Clone BS11830 Report

Search the DGRC for BS11830

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG42343-RD
Protein status:BS11830.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11830.3prime Sequence

603 bp (603 high quality bases) assembled on 2006-06-16

> BS11830.3prime
ATGGTCTAGAAAGCTTTTATATGCATATTGTGCACTTGAAATGACAAATC
AAACAGAACGAAAGAGATCGGGGACAAAACGAAAGGAGTTGAAACGAAAC
GAAACGAACCGGAACTAATCGAAACGGAACGGAAGTTGAGAATTCAACGC
TGCGCTTGAAACCGATACATACCTTGGCTGGGGCTGACGAACCGTCACCA
CTCACCCGATGACCACCGAGGTTGTTCACCACGCACGTGAAGGTCGCGTC
CCGACCTTGGGCGATGGTCACGTTCTCCAGCGGAATCACAAAGTCCGGCT
CGAAGGCGCCCACTGAGGAGATTTTGTTCGAAACGGTAAGATCAATGCAG
TTACCGAGCAAGAGCAGTAGCAATAGCTGCCACCGAATAGCTGGACCACA
CCCACTTCCGGTACCAGTTCCCGTTCCTAATCCCACCAATCCCGAACCTG
ATGCAATCTCGAGCTGCGCCAGCTTGCGATGTTTGGCTACTTGGGACAAT
TTTGGTGAAAATTTGGTAGTATGCTCCTGGCTACAGCTGATGTCGGCGAT
CCGCTCGCCGCTCTCCTTCACCACCAGCAAGTTCATCATGTCGACTGATA
ACT

BS11830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12565-PA 573 CG12565-RA 1..573 589..17 2865 100 Minus
CG12565-PB 573 CG12565-RB 1..573 589..17 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 1472 CG42343-RE 246..818 589..17 2865 100 Minus
CG42343-RD 1557 CG42343-RD 331..903 589..17 2865 100 Minus
CG42343-RF 4386 CG42343-RF 246..664 589..171 2095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21441429..21441755 17..343 1635 100 Plus
X 23542271 X 21442422..21442668 343..589 1235 100 Plus
Blast to na_te.dros performed 2015-02-06 10:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1098..1137 357..398 106 76.2 Plus

BS11830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:39 Download gff for BS11830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12565-PB 1..573 17..589 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:06 Download gff for BS11830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 12..597 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:32 Download gff for BS11830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 12..597 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:32 Download gff for BS11830.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21441427..21441754 12..342 99 <- Plus
X 21442422..21442675 343..597 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:06 Download gff for BS11830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21312454..21312781 12..342 99 <- Plus
arm_X 21313449..21313702 343..597 98   Plus

BS11830.5prime Sequence

603 bp (603 high quality bases) assembled on 2006-06-16

> BS11830.5prime
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATATAAAAGCTTTCTAG
ACC

BS11830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12565-PA 573 CG12565-RA 1..573 17..589 2865 100 Plus
CG12565-PB 573 CG12565-RB 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 1472 CG42343-RE 246..818 17..589 2865 100 Plus
CG42343-RD 1557 CG42343-RD 331..903 17..589 2865 100 Plus
CG42343-RF 4386 CG42343-RF 246..664 17..435 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21441429..21441755 589..263 1635 100 Minus
X 23542271 X 21442422..21442668 263..17 1235 100 Minus
Blast to na_te.dros performed 2015-02-10 17:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1098..1137 249..208 106 76.2 Minus

BS11830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:40 Download gff for BS11830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12565-PB 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:28 Download gff for BS11830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 9..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:19 Download gff for BS11830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 324..905 9..594 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:19 Download gff for BS11830.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21441427..21441754 264..594 99 <- Minus
X 21442422..21442675 9..263 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:28 Download gff for BS11830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21312454..21312781 264..594 99 <- Minus
arm_X 21313449..21313702 9..263 98   Minus

BS11830.complete Sequence

605 bp assembled on 2006-11-01

GenBank Submission: FJ636987

> BS11830.complete
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATATAAAAGCTTTCTAG
ACCAT

BS11830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 573 CG42343-PE 1..573 17..589 2865 100 Plus
CG42343-RD 573 CG42343-PD 1..573 17..589 2865 100 Plus
CG42343-RF 1668 CG42343-PF 1..419 17..435 2095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-RE 1472 CG42343-RE 246..818 17..589 2865 100 Plus
CG42343-RD 1557 CG42343-RD 331..903 17..589 2865 100 Plus
CG42343-RF 4386 CG42343-RF 246..664 17..435 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21441429..21441755 589..263 1635 100 Minus
X 23542271 X 21442422..21442668 263..17 1235 100 Minus
Blast to na_te.dros performed 2014-11-27 10:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1098..1137 249..208 106 76.2 Minus

BS11830.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:59 Download gff for BS11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RE 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:05 Download gff for BS11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RE 235..816 9..594 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:38 Download gff for BS11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 331..901 17..587 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:00 Download gff for BS11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RE 235..816 9..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:20 Download gff for BS11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG42343-RD 331..901 17..587 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:20 Download gff for BS11830.complete
Subject Subject Range Query Range Percent Splice Strand
X 21441431..21441754 264..587 100 <- Minus
X 21442422..21442668 17..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:38 Download gff for BS11830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21312458..21312781 264..587 100 <- Minus
arm_X 21313449..21313695 17..263 100   Minus

BS11830.pep Sequence

Translation from 16 to 588

> BS11830.pep
MMNLLVVKESGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSG
LVGLGTGTGTGSGCGPAIRWQLLLLLLLGNCIDLTVSNKISSVGAFEPDF
VIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVCIGFKRSVEF
STSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTICI*

BS11830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG42343-PE 190 CG12565-PB 1..190 1..190 983 100 Plus
CG42343-PD 190 CG12565-PA 1..190 1..190 983 100 Plus
CG42343-PF 555 CG42343-PF 1..140 1..140 712 100 Plus
CG42343-PC 555 CG42343-PC 1..140 1..140 712 100 Plus
CG42343-PG 534 CG42343-PG 1..132 1..142 595 85.9 Plus