BS11834.complete Sequence
1019 bp assembled on 2006-11-01
GenBank Submission: FJ636988
> BS11834.complete
GAAGTTATCAGTCGACATGAATGCCACCTCGCCAAAGTCATCGCTGGTCA
AGTTGGGTCTGCATACCAATAAACAAAAGACTCTGAAGGTTATGGTCCTG
GGCCAAAGTGGTGTGGGAAAAACGGCCATGGTGGTGCGTTTTATTACCCG
ACGCTTCATTGGCGAGTATGATCCTAATCTGGAGAAGATTTACACCTGCC
AAACCACGCTGGACAAGGAGCAGATTCAGTTTGACATTCTGGACGCCACC
GGTCAGCTACAAGAACTAGATGGAGTTAGTCTGGAGTCCAACATCCGCTG
GGCCGACGCATTTATACTAATGTACTCCATTACGGACAAGTGTTCCTTCG
ACGAGTGCAGTCGCCTAAAGTTCCTCATCAATTACAATAAACGAAGACGC
AAGTTGGGCTCGGCCAGTAAAGAATACGCACTGGATATTCCTGTCATACT
GGTGGGCAATAAGACAGATCAGCCGGGCGATCGAATGGTCAGCTTGGAAG
AGGGTCAGCGCCGATTCAGGGAGTTATCCTGCTCCTGTTTTCACGAGATT
TCCGTCAGAGAGAGCGTGGATCAAGTGCAGAATGTTTTTCGCGATGTGTT
TCGCTTCTGGCGAGTCTTCAGCAAATTCCCCAAGCTCAAGCGCTCCACCA
GCGATGTGGCCAATACGGATGGAATCCTCACGCCCGATTCGGGATCCTGT
TCCTTCTACGATGCCTCGTCTTTGGGCGTCGGTCGACATTCCTTTCTGGT
CATCGGAAGCGCCTGTTTGGAGGAGAGCAACGGTGACCATACGGAGTCTA
CGGATGAGATTACGAGTAGCAGTTTGAGCAGCTCACGCAGCGACATCGAT
GCTCCCTTCCGTAGTAGAGCTTCGACGGACGGCACCCTGTTGTCCCGACC
ACGTAGATGGCGGTATCCACCGCCGGGATGCCTGCTGCCACACACGAATC
GCGTGGAGCGACGGATGAGCATTTCCACCAGGGGCAGTAATGCCAGTTAC
TAGAAGCTTTCTAGACCAT
BS11834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-RB | 987 | CG5160-PB | 1..987 | 17..1003 | 4935 | 100 | Plus |
| CG5160-RA | 987 | CG5160-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-RB | 1173 | CG5160-RB | 95..1083 | 16..1004 | 4945 | 100 | Plus |
| CG5160-RA | 1613 | CG5160-RA | 535..1523 | 16..1004 | 4945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7391074..7391503 | 1004..575 | 2150 | 100 | Minus |
| 2L | 23513712 | 2L | 7391860..7392019 | 422..263 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 7391644..7391798 | 576..422 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 7392075..7392213 | 263..125 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 7392274..7392383 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:02:11 has no hits.
BS11834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:02 Download gff for
BS11834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 1..987 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:39 Download gff for
BS11834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 189..1175 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:59 Download gff for
BS11834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 536..1522 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:02 Download gff for
BS11834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 179..1176 | 4..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:47 Download gff for
BS11834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5160-RA | 536..1522 | 17..1003 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:47 Download gff for
BS11834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7392076..7392212 | 126..262 | 100 | <- | Minus |
| 2L | 7392274..7392382 | 17..125 | 100 | | Minus |
| 2L | 7391075..7391503 | 575..1003 | 100 | <- | Minus |
| 2L | 7391646..7391798 | 422..574 | 100 | <- | Minus |
| 2L | 7391861..7392019 | 263..421 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:59 Download gff for
BS11834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7391075..7391503 | 575..1003 | 100 | <- | Minus |
| arm_2L | 7391646..7391798 | 422..574 | 100 | <- | Minus |
| arm_2L | 7391861..7392019 | 263..421 | 100 | <- | Minus |
| arm_2L | 7392076..7392212 | 126..262 | 100 | <- | Minus |
| arm_2L | 7392274..7392382 | 17..125 | 100 | | Minus |
BS11834.pep Sequence
Translation from 16 to 1002
> BS11834.pep
MNATSPKSSLVKLGLHTNKQKTLKVMVLGQSGVGKTAMVVRFITRRFIGE
YDPNLEKIYTCQTTLDKEQIQFDILDATGQLQELDGVSLESNIRWADAFI
LMYSITDKCSFDECSRLKFLINYNKRRRKLGSASKEYALDIPVILVGNKT
DQPGDRMVSLEEGQRRFRELSCSCFHEISVRESVDQVQNVFRDVFRFWRV
FSKFPKLKRSTSDVANTDGILTPDSGSCSFYDASSLGVGRHSFLVIGSAC
LEESNGDHTESTDEITSSSLSSSRSDIDAPFRSRASTDGTLLSRPRRWRY
PPPGCLLPHTNRVERRMSISTRGSNASY*
BS11834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5160-PB | 328 | CG5160-PB | 1..328 | 1..328 | 1694 | 100 | Plus |
| CG5160-PA | 328 | CG5160-PA | 1..328 | 1..328 | 1694 | 100 | Plus |
| CG8519-PA | 207 | CG8519-PA | 16..169 | 23..194 | 264 | 36.6 | Plus |
| Ric-PB | 264 | CG8418-PB | 58..211 | 21..186 | 237 | 32.3 | Plus |
| Ric-PA | 264 | CG8418-PA | 58..211 | 21..186 | 237 | 32.3 | Plus |
