Clone BS11843 Report

Search the DGRC for BS11843

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG17361-RA
Protein status:BS11843.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11843.3prime Sequence

663 bp (663 high quality bases) assembled on 2006-06-16

> BS11843.3prime
ATGGTCTAGAAAGCTTCTATTTAAGAGCTTTTCGTCTGGTCCTTGTGGAT
CCTTTGGTGTGGGTGCGCCTGTGCATGGTCAACTGGGCCTTGCCGGTGAA
ACTTTTTTGGCAGTCGGTGCATTTGAAGGGCCGCCTCTTATCCACCTCGT
TGCGAGTCTCCTTCTTCGGCTGCTTATCGTTCCGGTCCCCATCGTCCTCC
TCCTCCTCCTCCTCGCTCTTGATGCGATCCGTAAAATCCCAATCCTCGGC
CTCCAGGAGATCGCATGTCTCCTTGTCGCTTTGCTCCCTCTTCACGCGCG
CCACGTATTCCATGGTCCTTGTGTAGCGTCTCCTGAATCTCAAGGCCTCA
CGCAATTTAATAAGGCACGGTTCGCAAATTTTCAGCGGAAAGCCGTCCCC
GGTATCCACTGGATATGCGCTGCAGATATTCAGCAAATCAGCCGGCGTGG
GCTCCGGTTCCTTGGTTCGCTGTAGATCGTCGCTCAGTCTGTCCCCCAAG
CTCTTGTTGTCGTAGATGTCTAGCAGGTCCTTCGGCTCGTCCATACACAC
CCGGCACATCTTCACCAATTCATCCATGGCTTCGTTGCTTCCTTCGATTC
CAAGCAAATACAATTCAAAAAGAATAACTAAACTGTATCGGATGACCATG
TCGACTGATAACT

BS11843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17361-PA 633 CG17361-RA 1..633 649..17 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17361-RA 865 CG17361-RA 16..648 649..17 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13997206..13997838 649..17 3165 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:05:57 has no hits.

BS11843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:45 Download gff for BS11843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17361-PA 1..633 17..649 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:56 Download gff for BS11843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 16..653 11..649 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:28 Download gff for BS11843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 16..653 11..649 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:28 Download gff for BS11843.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13997206..13997843 11..649 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:56 Download gff for BS11843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13990306..13990943 11..649 99   Minus

BS11843.5prime Sequence

663 bp (663 high quality bases) assembled on 2006-06-16

> BS11843.5prime
GAAGTTATCAGTCGACATGGTCATCCGATACAGTTTAGTTATTCTTTTTG
AATTGTATTTGCTTGGAATCGAAGGAAGCAACGAAGCCATGGATGAATTG
GTGAAGATGTGCCGGGTGTGTATGGACGAGCCGAAGGACCTGCTAGACAT
CTACGACAACAAGAGCTTGGGGGACAGACTGAGCGACGATCTACAGCGAA
CCAAGGAACCGGAGCCCACGCCGGCTGATTTGCTGAATATCTGCAGCGCA
TATCCAGTGGATACCGGGGACGGCTTTCCGCTGAAAATTTGCGAACCGTG
CCTTATTAAATTGCGTGAGGCCTTGAGATTCAGGAGACGCTACACAAGGA
CCATGGAATACGTGGCGCGCGTGAAGAGGGAGCAAAGCGACAAGGAGACA
TGCGATCTCCTGGAGGCCGAGGATTGGGATTTTACGGATCGCATCAAGAG
CGAGGAGGAGGAGGAGGAGGACGATGGGGACCGGAACGATAAGCAGCCGA
AGAAGGAGACTCGCAACGAGGTGGATAAGAGGCGGCCCTTCAAATGCACC
GACTGCCAAAAAAGTTTCACCGGCAAGGCCCAGTTGACCATGCACAGGCG
CACCCACACCAAAGGATCCACAAGGACCAGACGAAAAGCTCTTAAATAGA
AGCTTTCTAGACC

BS11843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17361-PA 633 CG17361-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17361-RA 865 CG17361-RA 16..648 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13997206..13997838 17..649 3165 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:06:58 has no hits.

BS11843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:45 Download gff for BS11843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17361-PA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:03 Download gff for BS11843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 16..653 17..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:07 Download gff for BS11843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 16..653 17..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:07 Download gff for BS11843.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13997206..13997843 17..655 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:03 Download gff for BS11843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13990306..13990943 17..655 99   Plus

BS11843.complete Sequence

665 bp assembled on 2006-11-01

GenBank Submission: FJ636991

> BS11843.complete
GAAGTTATCAGTCGACATGGTCATCCGATACAGTTTAGTTATTCTTTTTG
AATTGTATTTGCTTGGAATCGAAGGAAGCAACGAAGCCATGGATGAATTG
GTGAAGATGTGCCGGGTGTGTATGGACGAGCCGAAGGACCTGCTAGACAT
CTACGACAACAAGAGCTTGGGGGACAGACTGAGCGACGATCTACAGCGAA
CCAAGGAACCGGAGCCCACGCCGGCTGATTTGCTGAATATCTGCAGCGCA
TATCCAGTGGATACCGGGGACGGCTTTCCGCTGAAAATTTGCGAACCGTG
CCTTATTAAATTGCGTGAGGCCTTGAGATTCAGGAGACGCTACACAAGGA
CCATGGAATACGTGGCGCGCGTGAAGAGGGAGCAAAGCGACAAGGAGACA
TGCGATCTCCTGGAGGCCGAGGATTGGGATTTTACGGATCGCATCAAGAG
CGAGGAGGAGGAGGAGGAGGACGATGGGGACCGGAACGATAAGCAGCCGA
AGAAGGAGACTCGCAACGAGGTGGATAAGAGGCGGCCCTTCAAATGCACC
GACTGCCAAAAAAGTTTCACCGGCAAGGCCCAGTTGACCATGCACAGGCG
CACCCACACCAAAGGATCCACAAGGACCAGACGAAAAGCTCTTAAATAGA
AGCTTTCTAGACCAT

BS11843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17361-RA 633 CG17361-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17361-RA 865 CG17361-RA 16..648 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13997206..13997838 17..649 3165 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:23:43 has no hits.

BS11843.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:07 Download gff for BS11843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:10 Download gff for BS11843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 14..651 17..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:38:54 Download gff for BS11843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 16..642 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:08 Download gff for BS11843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 14..651 17..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:30 Download gff for BS11843.complete
Subject Subject Range Query Range Percent Splice Strand
CG17361-RA 16..642 17..643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:30 Download gff for BS11843.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13997206..13997832 17..643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:38:54 Download gff for BS11843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13990306..13990932 17..643 100   Plus

BS11843.pep Sequence

Translation from 16 to 648

> BS11843.pep
MVIRYSLVILFELYLLGIEGSNEAMDELVKMCRVCMDEPKDLLDIYDNKS
LGDRLSDDLQRTKEPEPTPADLLNICSAYPVDTGDGFPLKICEPCLIKLR
EALRFRRRYTRTMEYVARVKREQSDKETCDLLEAEDWDFTDRIKSEEEEE
EDDGDRNDKQPKKETRNEVDKRRPFKCTDCQKSFTGKAQLTMHRRTHTKG
STRTRRKALK*

BS11843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17361-PA 210 CG17361-PA 1..210 1..210 1111 100 Plus
CG15436-PA 346 CG15436-PA 1..153 28..202 190 27.4 Plus
CG17359-PA 339 CG17359-PA 2..101 27..129 146 34.9 Plus