Clone BS11838 Report

Search the DGRC for BS11838

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha3-RA
Protein status:BS11838.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11838.3prime Sequence

792 bp (734 high quality bases) assembled on 2006-06-16

> BS11838.3prime
ATGGTCTAGAAAGCTTTTACTTGGTCGGCTGCTTCGCTTGCTTCTCCTTC
TTGGCAGCCTCGGCCTCCGCCTGTACCTTTGTGTACTTCTCGATCAGCTT
CTCCACATCGGGTTTCTCCAGGACACTGTATACGGTCTTATTGTCCACAC
GCTGCAGCGTGGCCATCTCGACCTTCTCCGGGGTCAGCTTGGTGGTGTCC
AGGGTCATGCTCAGTACCTTGATGGCCAAATCCTTGGCGTCCGCCAGCGT
CAGCTTCACGTTCTCCTTATCGGCCAGCTCCTGCTTCAGCATGGAGATCG
CGGCACCGAAGTTGTTGCCAATACAGGTGGCCTTCCATCCGCCGTAGTTG
CCGCTGGGATCCGACTGGTACAGTTGGTAGCCGTACTTGTTGTCCCATCC
CATGTAGAGCAGCGAGACGCCGAAGGGACGCTTTCCGCCGTACTGAGTGT
ACGCCTGTTTGATGTCGCAGAGGTGCGACACCAGCTGCTCGCAGGGAATC
ACCTCGCCGTAGCTGAACTGGTAACGCTGGGCAATCAGACGCAGTTCTGA
GGTCAGCACATTGGCATCGGAGGTGATGCCAGCCACCGAGCAGACCATGT
TGTCGTTCAGGCGATAGATCTTCTCCGAAGGAATGGCGCTGTCCAGCAAT
TTGTTTGTGCTGCGGCACTCGGCTGCCAACAGGATGCCGTCCTCGGCGAG
GATTCCGAGGCAGGTTCCGGCGTGCGAGATGGCCTCCATGGCGTACTCCA
CCTGGTACAAACGGCCCTCCGGCGAGAAGATCGTGGTGCGGG

BS11838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9327-PA 795 Pros29-RA 20..795 792..17 3880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha3-RA 973 CG9327-RA 111..886 792..17 3880 100 Minus
Prosalpha3T-RA 889 CG1736-RA 54..526 792..317 375 72.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20995446..20996031 602..17 2930 100 Minus
2R 25286936 2R 20995119..20995308 792..603 950 100 Minus
3R 32079331 3R 31122890..31123119 317..546 370 77.4 Plus
3R 32079331 3R 31123245..31123362 675..792 215 78.8 Plus
Blast to na_te.dros performed on 2015-02-10 17:19:11 has no hits.

BS11838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:43 Download gff for BS11838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9327-PA 20..795 17..792 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:29 Download gff for BS11838.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha3-RA 111..886 17..792 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:23 Download gff for BS11838.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha3-RA 111..886 17..792 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:23 Download gff for BS11838.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20995119..20995308 603..792 100 -> Minus
2R 20995446..20996031 17..602 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:29 Download gff for BS11838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16882624..16882813 603..792 100 -> Minus
arm_2R 16882951..16883536 17..602 100   Minus

BS11838.5prime Sequence

774 bp (737 high quality bases) assembled on 2006-06-16

> BS11838.5prime
GAAGTTATCAGTCGACATGGCTCGCCGCTATGATTCCCGCACCACGATCT
TCTCGCCGGAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGAGGCCATC
TCGCACGCCGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCATCCTGTT
GGCAGCCGAGTGCCGCAGCACAAACAAATTGCTGGACAGCGCCATTCCTT
CGGAGAAGATCTATCGCCTGAACGACAACATGGTCTGCTCGGTGGCTGGC
ATCACCTCCGATGCCAATGTGCTGACCTCAGAACTGCGTCTGATTGCCCA
GCGTTACCAGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAGCTGGTGT
CGCACCTCTGCGACATCAAACAGGCGTACACTCAGTACGGCGGAAAGCGT
CCCTTCGGCGTCTCGCTGCTCTACATGGGATGGGACAACAAGTACGGCTA
CCAACTGTACCAGTCGGATCCCAGCGGCAACTACGGCGGATGGAAGGCCA
CCTGTATTGGCAACAACTTCGGTGCCGCGATCTCCATGCTGAAGCAGGAG
CTGGCCGATAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCAAGGATTT
GGCCATCAAGGTACTGAGCATGACCCTGGACACCACCAAGCTGACCCCGG
AGAAGGTCGAGATGGCCACGCTGCAGCGTGTGGACAATAAGACCGTATAC
AGTGTCCTGGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGTACACAAA
GGTACAGGCGGAGGCCGAGGCTGC

BS11838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9327-PA 795 Pros29-RA 1..758 17..774 3790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha3-RA 973 CG9327-RA 92..849 17..774 3790 100 Plus
Prosalpha3T-RA 889 CG1736-RA 50..526 32..511 395 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20995446..20995994 226..774 2745 100 Plus
2R 25286936 2R 20995102..20995308 19..225 1035 100 Plus
3R 32079331 3R 31122890..31123119 511..282 370 77.4 Minus
Blast to na_te.dros performed on 2015-02-11 09:06:19 has no hits.

BS11838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:44 Download gff for BS11838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9327-PA 1..758 17..774 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:51 Download gff for BS11838.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha3-RA 88..849 10..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:35 Download gff for BS11838.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha3-RA 88..849 10..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:35 Download gff for BS11838.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20995097..20995308 12..225 98 -> Plus
2R 20995446..20995994 226..774 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:51 Download gff for BS11838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16882602..16882813 12..225 98 -> Plus
arm_2R 16882951..16883499 226..774 100   Plus

BS11838.complete Sequence

827 bp assembled on 2006-11-01

GenBank Submission: FJ636989

> BS11838.complete
GAAGTTATCAGTCGACATGGCTCGCCGCTATGATTCCCGCACCACGATCT
TCTCGCCGGAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGAGGCCATC
TCGCACGCCGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCATCCTGTT
GGCAGCCGAGTGCCGCAGCACAAACAAATTGCTGGACAGCGCCATTCCTT
CGGAGAAGATCTATCGCCTGAACGACAACATGGTCTGCTCGGTGGCTGGC
ATCACCTCCGATGCCAATGTGCTGACCTCAGAACTGCGTCTGATTGCCCA
GCGTTACCAGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAGCTGGTGT
CGCACCTCTGCGACATCAAACAGGCGTACACTCAGTACGGCGGAAAGCGT
CCCTTCGGCGTCTCGCTGCTCTACATGGGATGGGACAACAAGTACGGCTA
CCAACTGTACCAGTCGGATCCCAGCGGCAACTACGGCGGATGGAAGGCCA
CCTGTATTGGCAACAACTTCGGTGCCGCGATCTCCATGCTGAAGCAGGAG
CTGGCCGATAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCAAGGATTT
GGCCATCAAGGTACTGAGCATGACCCTGGACACCACCAAGCTGACCCCGG
AGAAGGTCGAGATGGCCACGCTGCAGCGTGTGGACAATAAGACCGTATAC
AGTGTCCTGGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGTACACAAA
GGTACAGGCGGAGGCCGAGGCTGCCAAGAAGGAGAAGCAAGCGAAGCAGC
CGACCAAGTAAAAGCTTTCTAGACCAT

BS11838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha3-RA 795 CG9327-PA 1..795 17..811 3975 100 Plus
Prosalpha3T-RA 756 CG1736-PA 263..492 282..511 370 77.4 Plus
Prosalpha3T-RA 756 CG1736-PA 16..137 32..153 235 79.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha3-RA 973 CG9327-RA 92..886 17..811 3975 100 Plus
Prosalpha3T-RA 889 CG1736-RA 297..526 282..511 370 77.4 Plus
Prosalpha3T-RA 889 CG1736-RA 50..171 32..153 235 79.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20995446..20996031 226..811 2930 100 Plus
2R 25286936 2R 20995102..20995308 19..225 1035 100 Plus
3R 32079331 3R 31122890..31123119 511..282 370 77.4 Minus
Blast to na_te.dros performed on 2014-11-27 08:02:42 has no hits.

BS11838.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:05 Download gff for BS11838.complete
Subject Subject Range Query Range Percent Splice Strand
Pros29-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:08 Download gff for BS11838.complete
Subject Subject Range Query Range Percent Splice Strand
Pros29-RA 86..884 10..811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:37 Download gff for BS11838.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha3-RA 92..884 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:05 Download gff for BS11838.complete
Subject Subject Range Query Range Percent Splice Strand
Pros29-RA 86..884 10..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:54 Download gff for BS11838.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha3-RA 92..884 17..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:54 Download gff for BS11838.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20995101..20995308 17..225 99 -> Plus
2R 20995446..20996029 226..809 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:37 Download gff for BS11838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16882606..16882813 17..225 99 -> Plus
arm_2R 16882951..16883534 226..809 100   Plus

BS11838.pep Sequence

Translation from 16 to 810

> BS11838.pep
MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECR
STNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFS
YGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQS
DPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVL
SMTLDTTKLTPEKVEMATLQRVDNKTVYSVLEKPDVEKLIEKYTKVQAEA
EAAKKEKQAKQPTK*

BS11838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha3-PA 264 CG9327-PA 1..264 1..264 1354 100 Plus
Prosalpha3T-PA 251 CG1736-PA 1..241 1..242 829 64 Plus
Prosalpha2-PA 234 CG5266-PA 5..230 4..231 343 39.1 Plus
Prosalpha4T2-PB 252 CG4569-PB 1..250 1..257 335 30 Plus
Prosalpha4T2-PA 252 CG4569-PA 1..250 1..257 335 30 Plus