BS11841.complete Sequence
2840 bp assembled on 2009-12-07
GenBank Submission: KX801245
> BS11841.complete
GAAGTTATCAGTCGACATGTTCCACATGTTACCGAGAAATCATCTGTCAG
TAATGGCTCTCCAACGGCGATCGGCGTCTCTGGGTCTGCTCACCTTGATA
TTGGCCTCCTCGCTGGCGGCATCCACAGCGCAGGTCTCGGTAAGATCGGG
CAGATCTCCACTGCCCGCCCAACCGGCGGATCACCTGGTGCCGCCACCAC
TGCCCGTTCCCCAGAGACTATCGCACGCCGGTGCGGGTTCTCCAGCGCCT
CCTCCATCCTCTGCACCCGTTGCCGTTCCCGAAGCCGGCTTCATGACCCG
CGTGGCCAGGTGGTTCGGCTTGGCTGGCGGCCAGTCGTCCAAGGATCAGC
AGCTGAGTGCCACCAATTCGTTGAGCTATGCCTATCCGAAACCAGTTTCC
GGCTTCGACGCGGGTGGCAAGCCGTGCAGCCTGTGCAACAAGTATCCTTG
GGTGCCAATGGTGGGCCAGCAGCAGCAGCAGCAGCAGCCGAATCCTCAGC
AACTGAACAACCAACTGCAACAGCATCACCATCATGCGCAGCAGCTGCAA
GTGCAGCAGCAACAACTGCAGCACATCCCGCAACAGAAGCAGCAACAACC
TCACCACATACCACAACAGCAGCAACAACTGCAGCATATTCCGCAGCAGC
AGCAGCAGCAGCAACCCGTCCCGCAGCAACACGCAACATGGCAGCTGCAG
CAGCCGTTGGCTCAGGCCTCGCAGCAACGCCAGCGGGCTGTGCAATTCCG
TCCCAGCTCCGGACAGAGTGTCTTCCTGCCCCTGGCGGTGCCACTGCCTC
CGCTGTACAATGCCCAGCCATTCCGGCCTGTTGTACAACCGCTGGTCAAG
GAGAACGTAGTGGCCCAGTCGGAAGTGAGACCCGTGCCGGTTTCCCTGCC
CCTACCAACTCCTGCTCCGCCAGCCAGCACCTCCAGCTTCGAGATCGTGC
AGAGCCACCAGGTGACGGACTTTGTGACGTCCGTGGAATACCCAGCCACG
TTCGTGCAGTCCCATGCCATCGATCTCGGCTCTAGCGGATCTGCGGCCAG
CCAAAGGCCAAGTCATGAGTTGGCTTTGGAGCAGGAACTTCAGGCGGATA
TCAGTACGGTGCGCTACCAGCTGGAGGATCTGAGCAGTGGTCAGGTGCAT
CAGCATTTGCCAGCCTCGCAGTTGCTAACGGAGATCGGACATTTCGCTGA
AACCACCACGCAGCCACCGCCGGCGGATAACTATCCAGCGGCCTCGTCGC
AACAGCAATTGGAGCAGGAGCAGGAACAGGAGCAGGAGCAACCCTTCTAC
TATGCGGAGCAGTTTCAGGATGAAACCAGCACACTGTTATATAGCACCAG
CACGGAGTTGCCCACCACAACAGCACCGCCACCGCCACCACCGGCGCCGG
TCATTGAGCTGAATAACCATCTGGCTGCAGTGCATCACTCGCACCGTCAG
GGAATCGGTAGGGGCAGGGAAACGCCAAAGCGTCTGCTTGACTCGCCCAT
CAACCACGCCCCCTTGGCGGGAGCCGGAGGACGGCCCTTCACCCGCGATC
CAGCCGATCTTAATTTCCGAGTAAGCCAGGTGTACACGCCCACGCAGCCA
CCAACGCCCACGTCCACGTACGGTGCGATCGATGCCAGTGGACAGTTTGC
TGGTATGTCACCACCGAGTCCGCAGCAGGTGATCATACCCTACACCACCA
AGCAGCGACCACGGCCCTTCGAGAGCTGGACGCCCTTGAAACAGCACCCT
CAACATCAACTACACCATCAGCCGAATCACCATCACAATCACCACAACCA
CCAAAGCAACGACCTCGAGGAGGAGCCACACGAGCAGCAGGAATCGAAGC
TGGCTACAGCCACCGTGACGGCGCCACCTAATTCGCGACGCACCACCAAA
TACCTGACCAAAATCCTGGCCACCAATCTGAGGGAGTTGCTCAAGCGGGA
GAGGGAAACGAAGCGGCTGCCTGGTCAGGGATTGGGTGTGGACATATCCC
GGCTGCAGAAGAACATCGATGGCTGGACGGAGCAGGAGTACAACTCGCTG
TCGCATCGACCCAGCACACCCACGATTCGAGGAAGATCCAAGCACATACC
GTCCGAGTATCTGACCACCACTACCACAACTCCAGCGCCGTTATCGCAGC
GCCAGTCGAAAACCACTCGGGGCGAGGGATTCGAGCTGGGTGGCGCTCCA
CCCACTGATGCCGGTGATCTGTCCACTTCCATCAACAATCTGGAGCAACT
GCATCTGCTCGGTGAGCGGGGATCGAAGGGCTTTCAGCCCATCGAAGACA
ACCGCCTGCATTTCGACTACTACGATGCCCAACAGCGACCAAGATCCACG
TCGGCCATGACCACCATCAGTCCGCCCAGCACCACAACCACCACCAATAC
ACCGCCCACCACAACGACAACGGTGGTGACACCACTCTACGTGCGCAGCA
CTCCGGCGCCCAAAGAGCTGTGGAAACAGGCCCAGGTGGCCATCCTGCCG
CAGACCAACGAGAAGGTGTACGTGGTTACGCCACAGCCACGGCATCAGGA
GCACCACCCGGCGGAGCATCGGGATCGCCATGTGGCCTCCGCCTCGGCGC
CCAGGCCTGTTTACCAAACGCCAGCGCCGCGGTTTCCACGGATGCGACCA
ACTCCAGCAGGCGAAGTGAAGTCGGCCACGCCCACCAGCTCGTCGCAGCT
GCGCAACTATACGCCGGACATTTTCGGGCTGATGGGACTGTCCGCCTATG
TGCCCGCAGAGCCCGTGGAGATAATCGACGGAAACTCCAAAGTAAATCGC
AACTCACCTCGTCTAGACATGTAAAAGCTTTCTAGACCAT
BS11841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7884-RA | 2808 | CG7884-PA | 1..2808 | 17..2824 | 14040 | 100 | Plus |
| CG7884-RB | 2859 | CG7884-PB | 1..2774 | 17..2793 | 13805 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7884-RA | 3960 | CG7884-RA | 409..3216 | 17..2824 | 14040 | 100 | Plus |
| CG7884-RB | 3777 | CG7884-RB | 409..3182 | 17..2793 | 13805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19232268..19234870 | 55..2657 | 13015 | 100 | Plus |
| X | 23542271 | X | 19234998..19235166 | 2656..2824 | 845 | 100 | Plus |
| X | 23542271 | X | 19221030..19221069 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3391 | 470..618 | 238 | 65.4 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 513..645 | 476..605 | 153 | 59.4 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4589..4641 | 1737..1789 | 130 | 71.7 | Plus |
BS11841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:53 Download gff for
BS11841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7884-RA | 412..3212 | 22..2822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:49 Download gff for
BS11841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7884-RA | 414..3214 | 22..2822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:52 Download gff for
BS11841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7884-RA | 412..3212 | 22..2822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:58 Download gff for
BS11841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7884-RA | 414..3214 | 22..2822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:58 Download gff for
BS11841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19221035..19221068 | 22..55 | 100 | -> | Plus |
| X | 19232269..19234870 | 56..2657 | 100 | -> | Plus |
| X | 19235000..19235164 | 2658..2822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:49 Download gff for
BS11841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19115068..19115101 | 22..55 | 100 | -> | Plus |
| arm_X | 19126302..19128903 | 56..2657 | 100 | -> | Plus |
| arm_X | 19129033..19129197 | 2658..2822 | 100 | | Plus |
BS11841.pep Sequence
Translation from 16 to 2823
> BS11841.pep
MFHMLPRNHLSVMALQRRSASLGLLTLILASSLAASTAQVSVRSGRSPLP
AQPADHLVPPPLPVPQRLSHAGAGSPAPPPSSAPVAVPEAGFMTRVARWF
GLAGGQSSKDQQLSATNSLSYAYPKPVSGFDAGGKPCSLCNKYPWVPMVG
QQQQQQQPNPQQLNNQLQQHHHHAQQLQVQQQQLQHIPQQKQQQPHHIPQ
QQQQLQHIPQQQQQQQPVPQQHATWQLQQPLAQASQQRQRAVQFRPSSGQ
SVFLPLAVPLPPLYNAQPFRPVVQPLVKENVVAQSEVRPVPVSLPLPTPA
PPASTSSFEIVQSHQVTDFVTSVEYPATFVQSHAIDLGSSGSAASQRPSH
ELALEQELQADISTVRYQLEDLSSGQVHQHLPASQLLTEIGHFAETTTQP
PPADNYPAASSQQQLEQEQEQEQEQPFYYAEQFQDETSTLLYSTSTELPT
TTAPPPPPPAPVIELNNHLAAVHHSHRQGIGRGRETPKRLLDSPINHAPL
AGAGGRPFTRDPADLNFRVSQVYTPTQPPTPTSTYGAIDASGQFAGMSPP
SPQQVIIPYTTKQRPRPFESWTPLKQHPQHQLHHQPNHHHNHHNHQSNDL
EEEPHEQQESKLATATVTAPPNSRRTTKYLTKILATNLRELLKRERETKR
LPGQGLGVDISRLQKNIDGWTEQEYNSLSHRPSTPTIRGRSKHIPSEYLT
TTTTTPAPLSQRQSKTTRGEGFELGGAPPTDAGDLSTSINNLEQLHLLGE
RGSKGFQPIEDNRLHFDYYDAQQRPRSTSAMTTISPPSTTTTTNTPPTTT
TTVVTPLYVRSTPAPKELWKQAQVAILPQTNEKVYVVTPQPRHQEHHPAE
HRDRHVASASAPRPVYQTPAPRFPRMRPTPAGEVKSATPTSSSQLRNYTP
DIFGLMGLSAYVPAEPVEIIDGNSKVNRNSPRLDM*
BS11841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7884-PA | 935 | CG7884-PA | 1..935 | 1..935 | 4934 | 100 | Plus |
| CG7884-PB | 952 | CG7884-PB | 1..926 | 1..927 | 4876 | 99.9 | Plus |
| CG44085-PP | 2246 | CG44085-PP | 210..759 | 41..602 | 216 | 25.5 | Plus |
| CG43347-PD | 2652 | CG43347-PD | 1470..1603 | 110..243 | 214 | 45.3 | Plus |
| CG43347-PB | 2666 | CG43347-PB | 1484..1617 | 110..243 | 214 | 45.3 | Plus |
