Clone Sequence Records
BS11830.3prime Sequence
603 bp (603 high quality bases) assembled on 2006-06-16
> BS11830.3prime
ATGGTCTAGAAAGCTTTTATATGCATATTGTGCACTTGAAATGACAAATC
AAACAGAACGAAAGAGATCGGGGACAAAACGAAAGGAGTTGAAACGAAAC
GAAACGAACCGGAACTAATCGAAACGGAACGGAAGTTGAGAATTCAACGC
TGCGCTTGAAACCGATACATACCTTGGCTGGGGCTGACGAACCGTCACCA
CTCACCCGATGACCACCGAGGTTGTTCACCACGCACGTGAAGGTCGCGTC
CCGACCTTGGGCGATGGTCACGTTCTCCAGCGGAATCACAAAGTCCGGCT
CGAAGGCGCCCACTGAGGAGATTTTGTTCGAAACGGTAAGATCAATGCAG
TTACCGAGCAAGAGCAGTAGCAATAGCTGCCACCGAATAGCTGGACCACA
CCCACTTCCGGTACCAGTTCCCGTTCCTAATCCCACCAATCCCGAACCTG
ATGCAATCTCGAGCTGCGCCAGCTTGCGATGTTTGGCTACTTGGGACAAT
TTTGGTGAAAATTTGGTAGTATGCTCCTGGCTACAGCTGATGTCGGCGAT
CCGCTCGCCGCTCTCCTTCACCACCAGCAAGTTCATCATGTCGACTGATA
ACT
BS11830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12565-PA | 573 | CG12565-RA | 1..573 | 589..17 | 2865 | 100 | Minus |
CG12565-PB | 573 | CG12565-RB | 1..573 | 589..17 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 1472 | CG42343-RE | 246..818 | 589..17 | 2865 | 100 | Minus |
CG42343-RD | 1557 | CG42343-RD | 331..903 | 589..17 | 2865 | 100 | Minus |
CG42343-RF | 4386 | CG42343-RF | 246..664 | 589..171 | 2095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21441429..21441755 | 17..343 | 1635 | 100 | Plus |
X | 23542271 | X | 21442422..21442668 | 343..589 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 10:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1098..1137 | 357..398 | 106 | 76.2 | Plus |
BS11830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:39 Download gff for
BS11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12565-PB | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:06 Download gff for
BS11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 12..597 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:32 Download gff for
BS11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 12..597 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:32 Download gff for
BS11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21441427..21441754 | 12..342 | 99 | <- | Plus |
X | 21442422..21442675 | 343..597 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:06 Download gff for
BS11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21312454..21312781 | 12..342 | 99 | <- | Plus |
arm_X | 21313449..21313702 | 343..597 | 98 | | Plus |
BS11830.5prime Sequence
603 bp (603 high quality bases) assembled on 2006-06-16
> BS11830.5prime
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATATAAAAGCTTTCTAG
ACC
BS11830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12565-PA | 573 | CG12565-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
CG12565-PB | 573 | CG12565-RB | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 1472 | CG42343-RE | 246..818 | 17..589 | 2865 | 100 | Plus |
CG42343-RD | 1557 | CG42343-RD | 331..903 | 17..589 | 2865 | 100 | Plus |
CG42343-RF | 4386 | CG42343-RF | 246..664 | 17..435 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21441429..21441755 | 589..263 | 1635 | 100 | Minus |
X | 23542271 | X | 21442422..21442668 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1098..1137 | 249..208 | 106 | 76.2 | Minus |
BS11830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:40 Download gff for
BS11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12565-PB | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:28 Download gff for
BS11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 9..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:19 Download gff for
BS11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 324..905 | 9..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:19 Download gff for
BS11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21441427..21441754 | 264..594 | 99 | <- | Minus |
X | 21442422..21442675 | 9..263 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:28 Download gff for
BS11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21312454..21312781 | 264..594 | 99 | <- | Minus |
arm_X | 21313449..21313702 | 9..263 | 98 | | Minus |
BS11830.complete Sequence
605 bp assembled on 2006-11-01
GenBank Submission: FJ636987
> BS11830.complete
GAAGTTATCAGTCGACATGATGAACTTGCTGGTGGTGAAGGAGAGCGGCG
AGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCA
CCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGCAGCTCGAGAT
TGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACTGGTACCGGAA
GTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACTGCTCTTGCTC
GGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCTCAGTGGGCGC
CTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACCATCGCCCAAG
GTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGGTGGTCATCGG
GTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTATCGGTTTCAA
GCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTAGTTCCGGTTC
GTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATCTCTTTCGTTC
TGTTTGATTTGTCATTTCAAGTGCACAATATGCATATAAAAGCTTTCTAG
ACCAT
BS11830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 573 | CG42343-PE | 1..573 | 17..589 | 2865 | 100 | Plus |
CG42343-RD | 573 | CG42343-PD | 1..573 | 17..589 | 2865 | 100 | Plus |
CG42343-RF | 1668 | CG42343-PF | 1..419 | 17..435 | 2095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-RE | 1472 | CG42343-RE | 246..818 | 17..589 | 2865 | 100 | Plus |
CG42343-RD | 1557 | CG42343-RD | 331..903 | 17..589 | 2865 | 100 | Plus |
CG42343-RF | 4386 | CG42343-RF | 246..664 | 17..435 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21441429..21441755 | 589..263 | 1635 | 100 | Minus |
X | 23542271 | X | 21442422..21442668 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1098..1137 | 249..208 | 106 | 76.2 | Minus |
BS11830.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:59 Download gff for
BS11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RE | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:05 Download gff for
BS11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RE | 235..816 | 9..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:38 Download gff for
BS11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 331..901 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:00 Download gff for
BS11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RE | 235..816 | 9..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:20 Download gff for
BS11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42343-RD | 331..901 | 17..587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:20 Download gff for
BS11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21441431..21441754 | 264..587 | 100 | <- | Minus |
X | 21442422..21442668 | 17..263 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:38 Download gff for
BS11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21312458..21312781 | 264..587 | 100 | <- | Minus |
arm_X | 21313449..21313695 | 17..263 | 100 | | Minus |
BS11830.pep Sequence
Translation from 16 to 588
> BS11830.pep
MMNLLVVKESGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSG
LVGLGTGTGTGSGCGPAIRWQLLLLLLLGNCIDLTVSNKISSVGAFEPDF
VIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVCIGFKRSVEF
STSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTICI*
BS11830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42343-PE | 190 | CG12565-PB | 1..190 | 1..190 | 983 | 100 | Plus |
CG42343-PD | 190 | CG12565-PA | 1..190 | 1..190 | 983 | 100 | Plus |
CG42343-PF | 555 | CG42343-PF | 1..140 | 1..140 | 712 | 100 | Plus |
CG42343-PC | 555 | CG42343-PC | 1..140 | 1..140 | 712 | 100 | Plus |
CG42343-PG | 534 | CG42343-PG | 1..132 | 1..142 | 595 | 85.9 | Plus |