Clone Sequence Records
BS11827.3prime Sequence
618 bp (618 high quality bases) assembled on 2006-06-16
> BS11827.3prime
ATGGTCTAGAAAGCTTCTACTCGCATTCAGCACGCAGTTTGGCGATCTCC
AGCTGTGTCTTTTTCGCCTCCAACAAGGTGACGGTGCGTTTCAGTTCGGA
TATCTCGTTCATCTTGGTAAAGTACTCGGATTTGACCACCAGATACTCCG
TTTCCGCCTTGATCAGATCCTTCTGCAGTCGATTGGCGTCGGATGACGGG
ATCACCAGTTGATCCAGATCGGTCAAGTAGCTCACCAAGTTGGATTCCTG
ATTGCGTGCACTGCTATCATCCTCGTCGATCAGTTTGTCCAGTAGAATAT
TCGAAGTGAAGTCAATTGTGGAGCCGGAAGAGCTCTGTTCTGCCGGAGCG
GCGTCCGTAGCCTCCACCTTAATACCGAATTCAGCGGTTAGATCCTCCCG
GAACTTGAGACATGACTTCCTATGGATAATCAGCCTGTCTATGCTGGTGT
TTGATTGGCATTTCCGACAGTGGGTGCACAGCGCTCGGTACTTCTTCGGC
TCCCCATCCTTGCCGCCCTTGAACGCGGGTAGAAAGCCCAGTTTCTTCCA
AGTTTCATCCTTCGAAAGGCCCGAGGGTCGCTTGGCCTTTTTTGCTTGCG
ACATGTCGACTGATAACT
BS11827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9740-PA | 588 | CG9740-RA | 1..588 | 604..17 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 708 | CG9740-RA | 62..649 | 604..17 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9257786..9258190 | 17..421 | 2025 | 100 | Plus |
| 3R | 32079331 | 3R | 9258255..9258440 | 419..604 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:49 has no hits.
BS11827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:37 Download gff for
BS11827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:46 Download gff for
BS11827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 56..662 | 7..610 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:37 Download gff for
BS11827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf2-RA | 56..662 | 7..610 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:37 Download gff for
BS11827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9257773..9258188 | 7..419 | 99 | <- | Plus |
| 3R | 9258256..9258446 | 420..610 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:46 Download gff for
BS11827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5083495..5083910 | 7..419 | 99 | <- | Plus |
| arm_3R | 5083978..5084168 | 420..610 | 98 | | Plus |
BS11827.5prime Sequence
618 bp (618 high quality bases) assembled on 2006-06-16
> BS11827.5prime
GAAGTTATCAGTCGACATGTCGCAAGCAAAAAAGGCCAAGCGACCCTCGG
GCCTTTCGAAGGATGAAACTTGGAAGAAACTGGGCTTTCTACCCGCGTTC
AAGGGCGGCAAGGATGGGGAGCCGAAGAAGTACCGAGCGCTGTGCACCCA
CTGTCGGAAATGCCAATCAAACACCAGCATAGACAGGCTGATTATCCATA
GGAAGTCATGTCTCAAGTTCCGGGAGGATCTAACCGCTGAATTCGGTATT
AAGGTGGAGGCTACGGACGCCGCTCCGGCAGAACAGAGCTCTTCCGGCTC
CACAATTGACTTCACTTCGAATATTCTACTGGACAAACTGATCGACGAGG
ATGATAGCAGTGCACGCAATCAGGAATCCAACTTGGTGAGCTACTTGACC
GATCTGGATCAACTGGTGATCCCGTCATCCGACGCCAATCGACTGCAGAA
GGATCTGATCAAGGCGGAAACGGAGTATCTGGTGGTCAAATCCGAGTACT
TTACCAAGATGAACGAGATATCCGAACTGAAACGCACCGTCACCTTGTTG
GAGGCGAAAAAGACACAGCTGGAGATCGCCAAACTGCGTGCTGAATGCGA
GTAGAAGCTTTCTAGACC
BS11827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9740-PA | 588 | CG9740-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 708 | CG9740-RA | 62..649 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9257786..9258190 | 604..200 | 2025 | 100 | Minus |
| 3R | 32079331 | 3R | 9258255..9258440 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:41:00 has no hits.
BS11827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:38 Download gff for
BS11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:04 Download gff for
BS11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 56..662 | 11..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:27 Download gff for
BS11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf2-RA | 56..662 | 11..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:27 Download gff for
BS11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9257773..9258188 | 202..614 | 99 | <- | Minus |
| 3R | 9258256..9258446 | 11..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:04 Download gff for
BS11827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5083495..5083910 | 202..614 | 99 | <- | Minus |
| arm_3R | 5083978..5084168 | 11..201 | 98 | | Minus |
BS11827.complete Sequence
620 bp assembled on 2006-11-01
GenBank Submission: FJ636984
> BS11827.complete
GAAGTTATCAGTCGACATGTCGCAAGCAAAAAAGGCCAAGCGACCCTCGG
GCCTTTCGAAGGATGAAACTTGGAAGAAACTGGGCTTTCTACCCGCGTTC
AAGGGCGGCAAGGATGGGGAGCCGAAGAAGTACCGAGCGCTGTGCACCCA
CTGTCGGAAATGCCAATCAAACACCAGCATAGACAGGCTGATTATCCATA
GGAAGTCATGTCTCAAGTTCCGGGAGGATCTAACCGCTGAATTCGGTATT
AAGGTGGAGGCTACGGACGCCGCTCCGGCAGAACAGAGCTCTTCCGGCTC
CACAATTGACTTCACTTCGAATATTCTACTGGACAAACTGATCGACGAGG
ATGATAGCAGTGCACGCAATCAGGAATCCAACTTGGTGAGCTACTTGACC
GATCTGGATCAACTGGTGATCCCGTCATCCGACGCCAATCGACTGCAGAA
GGATCTGATCAAGGCGGAAACGGAGTATCTGGTGGTCAAATCCGAGTACT
TTACCAAGATGAACGAGATATCCGAACTGAAACGCACCGTCACCTTGTTG
GAGGCGAAAAAGACACAGCTGGAGATCGCCAAACTGCGTGCTGAATGCGA
GTAGAAGCTTTCTAGACCAT
BS11827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 588 | CG9740-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-RA | 708 | CG9740-RA | 62..649 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9257786..9258190 | 604..200 | 2025 | 100 | Minus |
| 3R | 32079331 | 3R | 9258255..9258440 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:54:38 has no hits.
BS11827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:34 Download gff for
BS11827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:27 Download gff for
BS11827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 15..621 | 11..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:13 Download gff for
BS11827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 62..649 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:35 Download gff for
BS11827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9740-RA | 15..621 | 11..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:42 Download gff for
BS11827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf2-RA | 62..649 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:42 Download gff for
BS11827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9257786..9258188 | 202..604 | 100 | <- | Minus |
| 3R | 9258256..9258440 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:13 Download gff for
BS11827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5083508..5083910 | 202..604 | 100 | <- | Minus |
| arm_3R | 5083978..5084162 | 17..201 | 100 | | Minus |
BS11827.pep Sequence
Translation from 16 to 603
> BS11827.pep
MSQAKKAKRPSGLSKDETWKKLGFLPAFKGGKDGEPKKYRALCTHCRKCQ
SNTSIDRLIIHRKSCLKFREDLTAEFGIKVEATDAAPAEQSSSGSTIDFT
SNILLDKLIDEDDSSARNQESNLVSYLTDLDQLVIPSSDANRLQKDLIKA
ETEYLVVKSEYFTKMNEISELKRTVTLLEAKKTQLEIAKLRAECE*
BS11827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf2-PA | 195 | CG9740-PA | 1..195 | 1..195 | 985 | 100 | Plus |
