCAAGTTGGTTGTCTTCGACACCCAGCTTCTTGTAAAGAAGGCCT
TCTACGCCCTCGTCTACAACGGTGTGCGAGCGGCACCGCTCTGGGATTCG
GAGAAGCAACAGTTCGTGGGCATGCTAACCATCACGGACTTTATCAAGAT
CCTGCAAATGTATTACAAATCGCCAAATGCGTCCATGGAGCAGCTGGAAG
AGCACAAACTGGACACGTGGCGGAGCGTGCTGCACAACCAGGTGATGCCG
TTGGTCAGCATCGGACCGGATGCGTCCCTCTACGATGCCATCAAAATTCT
CATCCACAGCCGCATACATCGCCTGCCCGTCATCGATCCGGCGACCGGCA
ATGTCCTCTACATCCTGACACATAAACGCATACTTAGGTTCCTTTTCCTA
TACATTAATGAATTACCAAAGCCCGCGTACATGCAAAAAAGTTTGCGCGA
ACTGAAGATTGGCACCTATAACAACATCGAGACCGCCGACGAGACGACGA
GCATCATCACGGCGCTCAAGAAATTTGTGGAGCGACGAGTCTCAGCCCTG
CCACTAGTGGATTCCGATGGTCGCCTCGTTGACATTTACGCAAAGTTTGA
TGTGATTAATCTCGCCGCCGAGAAAACCTACAACGATCTCGATGTTTCGC
TGCGCAAAGCCAACGAGCACCGGAACGAGTGGTTCGAGGGCGTGCAGAAG
TGCAATCTGGACGAATCGCTCTACACGATCATGGAACGAATCGTCCGCGC
CGAAGTACATCGACTGGTGGTGGTCGACGAGAATCGCAAAGTGATCGGCA
TTATCTCGCTGTCCGATATACTGCTCTACCTCGTCCTGCGACCAAGCGGT
GAAGGCGTCGGTGGCTCGGAGAGCTCATTGCGTGCGTCCGATCCCGTTCT
GCTGCGCAAAGTGGCTGAGGTTGAAATACCAGCGACAGCCGCAGCGGCGA
CGACAACAACCCCGCCTCGCAGTCCATCGGCCGGATCCGGCAATCGCAGC
CTGATCGAGGACATACCCGAAGAGGAGACGGCGCCGGCGAGGAGCGACGA
TGCCGACAGTGATAACAATAAGTCCGCCAGTGAGGATAAAGCCAACAATA
ACCAGCACGACCAGACGACGACGGCTGCGACAGCTAATGGTGATAGCAAC
AACAGCCCCGTAGAAGTGTCCTTTGCCGATGAGGCGCAGGAAGAAGAAGC
TGCCGACCAGGTCGAGCGCAGCAATTGTGATGATGATGACCAGCCAGCGT
TAGCGGAGATTGAGCGCAAGAATGCATCGATGGACGACGACGAGGACGAT
GGGATGAGCAGCGCCGTGTCCGCTGCCTCCGCTTTGGGCCAGTCACTGAC
GCCCGCGGCGCAAGAAATGGCGTTGGTTAGTGAATAAAAGCTTTCTAGAC
CAT
BS11823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RE | 2721 | CG17299-PE | 1..2721 | 17..2737 | 13605 | 100 | Plus |
| SNF4Agamma-RC | 2721 | CG17299-PC | 1..2721 | 17..2737 | 13605 | 100 | Plus |
| SNF4Agamma-RJ | 2721 | CG17299-PJ | 1..2721 | 17..2737 | 13605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RE | 3308 | CG17299-RE | 428..3149 | 17..2738 | 13610 | 100 | Plus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 317..3038 | 17..2738 | 13610 | 100 | Plus |
| SNF4Agamma-RJ | 3675 | CG17299-RJ | 795..3516 | 17..2738 | 13610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21211748..21212528 | 1958..2738 | 3905 | 100 | Plus |
| 3R | 32079331 | 3R | 21201685..21202332 | 455..1102 | 3240 | 100 | Plus |
| 3R | 32079331 | 3R | 21200971..21201408 | 17..454 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21211080 | 1283..1575 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 21211387..21211590 | 1754..1957 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 21211141..21211319 | 1575..1753 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 21202450..21202585 | 1099..1234 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 21207618..21207667 | 1234..1283 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:22:24 has no hits.
BS11823.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:00 Download gff for
BS11823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RC | 315..3033 | 17..2735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:41 Download gff for
BS11823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RJ | 795..3513 | 17..2735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:56 Download gff for
BS11823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RC | 315..3033 | 17..2735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:04 Download gff for
BS11823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RJ | 795..3513 | 17..2735 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:04 Download gff for
BS11823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21200971..21201408 | 17..454 | 100 | -> | Plus |
| 3R | 21201685..21202330 | 455..1100 | 100 | -> | Plus |
| 3R | 21202452..21202585 | 1101..1234 | 100 | -> | Plus |
| 3R | 21207619..21207667 | 1235..1283 | 100 | -> | Plus |
| 3R | 21210789..21211079 | 1284..1574 | 100 | -> | Plus |
| 3R | 21211141..21211319 | 1575..1753 | 100 | -> | Plus |
| 3R | 21211387..21211590 | 1754..1957 | 100 | -> | Plus |
| 3R | 21211748..21212525 | 1958..2735 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:41 Download gff for
BS11823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17026693..17027130 | 17..454 | 100 | -> | Plus |
| arm_3R | 17027407..17028052 | 455..1100 | 100 | -> | Plus |
| arm_3R | 17028174..17028307 | 1101..1234 | 100 | -> | Plus |
| arm_3R | 17033341..17033389 | 1235..1283 | 100 | -> | Plus |
| arm_3R | 17036511..17036801 | 1284..1574 | 100 | -> | Plus |
| arm_3R | 17036863..17037041 | 1575..1753 | 100 | -> | Plus |
| arm_3R | 17037109..17037312 | 1754..1957 | 100 | -> | Plus |
| arm_3R | 17037470..17038247 | 1958..2735 | 100 | | Plus |
BS11823.pep Sequence
Translation from 16 to 2736
> BS11823.pep
MHGITHLYRQHAVEKQLSGGESWSRQIYPSYGSSADASSQGSRLYSVDSS
SSSSSNSNNSGGGGSGTAGVENLGGVTGSAYAQWQSDRHSLPQAVPDAPR
SLANHHYRNSPTHQAHYQQPTSGSLKRTPSSKRSFLERSHSPAIYGSMRR
SAGPDFGSPPPTAPVGGGGYFPHDLDDIYESQTDHQYFTHTGASGPQQQR
PTAISIFHRVSAAHTSLDDYTLPGDASRQSMNSTDSGVSSGPFNRQRFDN
SSFAKSLSIDEQDPQHSPHKEGHSKHGKHHHHHSHHHHSIHELVKHFGKK
MHLWPRKHHDAQSVCTSPQNDPQENFRTRSKSLDVNTLSRPNRILDDCGA
TYKIYDRIVKEGAHMRRASADLEKRRASVGAAGRGLRGDGTLDPHHAAIL
FRDSRGLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLV
VFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDFIKILQMYY
KSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAIKILIHSRI
HRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGT
YNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLA
AEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRL
VVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASDPVLLRKVA
EVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPARSDDADSDN
NKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQEEEAADQVE
RSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQSLTPAAQE
MALVSE*
BS11823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-PE | 906 | CG17299-PE | 1..906 | 1..906 | 4712 | 100 | Plus |
| SNF4Agamma-PC | 906 | CG17299-PC | 1..906 | 1..906 | 4712 | 100 | Plus |
| SNF4Agamma-PJ | 906 | CG17299-PJ | 1..906 | 1..906 | 4712 | 100 | Plus |
| SNF4Agamma-PQ | 906 | CG17299-PQ | 1..906 | 1..906 | 4712 | 100 | Plus |
| SNF4Agamma-PP | 906 | CG17299-PP | 1..906 | 1..906 | 4712 | 100 | Plus |
