Clone Sequence Records
BS11829.3prime Sequence
670 bp (670 high quality bases) assembled on 2006-06-16
> BS11829.3prime
ATGGTCTAGAAAGCTTTTAGTAACGTCCATGATGTCCATGATGCTTGTGA
TGCTCGTGGTTACAGTTCTCGTGACCAATTCCGCCGGAGAATTCTCCCTG
TACAAGTTGGGGGCCTGCTCCGAGCTCTCCTGCGGCATATAACTGGCCCG
ATTGGGGAGCTGGTCTTCGGTAGCCTCCCTGTCCGCCGCCGTATCCCAAC
TTTCCACTCTGAGGAGTGGCATTGCCATATCCTCCCAAACGTCCTTGGCC
CGAGAGTCCAAGTGCGAATTCATTTGGGGGCACGGATGCGCCATATCCTT
TCTGTGCACTGCCGTATCCACCCTGAGTGCCGCCGTATCCCACCTGTTCA
GTCAATGGAGCGGGTTGGCCATATCCACCCTGAACGCCACCGTATCCTCC
TTGCCCGCCACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGC
CACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGCTCTGGGAA
GCTGATCCGCCGTATCCGCTTGGCGAGCTGCCGTATCCACTTTGTCCGCT
CTGTGGAACGGATCTCAAACCCCACTGGGCGGTTGCTGCTCCGTCGTATC
CCGGTCTGGCCAAGGTAATGCCCATCAGGGCGAACAGGACAACCATTAAT
TTCATTGTCGACTGATAACT
BS11829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-PA | 639 | CG8160-RA | 1..639 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 1072 | CG8160-RA | 28..668 | 655..15 | 3205 | 100 | Minus |
CG8160-RA | 1072 | CG8160-RA | 191..269 | 450..372 | 350 | 96.2 | Minus |
CG8160-RA | 1072 | CG8160-RA | 233..311 | 492..414 | 350 | 96.2 | Minus |
CG8160-RA | 1072 | CG8160-RA | 191..248 | 429..372 | 200 | 89.7 | Minus |
CG8160-RA | 1072 | CG8160-RA | 254..311 | 492..435 | 200 | 89.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15327547..15328176 | 15..644 | 3150 | 100 | Plus |
2R | 25286936 | 2R | 15327904..15327982 | 414..492 | 350 | 96.2 | Plus |
2R | 25286936 | 2R | 15327946..15328024 | 372..450 | 350 | 96.2 | Plus |
2R | 25286936 | 2R | 15327904..15327961 | 435..492 | 200 | 89.7 | Plus |
2R | 25286936 | 2R | 15327967..15328024 | 372..429 | 200 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:05:01 has no hits.
BS11829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:38 Download gff for
BS11829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-PA | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:44 Download gff for
BS11829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 23..668 | 15..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:05:45 Download gff for
BS11829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 23..668 | 15..661 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:05:45 Download gff for
BS11829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15327547..15328175 | 15..643 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:44 Download gff for
BS11829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11215052..11215680 | 15..643 | 100 | <- | Plus |
BS11829.5prime Sequence
669 bp (669 high quality bases) assembled on 2006-06-16
> BS11829.5prime
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACTAAAAGCTTTCTAGACC
BS11829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-PA | 639 | CG8160-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 1072 | CG8160-RA | 28..668 | 17..657 | 3205 | 100 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..269 | 222..300 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 233..311 | 180..258 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..248 | 243..300 | 200 | 89.7 | Plus |
CG8160-RA | 1072 | CG8160-RA | 254..311 | 180..237 | 200 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15327547..15328176 | 657..28 | 3150 | 100 | Minus |
2R | 25286936 | 2R | 15327904..15327982 | 258..180 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327946..15328024 | 300..222 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327904..15327961 | 237..180 | 200 | 89.7 | Minus |
2R | 25286936 | 2R | 15327967..15328024 | 300..243 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:43:33 has no hits.
BS11829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:39 Download gff for
BS11829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:47:44 Download gff for
BS11829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 20..668 | 7..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:03 Download gff for
BS11829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 20..668 | 7..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:03 Download gff for
BS11829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15327547..15328179 | 23..657 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:47:44 Download gff for
BS11829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11215052..11215684 | 23..657 | 99 | | Minus |
BS11829.complete Sequence
671 bp assembled on 2007-10-17
GenBank Submission: FJ636986
> BS11829.complete
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACTAAAAGCTTTCTAGACCAT
BS11829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 639 | CG8160-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG8160-RA | 639 | CG8160-PA | 164..242 | 222..300 | 350 | 96.2 | Plus |
CG8160-RA | 639 | CG8160-PA | 206..284 | 180..258 | 350 | 96.2 | Plus |
CG8160-RA | 639 | CG8160-PA | 164..221 | 243..300 | 200 | 89.7 | Plus |
CG8160-RA | 639 | CG8160-PA | 227..284 | 180..237 | 200 | 89.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 1072 | CG8160-RA | 28..668 | 17..657 | 3205 | 100 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..269 | 222..300 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 233..311 | 180..258 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..248 | 243..300 | 200 | 89.7 | Plus |
CG8160-RA | 1072 | CG8160-RA | 254..311 | 180..237 | 200 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15327547..15328176 | 657..28 | 3150 | 100 | Minus |
2R | 25286936 | 2R | 15327904..15327982 | 258..180 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327946..15328024 | 300..222 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327904..15327961 | 237..180 | 200 | 89.7 | Minus |
2R | 25286936 | 2R | 15327967..15328024 | 300..243 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:06:03 has no hits.
BS11829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:26 Download gff for
BS11829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:17 Download gff for
BS11829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 14..662 | 7..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:39 Download gff for
BS11829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 28..664 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:57 Download gff for
BS11829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 22..658 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:03 Download gff for
BS11829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 28..664 | 17..653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:03 Download gff for
BS11829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15327551..15328179 | 23..653 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:39 Download gff for
BS11829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11215056..11215684 | 23..653 | 99 | | Minus |
BS11829.pep Sequence
Translation from 16 to 654
> BS11829.pep
MKLMVVLFALMGITLARPGYDGAATAQWGLRSVPQSGQSGYGSSPSGYGG
SASQSGQGGYGGGQGGYGGGQGGYGGGQGGYGGGQGGYGGVQGGYGQPAP
LTEQVGYGGTQGGYGSAQKGYGASVPPNEFALGLSGQGRLGGYGNATPQS
GKLGYGGGQGGYRRPAPQSGQLYAAGELGAGPQLVQGEFSGGIGHENCNH
EHHKHHGHHGRY*
BS11829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-PA | 212 | CG8160-PA | 1..212 | 1..212 | 1175 | 100 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..107 | 1..122 | 252 | 45.9 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..107 | 1..122 | 252 | 45.9 | Plus |
CG5172-PD | 172 | CG5172-PD | 5..163 | 3..161 | 236 | 42 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 237..390 | 40..194 | 233 | 40.5 | Plus |
CG5172-PD | 172 | CG5172-PD | 14..167 | 30..183 | 213 | 38.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 23..113 | 76..212 | 166 | 39.3 | Plus |
CG8157-PA | 113 | CG8157-PA | 23..113 | 76..212 | 166 | 39.3 | Plus |