Clone Sequence Records
BS11839.5prime Sequence
369 bp (369 high quality bases) assembled on 2006-06-16
> BS11839.5prime
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTTAAAAGCTTTCTAGACC
BS11839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13393-PA | 339 | CG13393-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 526 | CG13393-RA | 126..464 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8383674..8384012 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:45:09 has no hits.
BS11839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:45 Download gff for
BS11839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:49 Download gff for
BS11839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..471 | 7..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:25 Download gff for
BS11839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..471 | 7..360 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:25 Download gff for
BS11839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8383667..8384020 | 7..360 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:49 Download gff for
BS11839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8383667..8384020 | 7..360 | 98 | | Minus |
BS11839.3prime Sequence
369 bp (369 high quality bases) assembled on 2006-06-16
> BS11839.3prime
ATGGTCTAGAAAGCTTTTAACCGATGAAGTTCATGACCACCAGATGAAGG
ATCACATGAGCGAAGATGAAGTCGGCGAAACCGCGTTCCGGCGAAATGCC
GGCAAACACGCTCTTGTTCTGGGGATTGGCCTGCAGGCGTAGGCACACTG
CCAGGACGAAACAGCTGACGGTGCTGATGAAACCAGATAGGAAGGAGTTG
AACGGGAAGGTTCCAACCAGGCAGCAGTAAACAAACTGGATGATGCCGGT
GAGCAGAATGTAGCCGAGGTAGATGTCCACCAGCTTCAGTTTCTTGGGCG
TATTCTGCACGTAGTCGTTGTAGAACTTGGAAATGACGCTCGACAGCTCC
ACCATGTCGACTGATAACT
BS11839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13393-PA | 339 | CG13393-RA | 1..339 | 355..17 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 526 | CG13393-RA | 126..464 | 355..17 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8383674..8384012 | 17..355 | 1695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:44:56 has no hits.
BS11839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:44 Download gff for
BS11839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-PA | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:47 Download gff for
BS11839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..471 | 12..365 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:23 Download gff for
BS11839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 118..471 | 12..365 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:23 Download gff for
BS11839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8383667..8384020 | 12..365 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:47 Download gff for
BS11839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8383667..8384020 | 12..365 | 98 | | Plus |
BS11839.complete Sequence
371 bp assembled on 2007-10-17
GenBank Submission: FJ636990
> BS11839.complete
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTTAAAAGCTTTCTAGACCAT
BS11839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 339 | CG13393-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-RA | 526 | CG13393-RA | 126..464 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8383674..8384012 | 355..17 | 1695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:07:00 has no hits.
BS11839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:27 Download gff for
BS11839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-RA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:18 Download gff for
BS11839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-RA | 113..466 | 7..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:41 Download gff for
BS11839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 126..462 | 17..353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:29 Download gff for
BS11839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13393-RA | 121..457 | 17..353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:14 Download gff for
BS11839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k12914-RA | 126..462 | 17..353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:14 Download gff for
BS11839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8383676..8384012 | 17..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:41 Download gff for
BS11839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8383676..8384012 | 17..353 | 100 | | Minus |
BS11839.pep Sequence
Translation from 16 to 354
> BS11839.pep
MVELSSVISKFYNDYVQNTPKKLKLVDIYLGYILLTGIIQFVYCCLVGTF
PFNSFLSGFISTVSCFVLAVCLRLQANPQNKSVFAGISPERGFADFIFAH
VILHLVVMNFIG*
BS11839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k12914-PA | 112 | CG13393-PA | 1..112 | 1..112 | 578 | 100 | Plus |