BS11824.complete Sequence
1868 bp assembled on 2009-12-07
GenBank Submission: KX805439
> BS11824.complete
GAAGTTATCAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTG
CCCTGGGCCAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCAC
CAGTTGGCCAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCA
GCAGCAGACTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACA
ATCCCTATGCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCT
GGACGACGCAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGC
TGTCCGGAATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGC
AGCAAACGCAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTG
TCCTTCCAGAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCA
AAGTTCCATCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGG
AGGGTTCGTACTCCCGTTATCCCGGACAGCAAGCACAGCCGCCGCAGCAG
CAGCAACCGCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGC
CACTTTTACTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCA
GGCAGCAGCAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAA
CAGCAGCAACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAA
GCCGGAGGCTCAACCAGCTCAGACATACGGAGTTGCCCCGCCGGAGAATT
ATCCGGAACGAGCACCAGGATTTACACGGGTTCAGGCTGGTCAGGGATCC
AGGACTCAGGTACACGCCGTTCTAGACTACGACGTGGAGGAGGGTGAGGA
GGATGAGGAGGAGGACGGAGAGGAGGAAGGACAGTTCTACGAAGGCCAAG
AGAATGATAAGTCGAATAACAATCAGATGCCCACAGTGACGCCCATCCAG
GGACCGATTTACTTGAAGAACGGGACGGTTCCAGTGGTGCCGCTCTTCTC
CTATCCGAAACTCAACAACGGATCGTTCCTACAGATTCCGATCTGGTGGA
CGGCTTTGTCGGTGGCTTTGGGACTGGATGTGCGCGGCGATGTCATCAAG
GGAGTGCCGTGCATCAAGCGATATCATCAACTGTTTTGCCCCACGGCCGG
CAATAGTTATCCCATTGACAAGATTGAACGTTTCATAGACGACAACAAGG
CCCTGATGCGACGGATGTACGGCGACTTTGAGATGAACATGGAGGGTCCT
GGCGGAGGAGGTGGCAGACAACAAGGCAAGGTGCGAAAGCGTCGCTTCAT
AGACGAGCCGGATATATTCATACCCCCGGGAGCATTTGCTGCCAATGCCG
GGGAGACCGTCGAAGCCGGAGATAGTTACTTTGGCCAACTCCGGAAAAAG
CGCCAAGCTGCCGCCGGAGGAAGTCGAAATAGAGGCGGATCTGCCGGAGG
AAGTGGCAATGGGAACACGAATGCCAATAGGCAACCGGGAAATAAGAATG
GTAGTTCGGGCACTGGAAGACTCGATGCCTGCGAGTCGAAGATTGAAATT
GTCACACCGTACTGGGCATCGAACTCCGCGGGTAAGATCAGAGCCATCGT
AAATACTCAGCATTTCGAGCAGGCGATTCACCAGGAGGTTTGCAGCAATA
CCCAAACTCCAAGATGTGAGGGCGAGTGTGGATGCGAGCAGAAATACAAA
TGGCATAGATTACTCGCCTACGATCCTGATAACGATTGCAAGGGCATTTT
TATGGATTGGTTCCTGTTTCCTTCGTGCTGTGTCTGTAGATGTAATCCCT
AGAAGCTTTCTAGACCAT
BS11824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-RA | 1836 | CG7104-PA | 1..1836 | 17..1852 | 9180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-RA | 2552 | CG7104-RA | 406..2243 | 16..1853 | 9190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7878207..7879147 | 956..16 | 4705 | 100 | Minus |
2L | 23513712 | 2L | 7874032..7874511 | 1695..1216 | 2400 | 100 | Minus |
2L | 23513712 | 2L | 7873804..7873968 | 1853..1689 | 810 | 99.4 | Minus |
2L | 23513712 | 2L | 7876031..7876165 | 1090..956 | 675 | 100 | Minus |
2L | 23513712 | 2L | 7875213..7875338 | 1215..1090 | 630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6960 | 333..762 | 302 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2739 | 335..765 | 271 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2540 | 526..733 | 256 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2856 | 318..764 | 238 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6946 | 526..694 | 177 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2541 | 527..695 | 163 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6997 | 527..712 | 156 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2661 | 656..726 | 145 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1118..1175 | 527..583 | 125 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1601 | 525..585 | 117 | 69.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 841..895 | 532..587 | 115 | 69.6 | Plus |
BS11824.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:57 Download gff for
BS11824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spz3-RA | 405..2240 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:45 Download gff for
BS11824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 407..2242 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:28 Download gff for
BS11824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spz3-RA | 405..2240 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:24 Download gff for
BS11824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 407..2242 | 17..1852 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:24 Download gff for
BS11824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7876031..7876164 | 957..1090 | 100 | <- | Minus |
2L | 7875213..7875337 | 1091..1215 | 100 | <- | Minus |
2L | 7873805..7873961 | 1696..1852 | 100 | <- | Minus |
2L | 7874032..7874511 | 1216..1695 | 100 | <- | Minus |
2L | 7878207..7879146 | 17..956 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:45 Download gff for
BS11824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7873805..7873961 | 1696..1852 | 100 | <- | Minus |
arm_2L | 7874032..7874511 | 1216..1695 | 100 | <- | Minus |
arm_2L | 7875213..7875337 | 1091..1215 | 100 | <- | Minus |
arm_2L | 7876031..7876164 | 957..1090 | 100 | <- | Minus |
arm_2L | 7878207..7879146 | 17..956 | 100 | | Minus |
BS11824.pep Sequence
Translation from 16 to 1851
> BS11824.pep
MALTNFSLPFGALGQPWGVTIAPLHPIHQLASNTNNLLYSPADHQQQTPA
EAAADPEYFKNNPYAPPQSGGYQYQNTAGRRKQSNAYLPPTAPNAVRNSV
YHIQQVQQTQQQQTQQQHQQQDQHENSVSFQSSSSRSSSSSTTGQSSIQL
TQTHASGRGPAEGSYSRYPGQQAQPPQQQQPQQKQYFNAHGSASATFTKN
SGSFSITSFGSRQQQQQPPQPQQPPPSQQQQPPPAPPPQRSRQAKPEAQP
AQTYGVAPPENYPERAPGFTRVQAGQGSRTQVHAVLDYDVEEGEEDEEED
GEEEGQFYEGQENDKSNNNQMPTVTPIQGPIYLKNGTVPVVPLFSYPKLN
NGSFLQIPIWWTALSVALGLDVRGDVIKGVPCIKRYHQLFCPTAGNSYPI
DKIERFIDDNKALMRRMYGDFEMNMEGPGGGGGRQQGKVRKRRFIDEPDI
FIPPGAFAANAGETVEAGDSYFGQLRKKRQAAAGGSRNRGGSAGGSGNGN
TNANRQPGNKNGSSGTGRLDACESKIEIVTPYWASNSAGKIRAIVNTQHF
EQAIHQEVCSNTQTPRCEGECGCEQKYKWHRLLAYDPDNDCKGIFMDWFL
FPSCCVCRCNP*
BS11824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-PA | 611 | CG7104-PA | 1..611 | 1..611 | 3308 | 100 | Plus |
spz4-PB | 597 | CG14928-PB | 447..538 | 519..609 | 281 | 50 | Plus |
cno-PF | 1721 | CG42312-PF | 937..1290 | 41..328 | 199 | 26.9 | Plus |
cno-PC | 1882 | CG2534-PB | 1098..1451 | 41..328 | 199 | 26.9 | Plus |
cno-PG | 1951 | CG42312-PG | 1167..1520 | 41..328 | 199 | 26.9 | Plus |