Clone Sequence Records
BS11838.3prime Sequence
792 bp (734 high quality bases) assembled on 2006-06-16
> BS11838.3prime
ATGGTCTAGAAAGCTTTTACTTGGTCGGCTGCTTCGCTTGCTTCTCCTTC
TTGGCAGCCTCGGCCTCCGCCTGTACCTTTGTGTACTTCTCGATCAGCTT
CTCCACATCGGGTTTCTCCAGGACACTGTATACGGTCTTATTGTCCACAC
GCTGCAGCGTGGCCATCTCGACCTTCTCCGGGGTCAGCTTGGTGGTGTCC
AGGGTCATGCTCAGTACCTTGATGGCCAAATCCTTGGCGTCCGCCAGCGT
CAGCTTCACGTTCTCCTTATCGGCCAGCTCCTGCTTCAGCATGGAGATCG
CGGCACCGAAGTTGTTGCCAATACAGGTGGCCTTCCATCCGCCGTAGTTG
CCGCTGGGATCCGACTGGTACAGTTGGTAGCCGTACTTGTTGTCCCATCC
CATGTAGAGCAGCGAGACGCCGAAGGGACGCTTTCCGCCGTACTGAGTGT
ACGCCTGTTTGATGTCGCAGAGGTGCGACACCAGCTGCTCGCAGGGAATC
ACCTCGCCGTAGCTGAACTGGTAACGCTGGGCAATCAGACGCAGTTCTGA
GGTCAGCACATTGGCATCGGAGGTGATGCCAGCCACCGAGCAGACCATGT
TGTCGTTCAGGCGATAGATCTTCTCCGAAGGAATGGCGCTGTCCAGCAAT
TTGTTTGTGCTGCGGCACTCGGCTGCCAACAGGATGCCGTCCTCGGCGAG
GATTCCGAGGCAGGTTCCGGCGTGCGAGATGGCCTCCATGGCGTACTCCA
CCTGGTACAAACGGCCCTCCGGCGAGAAGATCGTGGTGCGGG
BS11838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9327-PA | 795 | Pros29-RA | 20..795 | 792..17 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha3-RA | 973 | CG9327-RA | 111..886 | 792..17 | 3880 | 100 | Minus |
Prosalpha3T-RA | 889 | CG1736-RA | 54..526 | 792..317 | 375 | 72.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20995446..20996031 | 602..17 | 2930 | 100 | Minus |
2R | 25286936 | 2R | 20995119..20995308 | 792..603 | 950 | 100 | Minus |
3R | 32079331 | 3R | 31122890..31123119 | 317..546 | 370 | 77.4 | Plus |
3R | 32079331 | 3R | 31123245..31123362 | 675..792 | 215 | 78.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:19:11 has no hits.
BS11838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:43 Download gff for
BS11838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9327-PA | 20..795 | 17..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:29 Download gff for
BS11838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha3-RA | 111..886 | 17..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:23 Download gff for
BS11838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha3-RA | 111..886 | 17..792 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:23 Download gff for
BS11838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20995119..20995308 | 603..792 | 100 | -> | Minus |
2R | 20995446..20996031 | 17..602 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:29 Download gff for
BS11838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16882624..16882813 | 603..792 | 100 | -> | Minus |
arm_2R | 16882951..16883536 | 17..602 | 100 | | Minus |
BS11838.5prime Sequence
774 bp (737 high quality bases) assembled on 2006-06-16
> BS11838.5prime
GAAGTTATCAGTCGACATGGCTCGCCGCTATGATTCCCGCACCACGATCT
TCTCGCCGGAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGAGGCCATC
TCGCACGCCGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCATCCTGTT
GGCAGCCGAGTGCCGCAGCACAAACAAATTGCTGGACAGCGCCATTCCTT
CGGAGAAGATCTATCGCCTGAACGACAACATGGTCTGCTCGGTGGCTGGC
ATCACCTCCGATGCCAATGTGCTGACCTCAGAACTGCGTCTGATTGCCCA
GCGTTACCAGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAGCTGGTGT
CGCACCTCTGCGACATCAAACAGGCGTACACTCAGTACGGCGGAAAGCGT
CCCTTCGGCGTCTCGCTGCTCTACATGGGATGGGACAACAAGTACGGCTA
CCAACTGTACCAGTCGGATCCCAGCGGCAACTACGGCGGATGGAAGGCCA
CCTGTATTGGCAACAACTTCGGTGCCGCGATCTCCATGCTGAAGCAGGAG
CTGGCCGATAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCAAGGATTT
GGCCATCAAGGTACTGAGCATGACCCTGGACACCACCAAGCTGACCCCGG
AGAAGGTCGAGATGGCCACGCTGCAGCGTGTGGACAATAAGACCGTATAC
AGTGTCCTGGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGTACACAAA
GGTACAGGCGGAGGCCGAGGCTGC
BS11838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9327-PA | 795 | Pros29-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha3-RA | 973 | CG9327-RA | 92..849 | 17..774 | 3790 | 100 | Plus |
Prosalpha3T-RA | 889 | CG1736-RA | 50..526 | 32..511 | 395 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20995446..20995994 | 226..774 | 2745 | 100 | Plus |
2R | 25286936 | 2R | 20995102..20995308 | 19..225 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 31122890..31123119 | 511..282 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:19 has no hits.
BS11838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:44 Download gff for
BS11838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9327-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:51 Download gff for
BS11838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha3-RA | 88..849 | 10..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:35 Download gff for
BS11838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha3-RA | 88..849 | 10..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:35 Download gff for
BS11838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20995097..20995308 | 12..225 | 98 | -> | Plus |
2R | 20995446..20995994 | 226..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:51 Download gff for
BS11838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16882602..16882813 | 12..225 | 98 | -> | Plus |
arm_2R | 16882951..16883499 | 226..774 | 100 | | Plus |
BS11838.complete Sequence
827 bp assembled on 2006-11-01
GenBank Submission: FJ636989
> BS11838.complete
GAAGTTATCAGTCGACATGGCTCGCCGCTATGATTCCCGCACCACGATCT
TCTCGCCGGAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGAGGCCATC
TCGCACGCCGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCATCCTGTT
GGCAGCCGAGTGCCGCAGCACAAACAAATTGCTGGACAGCGCCATTCCTT
CGGAGAAGATCTATCGCCTGAACGACAACATGGTCTGCTCGGTGGCTGGC
ATCACCTCCGATGCCAATGTGCTGACCTCAGAACTGCGTCTGATTGCCCA
GCGTTACCAGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAGCTGGTGT
CGCACCTCTGCGACATCAAACAGGCGTACACTCAGTACGGCGGAAAGCGT
CCCTTCGGCGTCTCGCTGCTCTACATGGGATGGGACAACAAGTACGGCTA
CCAACTGTACCAGTCGGATCCCAGCGGCAACTACGGCGGATGGAAGGCCA
CCTGTATTGGCAACAACTTCGGTGCCGCGATCTCCATGCTGAAGCAGGAG
CTGGCCGATAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCAAGGATTT
GGCCATCAAGGTACTGAGCATGACCCTGGACACCACCAAGCTGACCCCGG
AGAAGGTCGAGATGGCCACGCTGCAGCGTGTGGACAATAAGACCGTATAC
AGTGTCCTGGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGTACACAAA
GGTACAGGCGGAGGCCGAGGCTGCCAAGAAGGAGAAGCAAGCGAAGCAGC
CGACCAAGTAAAAGCTTTCTAGACCAT
BS11838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha3-RA | 795 | CG9327-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Prosalpha3T-RA | 756 | CG1736-PA | 263..492 | 282..511 | 370 | 77.4 | Plus |
Prosalpha3T-RA | 756 | CG1736-PA | 16..137 | 32..153 | 235 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha3-RA | 973 | CG9327-RA | 92..886 | 17..811 | 3975 | 100 | Plus |
Prosalpha3T-RA | 889 | CG1736-RA | 297..526 | 282..511 | 370 | 77.4 | Plus |
Prosalpha3T-RA | 889 | CG1736-RA | 50..171 | 32..153 | 235 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20995446..20996031 | 226..811 | 2930 | 100 | Plus |
2R | 25286936 | 2R | 20995102..20995308 | 19..225 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 31122890..31123119 | 511..282 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:02:42 has no hits.
BS11838.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:05 Download gff for
BS11838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros29-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:08 Download gff for
BS11838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros29-RA | 86..884 | 10..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:37 Download gff for
BS11838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha3-RA | 92..884 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:05 Download gff for
BS11838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros29-RA | 86..884 | 10..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:54 Download gff for
BS11838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha3-RA | 92..884 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:54 Download gff for
BS11838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20995101..20995308 | 17..225 | 99 | -> | Plus |
2R | 20995446..20996029 | 226..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:37 Download gff for
BS11838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16882606..16882813 | 17..225 | 99 | -> | Plus |
arm_2R | 16882951..16883534 | 226..809 | 100 | | Plus |
BS11838.pep Sequence
Translation from 16 to 810
> BS11838.pep
MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECR
STNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFS
YGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQS
DPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVL
SMTLDTTKLTPEKVEMATLQRVDNKTVYSVLEKPDVEKLIEKYTKVQAEA
EAAKKEKQAKQPTK*
BS11838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha3-PA | 264 | CG9327-PA | 1..264 | 1..264 | 1354 | 100 | Plus |
Prosalpha3T-PA | 251 | CG1736-PA | 1..241 | 1..242 | 829 | 64 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 5..230 | 4..231 | 343 | 39.1 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..257 | 335 | 30 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..257 | 335 | 30 | Plus |