Clone Sequence Records
BS11828.3prime Sequence
405 bp (405 high quality bases) assembled on 2006-06-16
> BS11828.3prime
ATGGTCTAGAAAGCTTTTAGGTGCAGCAATGGTGACCGTTCTTAACGTAG
TAATTGTGCATGGCAACAGTACCATTCTTGCTATAGCTTCCGCTACCATT
GTACTGCATGTTGGACATGGAGCTGCCAATTCCGGAGCCACCTCCCGGAA
TGGGTGCGTCGTCGGTGCTGGTGGAGGCGTCAAAGGCCTTAATGGGATTC
TGGATAATCTTGCAGGTGAATTGGCGATGGGGGCCACGCTCCTGCTTAGG
TTGTATGGGGAAGCAGCACCAAAGGATAAATGCTATAAATGCCACCAGGG
TGCCTACCAGCAGTATGAAGTCCTCGATGGTCGGCTCCTCGCCCAGCAGC
ACATGATTGATTAGATAGACAAAGTCATCAAAGGGTGTCATGTCGACTGA
TAACT
BS11828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:31 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 1716 | CG17163-RA | 581..955 | 391..17 | 1875 | 100 | Minus |
CG17163-RB | 1451 | CG17163-RB | 207..578 | 391..17 | 1820 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23081632..23081861 | 17..246 | 1150 | 100 | Plus |
X | 23542271 | X | 23081916..23082003 | 245..332 | 440 | 100 | Plus |
X | 23542271 | X | 23082070..23082129 | 332..391 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:00 has no hits.
BS11828.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:25 Download gff for
BS11828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 569..955 | 17..405 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:33 Download gff for
BS11828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 569..955 | 17..405 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:33 Download gff for
BS11828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23081632..23081859 | 17..244 | 100 | <- | Plus |
X | 23081916..23082002 | 245..331 | 100 | <- | Plus |
X | 23082070..23082141 | 332..405 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:25 Download gff for
BS11828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 60450..60677 | 17..244 | 100 | <- | Plus |
XHet | 60734..60820 | 245..331 | 100 | <- | Plus |
XHet | 60888..60959 | 332..405 | 93 | | Plus |
BS11828.5prime Sequence
405 bp (405 high quality bases) assembled on 2006-06-16
> BS11828.5prime
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCTAAAAGCTTTCT
AGACC
BS11828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:25:31 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 1716 | CG17163-RA | 581..955 | 17..391 | 1875 | 100 | Plus |
CG17163-RB | 1451 | CG17163-RB | 207..578 | 17..391 | 1820 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23081632..23081861 | 391..162 | 1150 | 100 | Minus |
X | 23542271 | X | 23081916..23082003 | 163..76 | 440 | 100 | Minus |
X | 23542271 | X | 23082070..23082129 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:02:27 has no hits.
BS11828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:30 Download gff for
BS11828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 568..955 | 2..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:20 Download gff for
BS11828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 568..955 | 2..391 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:20 Download gff for
BS11828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23081632..23081859 | 164..391 | 100 | <- | Minus |
X | 23081916..23082002 | 77..163 | 100 | <- | Minus |
X | 23082070..23082142 | 2..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:30 Download gff for
BS11828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 60450..60677 | 164..391 | 100 | <- | Minus |
XHet | 60734..60820 | 77..163 | 100 | <- | Minus |
XHet | 60888..60960 | 2..76 | 93 | | Minus |
BS11828.complete Sequence
407 bp assembled on 2006-11-01
GenBank Submission: FJ636985
> BS11828.complete
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCTAAAAGCTTTCT
AGACCAT
BS11828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 375 | CG17163-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
CG17163-RB | 372 | CG17163-PB | 1..372 | 17..391 | 1795 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 1716 | CG17163-RA | 581..955 | 17..391 | 1875 | 100 | Plus |
CG17163-RB | 1451 | CG17163-RB | 207..578 | 17..391 | 1795 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23081632..23081861 | 391..162 | 1150 | 100 | Minus |
X | 23542271 | X | 23081916..23082003 | 163..76 | 440 | 100 | Minus |
X | 23542271 | X | 23082070..23082129 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:25:59 has no hits.
BS11828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:38 Download gff for
BS11828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:29 Download gff for
BS11828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 567..954 | 2..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:53 Download gff for
BS11828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 581..953 | 17..389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:38 Download gff for
BS11828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 567..954 | 2..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:44 Download gff for
BS11828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 581..953 | 17..389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:44 Download gff for
BS11828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23081634..23081859 | 164..389 | 100 | <- | Minus |
X | 23081916..23082002 | 77..163 | 100 | <- | Minus |
X | 23082070..23082129 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:53 Download gff for
BS11828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 60452..60677 | 164..389 | 100 | <- | Minus |
XHet | 60734..60820 | 77..163 | 100 | <- | Minus |
XHet | 60888..60947 | 17..76 | 100 | | Minus |
BS11828.pep Sequence
Translation from 16 to 390
> BS11828.pep
MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ
ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS
GSYSKNGTVAMHNYYVKNGHHCCT*
BS11828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-PA | 124 | CG17163-PA | 1..124 | 1..124 | 681 | 100 | Plus |
CG17163-PB | 123 | CG17163-PB | 1..123 | 1..124 | 664 | 99.2 | Plus |