BS11832.complete Sequence
2591 bp assembled on 2009-12-07
GenBank Submission: KX806168
> BS11832.complete
GAAGTTATCAGTCGACATGGTGCGGTTAAGTGCAGCCTGGAGCTGCTGTT
TTTTGGCCCTGATTGCGTTGGTATCCACTGTCGCCTCCTCCGCTGCGGAT
TATCCGGGTGTCATCGAACTGGTGGGTTATAGCAATCGCCGCGCACGGAC
TTACTTCCAAGAGCAACCCCGCTCCAATCCCAATCCCAAGCCGGGTTTGA
CTTCGGCCAAAACCCGGGCGGATATTGAGACCGTGAAGCGGAATATCCGT
AAATACGATCGTTTGCTAGAGTTGGATACGAAAAATCTGCCAGAGCAGCA
AAAGGATATGCTCGCCAGGATTGTGGAGCGAGTGGCCAGGCTCAAGGAAT
CCCTGGACATTGAGGAGCAGCAATTTAACCAGCAGGAAGCTACCTCCTCC
AGGAGCAGTAGTAGTACCACCACTAGTGCATCCAGTACTCAAGAATCGCA
AACAGAAGCGGAAACGGAGCTGGATCAGGAGCCGATCGAGCAGAGCACAC
AGCTGCCCACTGGAGCCACCGAAGCTGAAACGGATCCCACCCTAATCCTA
GACGAAACTACGCTGCTGGAGCTGCAGAACACGATGAACGAGCAGGCTGC
CATGAGCACCATAATGAAGGAAATGCCCACGACCACGGATATGAGTCAGC
AGGAAGCGGAATCGGAGGTCCCCGACGAGGAGGGAGAGACCACCTCACCA
AATCTGACCACCCAATCGGAGGCAGCGACGACCAGTGATGAATCCCTCAC
CGATTCCACTGATCCCGATGATCAATTCGTAGCTGCCAGATCGAATAACA
ATATAGCGGCCATAACGGCAGCGGATGATGCCGATGGCACCACCACAACC
ACCGCCAATACGGGCAGTCAGCAGCGCACGTTGACCACCATGGGAAAACT
TAAGAATCGGGCCACCAAGCGACCCTTCGCCCACAAGGTCACCGCCGCCC
TGAAACGAGGAGGTCAGCGTCCGAGTAGCGTGAGTGCGGCAGCTGCGAGT
GCGGCAGCGGCCTCAAAACCCAGTAGCAGCACCACCACCGCCGCCGCCGC
CAGCAGCACCACCCAGAAACAGAAATTGGCCACCAACAGTTTCCAGCAGA
AGCAGCAGCAAGCGAAGCCCCTGCAAAAGGTCACACCTTCGATTGGCGGT
GGTGGATCATCCAACCCGTCCTCGGCATCCATTCCCTCGGCTACCACGAA
TTCCGCAGCTCCCTCCTTGCCTATCGAGCAATTGTATACCCGTACTCCCC
AGGCCAATATCCCATTGGCAGCAGCAGCAGCAGCAGCAACCTCATCCGCC
TCAGCAGCGGCAGCAGCAGGATCAGCAGGATCGGGAGCCACACCAGCCAC
CTACAGCAGCCAGCATGACAGCATGGTATACGATGGACATGTCAATGCGT
CGGCCTTGATCGACAGCCTGAACACAAACGCTCGGGAGGAATACTACCAG
CAGAAACTAGGAGCAGGCAACAAGGATAACAAGAAAACGGCGACAGCGAA
ACCGACGAAATATCATTATTATCCGCACAATCAGCACATCTATCTGCTGC
CAGAGTGTGCCATTCAGCAAGTTTGTAACGCCGTCTACGTGAGATTGAAC
TACACCCAACCACTGTGCGCCTGTCCATCCAGATATCGTGATCCCTGCTC
GGCCAGTCTGAATGAAGATGATCAGCATACCACAAAATTGGTTGGCGATA
CCAAGAAGAAGGCCATCACATTGGCCAAGACCTGCGAGGCCACCACCGAG
ATGCGCGAGTGCCGCTCGCCCAAGGATTGGTCCCTTCTGGCGCTCCAAAA
CACACGAACCGGCAAGTCGCACTACTTGGTCATCTGCCGCTGTCCCGATC
ACTTCAAGATGGAGGGACCCATGGCCCATGACCAGCCCACCTATGCCAGC
GTGCCCGGAATCCGAGTATTTGGCATGATGTGCGTTAAGCCGGGATATTC
GGTGCGCAAGCCAAGCAACCAGCCACCCAAGAGGTATCAACTCCAGAAGC
CATTCTATCGCCCCTCGGTGGGAACCACGGTGGGTGGCCAAAAGGATAGC
TACGGCAGACCCATCTACGGTGGCTCCAGCTCCTCGGGCAGCTCGGCCAT
CAGCTCCAACTACCAGCCGCAGGACTCGAGCTTCCAGAGCGGAGGCAGTA
GTTCGTATCAGTATCTCAACCGACCGGAGAGCGGTGTTAGCCACAGCTCC
GCCAACTTCCGTCCGGATCAGTTCTCGATCAACAATTTCCCGAGCAGCAA
CTACGGACGCAACAACGAGCGGCGCGGCGATCTGCCGCCCATCGAAGCTA
TATCGAGTGGATCGGGAACCGGAGCCGAGGAGCAGCCGAGCAGCAGTACA
CCAGCGGCTGAGGAGGAGGAGGCCAGGACCACTGTGCAGGCAGAACAGGA
GACGGAACCGGCGGAGGAAGCAGTTCCAGCCGCGACAGCGGAACTGACCA
CCACAGCGGAGGAGGCTGCACTCGGAAGCCGGACCAGGCGATCCCTACCC
GATACGGACGACTATGAGCCGGAGTTCCCGTGGGATCGCGTGCTCGAATT
CCAGCAGAGCATCATTTGGGACTAAAAGCTTTCTAGACCAT
BS11832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-c73A-RB | 2559 | CG32159-PB | 1..2559 | 17..2575 | 12780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-c73A-RB | 3496 | CG32159-RB | 346..2904 | 17..2575 | 12780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16450147..16451613 | 1483..17 | 7335 | 100 | Minus |
| 3L | 28110227 | 3L | 16423387..16424100 | 2575..1862 | 3555 | 99.9 | Minus |
| 3L | 28110227 | 3L | 16424168..16424320 | 1862..1710 | 765 | 100 | Minus |
| 3L | 28110227 | 3L | 16426767..16426917 | 1632..1482 | 755 | 100 | Minus |
| 3L | 28110227 | 3L | 16426576..16426660 | 1712..1628 | 425 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2384 | 1051..1129 | 142 | 70 | Plus |
BS11832.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:52 Download gff for
BS11832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32159-RB | 342..2898 | 17..2573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:47 Download gff for
BS11832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-c73A-RB | 346..2902 | 17..2573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:08 Download gff for
BS11832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32159-RB | 342..2898 | 17..2573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:55 Download gff for
BS11832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-c73A-RB | 346..2902 | 17..2573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:55 Download gff for
BS11832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16423389..16424099 | 1863..2573 | 99 | <- | Minus |
| 3L | 16424168..16424318 | 1712..1862 | 100 | <- | Minus |
| 3L | 16426577..16426655 | 1633..1711 | 100 | <- | Minus |
| 3L | 16426767..16426915 | 1484..1632 | 100 | <- | Minus |
| 3L | 16450147..16451613 | 17..1483 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:47 Download gff for
BS11832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16416489..16417199 | 1863..2573 | 99 | <- | Minus |
| arm_3L | 16417268..16417418 | 1712..1862 | 100 | <- | Minus |
| arm_3L | 16419677..16419755 | 1633..1711 | 100 | <- | Minus |
| arm_3L | 16419867..16420015 | 1484..1632 | 100 | <- | Minus |
| arm_3L | 16443247..16444713 | 17..1483 | 100 | | Minus |
BS11832.pep Sequence
Translation from 16 to 2574
> BS11832.pep
MVRLSAAWSCCFLALIALVSTVASSAADYPGVIELVGYSNRRARTYFQEQ
PRSNPNPKPGLTSAKTRADIETVKRNIRKYDRLLELDTKNLPEQQKDMLA
RIVERVARLKESLDIEEQQFNQQEATSSRSSSSTTTSASSTQESQTEAET
ELDQEPIEQSTQLPTGATEAETDPTLILDETTLLELQNTMNEQAAMSTIM
KEMPTTTDMSQQEAESEVPDEEGETTSPNLTTQSEAATTSDESLTDSTDP
DDQFVAARSNNNIAAITAADDADGTTTTTANTGSQQRTLTTMGKLKNRAT
KRPFAHKVTAALKRGGQRPSSVSAAAASAAAASKPSSSTTTAAAASSTTQ
KQKLATNSFQQKQQQAKPLQKVTPSIGGGGSSNPSSASIPSATTNSAAPS
LPIEQLYTRTPQANIPLAAAAAAATSSASAAAAAGSAGSGATPATYSSQH
DSMVYDGHVNASALIDSLNTNAREEYYQQKLGAGNKDNKKTATAKPTKYH
YYPHNQHIYLLPECAIQQVCNAVYVRLNYTQPLCACPSRYRDPCSASLNE
DDQHTTKLVGDTKKKAITLAKTCEATTEMRECRSPKDWSLLALQNTRTGK
SHYLVICRCPDHFKMEGPMAHDQPTYASVPGIRVFGMMCVKPGYSVRKPS
NQPPKRYQLQKPFYRPSVGTTVGGQKDSYGRPIYGGSSSSGSSAISSNYQ
PQDSSFQSGGSSSYQYLNRPESGVSHSSANFRPDQFSINNFPSSNYGRNN
ERRGDLPPIEAISSGSGTGAEEQPSSSTPAAEEEEARTTVQAEQETEPAE
EAVPAATAELTTTAEEAALGSRTRRSLPDTDDYEPEFPWDRVLEFQQSII
WD*
BS11832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-c73A-PB | 852 | CG32159-PB | 1..852 | 1..852 | 4355 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 602..1279 | 121..817 | 204 | 20.8 | Plus |
| CG46026-PA | 666 | CG46026-PA | 320..651 | 131..447 | 198 | 23.2 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 597..921 | 126..452 | 196 | 23.4 | Plus |
| Muc68Ca-PA | 3135 | CG18331-PA | 127..887 | 113..828 | 196 | 19.2 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 501..825 | 126..452 | 194 | 22.8 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 270..929 | 109..834 | 191 | 18.9 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 657..976 | 123..443 | 185 | 23.1 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 389..729 | 126..452 | 184 | 21.6 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 211..544 | 124..443 | 180 | 22 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 741..1065 | 126..452 | 180 | 22.5 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 709..1024 | 126..443 | 179 | 23.1 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 465..809 | 123..452 | 176 | 22 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 805..1104 | 126..443 | 175 | 23.6 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 742..1107 | 110..505 | 172 | 20.7 | Plus |
| CG46026-PA | 666 | CG46026-PA | 269..569 | 131..445 | 172 | 23.7 | Plus |
| CG46026-PA | 666 | CG46026-PA | 206..516 | 130..448 | 171 | 24.3 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 277..617 | 126..452 | 170 | 21.4 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 837..1158 | 126..443 | 168 | 21.7 | Plus |
| CG46026-PA | 666 | CG46026-PA | 146..467 | 126..445 | 166 | 22.9 | Plus |
| CG46026-PA | 666 | CG46026-PA | 422..660 | 131..400 | 166 | 26.3 | Plus |
| CG46026-PA | 666 | CG46026-PA | 235..538 | 131..431 | 164 | 21 | Plus |
| CG46026-PA | 666 | CG46026-PA | 121..399 | 160..445 | 162 | 24.4 | Plus |
| CG46026-PA | 666 | CG46026-PA | 388..662 | 131..427 | 161 | 24.4 | Plus |
