Clone BS11829 Report

Search the DGRC for BS11829

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG8160-RA
Protein status:BS11829.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11829.3prime Sequence

670 bp (670 high quality bases) assembled on 2006-06-16

> BS11829.3prime
ATGGTCTAGAAAGCTTTTAGTAACGTCCATGATGTCCATGATGCTTGTGA
TGCTCGTGGTTACAGTTCTCGTGACCAATTCCGCCGGAGAATTCTCCCTG
TACAAGTTGGGGGCCTGCTCCGAGCTCTCCTGCGGCATATAACTGGCCCG
ATTGGGGAGCTGGTCTTCGGTAGCCTCCCTGTCCGCCGCCGTATCCCAAC
TTTCCACTCTGAGGAGTGGCATTGCCATATCCTCCCAAACGTCCTTGGCC
CGAGAGTCCAAGTGCGAATTCATTTGGGGGCACGGATGCGCCATATCCTT
TCTGTGCACTGCCGTATCCACCCTGAGTGCCGCCGTATCCCACCTGTTCA
GTCAATGGAGCGGGTTGGCCATATCCACCCTGAACGCCACCGTATCCTCC
TTGCCCGCCACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGC
CACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGCTCTGGGAA
GCTGATCCGCCGTATCCGCTTGGCGAGCTGCCGTATCCACTTTGTCCGCT
CTGTGGAACGGATCTCAAACCCCACTGGGCGGTTGCTGCTCCGTCGTATC
CCGGTCTGGCCAAGGTAATGCCCATCAGGGCGAACAGGACAACCATTAAT
TTCATTGTCGACTGATAACT

BS11829.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-PA 639 CG8160-RA 1..639 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 1072 CG8160-RA 28..668 655..15 3205 100 Minus
CG8160-RA 1072 CG8160-RA 191..269 450..372 350 96.2 Minus
CG8160-RA 1072 CG8160-RA 233..311 492..414 350 96.2 Minus
CG8160-RA 1072 CG8160-RA 191..248 429..372 200 89.7 Minus
CG8160-RA 1072 CG8160-RA 254..311 492..435 200 89.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15327547..15328176 15..644 3150 100 Plus
2R 25286936 2R 15327904..15327982 414..492 350 96.2 Plus
2R 25286936 2R 15327946..15328024 372..450 350 96.2 Plus
2R 25286936 2R 15327904..15327961 435..492 200 89.7 Plus
2R 25286936 2R 15327967..15328024 372..429 200 89.7 Plus
Blast to na_te.dros performed on 2015-02-11 04:05:01 has no hits.

BS11829.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:38 Download gff for BS11829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-PA 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:44 Download gff for BS11829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 23..668 15..661 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:05:45 Download gff for BS11829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 23..668 15..661 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:05:45 Download gff for BS11829.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15327547..15328175 15..643 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:44 Download gff for BS11829.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11215052..11215680 15..643 100 <- Plus

BS11829.5prime Sequence

669 bp (669 high quality bases) assembled on 2006-06-16

> BS11829.5prime
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACTAAAAGCTTTCTAGACC

BS11829.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-PA 639 CG8160-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 1072 CG8160-RA 28..668 17..657 3205 100 Plus
CG8160-RA 1072 CG8160-RA 191..269 222..300 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 233..311 180..258 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 191..248 243..300 200 89.7 Plus
CG8160-RA 1072 CG8160-RA 254..311 180..237 200 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15327547..15328176 657..28 3150 100 Minus
2R 25286936 2R 15327904..15327982 258..180 350 96.2 Minus
2R 25286936 2R 15327946..15328024 300..222 350 96.2 Minus
2R 25286936 2R 15327904..15327961 237..180 200 89.7 Minus
2R 25286936 2R 15327967..15328024 300..243 200 89.7 Minus
Blast to na_te.dros performed on 2015-02-13 12:43:33 has no hits.

BS11829.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:39 Download gff for BS11829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:47:44 Download gff for BS11829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 20..668 7..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:03 Download gff for BS11829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 20..668 7..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:03 Download gff for BS11829.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15327547..15328179 23..657 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:47:44 Download gff for BS11829.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11215052..11215684 23..657 99   Minus

BS11829.complete Sequence

671 bp assembled on 2007-10-17

GenBank Submission: FJ636986

> BS11829.complete
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACTAAAAGCTTTCTAGACCAT

BS11829.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 639 CG8160-PA 1..639 17..655 3195 100 Plus
CG8160-RA 639 CG8160-PA 164..242 222..300 350 96.2 Plus
CG8160-RA 639 CG8160-PA 206..284 180..258 350 96.2 Plus
CG8160-RA 639 CG8160-PA 164..221 243..300 200 89.7 Plus
CG8160-RA 639 CG8160-PA 227..284 180..237 200 89.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 1072 CG8160-RA 28..668 17..657 3205 100 Plus
CG8160-RA 1072 CG8160-RA 191..269 222..300 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 233..311 180..258 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 191..248 243..300 200 89.7 Plus
CG8160-RA 1072 CG8160-RA 254..311 180..237 200 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15327547..15328176 657..28 3150 100 Minus
2R 25286936 2R 15327904..15327982 258..180 350 96.2 Minus
2R 25286936 2R 15327946..15328024 300..222 350 96.2 Minus
2R 25286936 2R 15327904..15327961 237..180 200 89.7 Minus
2R 25286936 2R 15327967..15328024 300..243 200 89.7 Minus
Blast to na_te.dros performed on 2014-11-27 10:06:03 has no hits.

BS11829.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:26 Download gff for BS11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:17 Download gff for BS11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 14..662 7..657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:39 Download gff for BS11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 28..664 17..653 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:57 Download gff for BS11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 22..658 17..653 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:03 Download gff for BS11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 28..664 17..653 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:03 Download gff for BS11829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15327551..15328179 23..653 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:39 Download gff for BS11829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11215056..11215684 23..653 99   Minus

BS11829.pep Sequence

Translation from 16 to 654

> BS11829.pep
MKLMVVLFALMGITLARPGYDGAATAQWGLRSVPQSGQSGYGSSPSGYGG
SASQSGQGGYGGGQGGYGGGQGGYGGGQGGYGGGQGGYGGVQGGYGQPAP
LTEQVGYGGTQGGYGSAQKGYGASVPPNEFALGLSGQGRLGGYGNATPQS
GKLGYGGGQGGYRRPAPQSGQLYAAGELGAGPQLVQGEFSGGIGHENCNH
EHHKHHGHHGRY*

BS11829.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-PA 212 CG8160-PA 1..212 1..212 1175 100 Plus
CG8157-PB 113 CG8157-PB 1..107 1..122 252 45.9 Plus
CG8157-PA 113 CG8157-PA 1..107 1..122 252 45.9 Plus
CG5172-PD 172 CG5172-PD 5..163 3..161 236 42 Plus
Cpr47Ef-PD 601 CG13214-PD 237..390 40..194 233 40.5 Plus
CG5172-PD 172 CG5172-PD 14..167 30..183 213 38.5 Plus
CG8157-PB 113 CG8157-PB 23..113 76..212 166 39.3 Plus
CG8157-PA 113 CG8157-PA 23..113 76..212 166 39.3 Plus