BS11842.complete Sequence
2102 bp assembled on 2009-12-07
GenBank Submission: KX805679
> BS11842.complete
GAAGTTATCAGTCGACATGGCATTGAGCAGCAGAGTTCTTTGTCTGCGAT
TGCAGCACCATTTATTACTGGTTATTTTAACGATTTTCCTGCTTTGCCCC
GCCGCCTCGGCCCAGAACGAAGAAGAAGATGGTCCGTACCGGGGAAAATA
TCTGGGGAAACTGAACTCCTACCATCATCAAGTGTCCGGCGATGTGTACG
CTGTGAATGAGTACACCTTTCTGATTGTGGGCTTTAACTACGATGGCAAC
GGGGCGGATACGTTTTTCTGGTCGGGCGCTAGTAATCGGCCGGGACCGCA
GGGATTCATTGTGCCCGATGAGTATGGCAAAACCAACATTCTGGATCGCT
ATCACAACAAGGATTTCACGCTGACGCTGCCGGATCGAAAGAAGATAACT
GAGATTAAATGGCTGGCGGTTTACGATCTGAGCAGTCAAAACAACTTTGG
CGACGTTTATATACCCGAGGAGTTCGATCCACCGATGAGCCAATTGGGCG
GAACCTTCTCCAAGCGCAGTCACAATGTGAGCAGCAGCAGTGTTGAGATC
TTGGACTCAAAGACCATTCGCATCAAGGACTTTACCTACGATGGGCGTGG
CAAGAGGACATTTTTCTGGACAGGAGTCGGGCCACAGCCATCGAGTCGAG
GAAGCAAGCTGCCAGATGAGCGAGGATACCTTGATCCTATAAGACAGTAC
AACAAGGAGACCATAGAACTGGAACTGCCAGGAGATAAGACTATCTTTGA
CATCGATTGGATCAGTGTATACGATGTGGCTGACAACGAGAACTATGGTC
ATGTTCTGTTCAACGATAAACTTAATGTTCCACCTTCCCTAGTGAAAGTT
ACACCATTCGAATTCTCGCTGCCCAATTGCCGGCAACTACACAAGGATAT
GCAGGTGTCCTGGGAGGTTTTCGGGCCGCAGATCACGTTTCAACTATCCG
GTCAGGTGGGCGGCAACGATTATATGTCTTTCGGCATATCCGGATCTGAT
GTATCCAGCCAGATGATTGGCTCCGATGTCGTGGTGGCCTATATAGACGA
CATCAGAGGCTACACCGTGGACTACAATATCACTTCGTTAGCGCCGTGCG
TTCAGGTTTTGGGTCAAAACAAAGGAGTTTGCCGTGACGATGTGGTTGGT
GGATTGGACAGCTTCCAGTTGAATACGTATAGTCGCAAGGATGGCATTAA
TACGATCAGTTTTAGGCGGACGCTCAAGTCATCCGATGATGGCGATAAGG
AGATCTTCCTAGACCGCAGCAACTACGTGATCTGGGCATTTGGCCCATTG
GACTCCAACAACGAGCCCGCCTTTCACACTTACTATCCCAAGAGCGATAT
AGTGATAGATTTTAACACCACAGAACCGGTTAATGATTGCTTTGCATTTA
CAAAACGAGCGGAGACGACTAATCCTCCAGTGTGGGAGCGAACCAGGATA
ACAGATGCAACGGTACGCACATTCAACGCCTACTTGGGACCCTCTGGAGG
ACTTCGTGGCTATCAGGGATTGACGAATCATGTGTCCAGTGGCTTGGCCT
GGTACATCAACGGCTACATGATTCCAGAGCTTTACCTAAAGCGTGGTCTG
ACCTACACCTTTAAGGTTAGGGGTGGCAATAATCCTCACTCGCCGGAGCA
CTATCATCCGTTGGTTATCACCGATGATCCCCAGGGTGGGTATGACCGAC
TGTCTGATGCAAAGCAGAGTGAGATTCGTGTATTAGCCGGTGTTGAATTC
ACCCGGAGAGGCAGGCCCAAGCCCACGGCTGCTGGTCCCCTGTGCCTGTC
CAGATATCCTCAAAATAGTGATCGTCGACTGGATGATAACTTCCCCACTT
TCAAGAAGTTCAATCGATCCCTCATCACCGAGTGTGTAGAAGGGGAACCG
GCTCTATTGGAAATTACACCGAATATCACATGGCCGGATACTGTGTACTA
CAACTCCTTTACCCATGGCAATATGGGCTGGAAGATTCACATCGTGGACA
GTTATACCAACTTGAAGAGTGGATCGATGGGCTTATCCTGGTCCTTGTGC
ATCATCCTGCTACCGTGGCTCGTGCTCCAGAACTGAAAGCTTTCTAGACC
AT
BS11842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2070 | CG6217-PA | 1..2070 | 17..2086 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2674 | CG6217-RA | 446..2515 | 17..2086 | 10350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10122524..10123151 | 2086..1459 | 3140 | 100 | Minus |
| 3R | 32079331 | 3R | 10123494..10124047 | 1232..679 | 2770 | 100 | Minus |
| 3R | 32079331 | 3R | 10124120..10124467 | 678..331 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 10123206..10123431 | 1458..1233 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 10124542..10124764 | 330..108 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 10125129..10125219 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:12:28 has no hits.
BS11842.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:55 Download gff for
BS11842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 443..2511 | 17..2085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:40 Download gff for
BS11842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..2514 | 17..2085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:23 Download gff for
BS11842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 443..2511 | 17..2085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:21 Download gff for
BS11842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..2514 | 17..2085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:21 Download gff for
BS11842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10124542..10124764 | 108..330 | 100 | <- | Minus |
| 3R | 10125129..10125219 | 17..107 | 100 | | Minus |
| 3R | 10122525..10123151 | 1459..2085 | 100 | <- | Minus |
| 3R | 10123206..10123431 | 1233..1458 | 100 | <- | Minus |
| 3R | 10123494..10124047 | 679..1232 | 100 | <- | Minus |
| 3R | 10124120..10124467 | 331..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:40 Download gff for
BS11842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5948928..5949153 | 1233..1458 | 100 | <- | Minus |
| arm_3R | 5948247..5948873 | 1459..2085 | 100 | <- | Minus |
| arm_3R | 5949216..5949769 | 679..1232 | 100 | <- | Minus |
| arm_3R | 5949842..5950189 | 331..678 | 100 | <- | Minus |
| arm_3R | 5950264..5950486 | 108..330 | 100 | <- | Minus |
| arm_3R | 5950851..5950941 | 17..107 | 100 | | Minus |
BS11842.pep Sequence
Translation from 16 to 2085
> BS11842.pep
MALSSRVLCLRLQHHLLLVILTIFLLCPAASAQNEEEDGPYRGKYLGKLN
SYHHQVSGDVYAVNEYTFLIVGFNYDGNGADTFFWSGASNRPGPQGFIVP
DEYGKTNILDRYHNKDFTLTLPDRKKITEIKWLAVYDLSSQNNFGDVYIP
EEFDPPMSQLGGTFSKRSHNVSSSSVEILDSKTIRIKDFTYDGRGKRTFF
WTGVGPQPSSRGSKLPDERGYLDPIRQYNKETIELELPGDKTIFDIDWIS
VYDVADNENYGHVLFNDKLNVPPSLVKVTPFEFSLPNCRQLHKDMQVSWE
VFGPQITFQLSGQVGGNDYMSFGISGSDVSSQMIGSDVVVAYIDDIRGYT
VDYNITSLAPCVQVLGQNKGVCRDDVVGGLDSFQLNTYSRKDGINTISFR
RTLKSSDDGDKEIFLDRSNYVIWAFGPLDSNNEPAFHTYYPKSDIVIDFN
TTEPVNDCFAFTKRAETTNPPVWERTRITDATVRTFNAYLGPSGGLRGYQ
GLTNHVSSGLAWYINGYMIPELYLKRGLTYTFKVRGGNNPHSPEHYHPLV
ITDDPQGGYDRLSDAKQSEIRVLAGVEFTRRGRPKPTAAGPLCLSRYPQN
SDRRLDDNFPTFKKFNRSLITECVEGEPALLEITPNITWPDTVYYNSFTH
GNMGWKIHIVDSYTNLKSGSMGLSWSLCIILLPWLVLQN*
BS11842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-PA | 689 | CG6217-PA | 1..689 | 1..689 | 3711 | 100 | Plus |
| CG34355-PE | 755 | CG34355-PE | 58..717 | 17..661 | 1122 | 35.9 | Plus |
| CG34355-PF | 748 | CG34355-PF | 58..710 | 17..661 | 1121 | 36.1 | Plus |
| CG34355-PB | 748 | CG34355-PB | 58..710 | 17..661 | 1121 | 36.1 | Plus |
| Skeletor-PC | 784 | CG14681-PB | 1..442 | 7..449 | 706 | 38 | Plus |
