Clone BS11828 Report

Search the DGRC for BS11828

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG17163-RA
Protein status:BS11828.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11828.3prime Sequence

405 bp (405 high quality bases) assembled on 2006-06-16

> BS11828.3prime
ATGGTCTAGAAAGCTTTTAGGTGCAGCAATGGTGACCGTTCTTAACGTAG
TAATTGTGCATGGCAACAGTACCATTCTTGCTATAGCTTCCGCTACCATT
GTACTGCATGTTGGACATGGAGCTGCCAATTCCGGAGCCACCTCCCGGAA
TGGGTGCGTCGTCGGTGCTGGTGGAGGCGTCAAAGGCCTTAATGGGATTC
TGGATAATCTTGCAGGTGAATTGGCGATGGGGGCCACGCTCCTGCTTAGG
TTGTATGGGGAAGCAGCACCAAAGGATAAATGCTATAAATGCCACCAGGG
TGCCTACCAGCAGTATGAAGTCCTCGATGGTCGGCTCCTCGCCCAGCAGC
ACATGATTGATTAGATAGACAAAGTCATCAAAGGGTGTCATGTCGACTGA
TAACT

BS11828.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:31 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 1716 CG17163-RA 581..955 391..17 1875 100 Minus
CG17163-RB 1451 CG17163-RB 207..578 391..17 1820 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23081632..23081861 17..246 1150 100 Plus
X 23542271 X 23081916..23082003 245..332 440 100 Plus
X 23542271 X 23082070..23082129 332..391 300 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:02:00 has no hits.

BS11828.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:25 Download gff for BS11828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 569..955 17..405 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:33 Download gff for BS11828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 569..955 17..405 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:33 Download gff for BS11828.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23081632..23081859 17..244 100 <- Plus
X 23081916..23082002 245..331 100 <- Plus
X 23082070..23082141 332..405 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:25 Download gff for BS11828.3prime
Subject Subject Range Query Range Percent Splice Strand
XHet 60450..60677 17..244 100 <- Plus
XHet 60734..60820 245..331 100 <- Plus
XHet 60888..60959 332..405 93   Plus

BS11828.5prime Sequence

405 bp (405 high quality bases) assembled on 2006-06-16

> BS11828.5prime
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCTAAAAGCTTTCT
AGACC

BS11828.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:31 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 1716 CG17163-RA 581..955 17..391 1875 100 Plus
CG17163-RB 1451 CG17163-RB 207..578 17..391 1820 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23081632..23081861 391..162 1150 100 Minus
X 23542271 X 23081916..23082003 163..76 440 100 Minus
X 23542271 X 23082070..23082129 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:02:27 has no hits.

BS11828.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:30 Download gff for BS11828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 568..955 2..391 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:20 Download gff for BS11828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 568..955 2..391 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:20 Download gff for BS11828.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23081632..23081859 164..391 100 <- Minus
X 23081916..23082002 77..163 100 <- Minus
X 23082070..23082142 2..76 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:30 Download gff for BS11828.5prime
Subject Subject Range Query Range Percent Splice Strand
XHet 60450..60677 164..391 100 <- Minus
XHet 60734..60820 77..163 100 <- Minus
XHet 60888..60960 2..76 93   Minus

BS11828.complete Sequence

407 bp assembled on 2006-11-01

GenBank Submission: FJ636985

> BS11828.complete
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCTAAAAGCTTTCT
AGACCAT

BS11828.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 375 CG17163-PA 1..375 17..391 1875 100 Plus
CG17163-RB 372 CG17163-PB 1..372 17..391 1795 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 1716 CG17163-RA 581..955 17..391 1875 100 Plus
CG17163-RB 1451 CG17163-RB 207..578 17..391 1795 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23081632..23081861 391..162 1150 100 Minus
X 23542271 X 23081916..23082003 163..76 440 100 Minus
X 23542271 X 23082070..23082129 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:59 has no hits.

BS11828.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:38 Download gff for BS11828.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 1..375 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:29 Download gff for BS11828.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 567..954 2..391 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:53 Download gff for BS11828.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 581..953 17..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:38 Download gff for BS11828.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 567..954 2..391 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:44 Download gff for BS11828.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 581..953 17..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:44 Download gff for BS11828.complete
Subject Subject Range Query Range Percent Splice Strand
X 23081634..23081859 164..389 100 <- Minus
X 23081916..23082002 77..163 100 <- Minus
X 23082070..23082129 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:53 Download gff for BS11828.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 60452..60677 164..389 100 <- Minus
XHet 60734..60820 77..163 100 <- Minus
XHet 60888..60947 17..76 100   Minus

BS11828.pep Sequence

Translation from 16 to 390

> BS11828.pep
MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ
ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS
GSYSKNGTVAMHNYYVKNGHHCCT*

BS11828.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-PA 124 CG17163-PA 1..124 1..124 681 100 Plus
CG17163-PB 123 CG17163-PB 1..123 1..124 664 99.2 Plus