Clone BS11839 Report

Search the DGRC for BS11839

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k12914-RA
Protein status:BS11839.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11839.5prime Sequence

369 bp (369 high quality bases) assembled on 2006-06-16

> BS11839.5prime
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTTAAAAGCTTTCTAGACC

BS11839.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13393-PA 339 CG13393-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 526 CG13393-RA 126..464 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8383674..8384012 355..17 1695 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:45:09 has no hits.

BS11839.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:45 Download gff for BS11839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13393-PA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:49 Download gff for BS11839.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..471 7..360 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:25 Download gff for BS11839.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..471 7..360 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:25 Download gff for BS11839.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8383667..8384020 7..360 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:49 Download gff for BS11839.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8383667..8384020 7..360 98   Minus

BS11839.3prime Sequence

369 bp (369 high quality bases) assembled on 2006-06-16

> BS11839.3prime
ATGGTCTAGAAAGCTTTTAACCGATGAAGTTCATGACCACCAGATGAAGG
ATCACATGAGCGAAGATGAAGTCGGCGAAACCGCGTTCCGGCGAAATGCC
GGCAAACACGCTCTTGTTCTGGGGATTGGCCTGCAGGCGTAGGCACACTG
CCAGGACGAAACAGCTGACGGTGCTGATGAAACCAGATAGGAAGGAGTTG
AACGGGAAGGTTCCAACCAGGCAGCAGTAAACAAACTGGATGATGCCGGT
GAGCAGAATGTAGCCGAGGTAGATGTCCACCAGCTTCAGTTTCTTGGGCG
TATTCTGCACGTAGTCGTTGTAGAACTTGGAAATGACGCTCGACAGCTCC
ACCATGTCGACTGATAACT

BS11839.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13393-PA 339 CG13393-RA 1..339 355..17 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 526 CG13393-RA 126..464 355..17 1695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8383674..8384012 17..355 1695 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:44:56 has no hits.

BS11839.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:44 Download gff for BS11839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13393-PA 1..339 17..355 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:47 Download gff for BS11839.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..471 12..365 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:23 Download gff for BS11839.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 118..471 12..365 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:23 Download gff for BS11839.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8383667..8384020 12..365 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:47 Download gff for BS11839.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8383667..8384020 12..365 98   Plus

BS11839.complete Sequence

371 bp assembled on 2007-10-17

GenBank Submission: FJ636990

> BS11839.complete
GAAGTTATCAGTCGACATGGTGGAGCTGTCGAGCGTCATTTCCAAGTTCT
ACAACGACTACGTGCAGAATACGCCCAAGAAACTGAAGCTGGTGGACATC
TACCTCGGCTACATTCTGCTCACCGGCATCATCCAGTTTGTTTACTGCTG
CCTGGTTGGAACCTTCCCGTTCAACTCCTTCCTATCTGGTTTCATCAGCA
CCGTCAGCTGTTTCGTCCTGGCAGTGTGCCTACGCCTGCAGGCCAATCCC
CAGAACAAGAGCGTGTTTGCCGGCATTTCGCCGGAACGCGGTTTCGCCGA
CTTCATCTTCGCTCATGTGATCCTTCATCTGGTGGTCATGAACTTCATCG
GTTAAAAGCTTTCTAGACCAT

BS11839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 339 CG13393-PA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-RA 526 CG13393-RA 126..464 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8383674..8384012 355..17 1695 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:07:00 has no hits.

BS11839.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:27 Download gff for BS11839.complete
Subject Subject Range Query Range Percent Splice Strand
CG13393-RA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:18 Download gff for BS11839.complete
Subject Subject Range Query Range Percent Splice Strand
CG13393-RA 113..466 7..360 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:41 Download gff for BS11839.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 126..462 17..353 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:29 Download gff for BS11839.complete
Subject Subject Range Query Range Percent Splice Strand
CG13393-RA 121..457 17..353 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:14 Download gff for BS11839.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k12914-RA 126..462 17..353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:14 Download gff for BS11839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8383676..8384012 17..353 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:41 Download gff for BS11839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8383676..8384012 17..353 100   Minus

BS11839.pep Sequence

Translation from 16 to 354

> BS11839.pep
MVELSSVISKFYNDYVQNTPKKLKLVDIYLGYILLTGIIQFVYCCLVGTF
PFNSFLSGFISTVSCFVLAVCLRLQANPQNKSVFAGISPERGFADFIFAH
VILHLVVMNFIG*

BS11839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k12914-PA 112 CG13393-PA 1..112 1..112 578 100 Plus