Clone Sequence Records
BS11843.3prime Sequence
663 bp (663 high quality bases) assembled on 2006-06-16
> BS11843.3prime
ATGGTCTAGAAAGCTTCTATTTAAGAGCTTTTCGTCTGGTCCTTGTGGAT
CCTTTGGTGTGGGTGCGCCTGTGCATGGTCAACTGGGCCTTGCCGGTGAA
ACTTTTTTGGCAGTCGGTGCATTTGAAGGGCCGCCTCTTATCCACCTCGT
TGCGAGTCTCCTTCTTCGGCTGCTTATCGTTCCGGTCCCCATCGTCCTCC
TCCTCCTCCTCCTCGCTCTTGATGCGATCCGTAAAATCCCAATCCTCGGC
CTCCAGGAGATCGCATGTCTCCTTGTCGCTTTGCTCCCTCTTCACGCGCG
CCACGTATTCCATGGTCCTTGTGTAGCGTCTCCTGAATCTCAAGGCCTCA
CGCAATTTAATAAGGCACGGTTCGCAAATTTTCAGCGGAAAGCCGTCCCC
GGTATCCACTGGATATGCGCTGCAGATATTCAGCAAATCAGCCGGCGTGG
GCTCCGGTTCCTTGGTTCGCTGTAGATCGTCGCTCAGTCTGTCCCCCAAG
CTCTTGTTGTCGTAGATGTCTAGCAGGTCCTTCGGCTCGTCCATACACAC
CCGGCACATCTTCACCAATTCATCCATGGCTTCGTTGCTTCCTTCGATTC
CAAGCAAATACAATTCAAAAAGAATAACTAAACTGTATCGGATGACCATG
TCGACTGATAACT
BS11843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17361-PA | 633 | CG17361-RA | 1..633 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17361-RA | 865 | CG17361-RA | 16..648 | 649..17 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13997206..13997838 | 649..17 | 3165 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:05:57 has no hits.
BS11843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:45 Download gff for
BS11843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:56 Download gff for
BS11843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 16..653 | 11..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:28 Download gff for
BS11843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 16..653 | 11..649 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:28 Download gff for
BS11843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13997206..13997843 | 11..649 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:56 Download gff for
BS11843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13990306..13990943 | 11..649 | 99 | | Minus |
BS11843.5prime Sequence
663 bp (663 high quality bases) assembled on 2006-06-16
> BS11843.5prime
GAAGTTATCAGTCGACATGGTCATCCGATACAGTTTAGTTATTCTTTTTG
AATTGTATTTGCTTGGAATCGAAGGAAGCAACGAAGCCATGGATGAATTG
GTGAAGATGTGCCGGGTGTGTATGGACGAGCCGAAGGACCTGCTAGACAT
CTACGACAACAAGAGCTTGGGGGACAGACTGAGCGACGATCTACAGCGAA
CCAAGGAACCGGAGCCCACGCCGGCTGATTTGCTGAATATCTGCAGCGCA
TATCCAGTGGATACCGGGGACGGCTTTCCGCTGAAAATTTGCGAACCGTG
CCTTATTAAATTGCGTGAGGCCTTGAGATTCAGGAGACGCTACACAAGGA
CCATGGAATACGTGGCGCGCGTGAAGAGGGAGCAAAGCGACAAGGAGACA
TGCGATCTCCTGGAGGCCGAGGATTGGGATTTTACGGATCGCATCAAGAG
CGAGGAGGAGGAGGAGGAGGACGATGGGGACCGGAACGATAAGCAGCCGA
AGAAGGAGACTCGCAACGAGGTGGATAAGAGGCGGCCCTTCAAATGCACC
GACTGCCAAAAAAGTTTCACCGGCAAGGCCCAGTTGACCATGCACAGGCG
CACCCACACCAAAGGATCCACAAGGACCAGACGAAAAGCTCTTAAATAGA
AGCTTTCTAGACC
BS11843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17361-PA | 633 | CG17361-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17361-RA | 865 | CG17361-RA | 16..648 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13997206..13997838 | 17..649 | 3165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:06:58 has no hits.
BS11843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:45 Download gff for
BS11843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:03 Download gff for
BS11843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 16..653 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:07 Download gff for
BS11843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 16..653 | 17..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:07 Download gff for
BS11843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13997206..13997843 | 17..655 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:03 Download gff for
BS11843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13990306..13990943 | 17..655 | 99 | | Plus |
BS11843.complete Sequence
665 bp assembled on 2006-11-01
GenBank Submission: FJ636991
> BS11843.complete
GAAGTTATCAGTCGACATGGTCATCCGATACAGTTTAGTTATTCTTTTTG
AATTGTATTTGCTTGGAATCGAAGGAAGCAACGAAGCCATGGATGAATTG
GTGAAGATGTGCCGGGTGTGTATGGACGAGCCGAAGGACCTGCTAGACAT
CTACGACAACAAGAGCTTGGGGGACAGACTGAGCGACGATCTACAGCGAA
CCAAGGAACCGGAGCCCACGCCGGCTGATTTGCTGAATATCTGCAGCGCA
TATCCAGTGGATACCGGGGACGGCTTTCCGCTGAAAATTTGCGAACCGTG
CCTTATTAAATTGCGTGAGGCCTTGAGATTCAGGAGACGCTACACAAGGA
CCATGGAATACGTGGCGCGCGTGAAGAGGGAGCAAAGCGACAAGGAGACA
TGCGATCTCCTGGAGGCCGAGGATTGGGATTTTACGGATCGCATCAAGAG
CGAGGAGGAGGAGGAGGAGGACGATGGGGACCGGAACGATAAGCAGCCGA
AGAAGGAGACTCGCAACGAGGTGGATAAGAGGCGGCCCTTCAAATGCACC
GACTGCCAAAAAAGTTTCACCGGCAAGGCCCAGTTGACCATGCACAGGCG
CACCCACACCAAAGGATCCACAAGGACCAGACGAAAAGCTCTTAAATAGA
AGCTTTCTAGACCAT
BS11843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17361-RA | 633 | CG17361-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17361-RA | 865 | CG17361-RA | 16..648 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13997206..13997838 | 17..649 | 3165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:23:43 has no hits.
BS11843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:07 Download gff for
BS11843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:10 Download gff for
BS11843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 14..651 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:38:54 Download gff for
BS11843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 16..642 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:08 Download gff for
BS11843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 14..651 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:30 Download gff for
BS11843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17361-RA | 16..642 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:30 Download gff for
BS11843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13997206..13997832 | 17..643 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:38:54 Download gff for
BS11843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13990306..13990932 | 17..643 | 100 | | Plus |
BS11843.pep Sequence
Translation from 16 to 648
> BS11843.pep
MVIRYSLVILFELYLLGIEGSNEAMDELVKMCRVCMDEPKDLLDIYDNKS
LGDRLSDDLQRTKEPEPTPADLLNICSAYPVDTGDGFPLKICEPCLIKLR
EALRFRRRYTRTMEYVARVKREQSDKETCDLLEAEDWDFTDRIKSEEEEE
EDDGDRNDKQPKKETRNEVDKRRPFKCTDCQKSFTGKAQLTMHRRTHTKG
STRTRRKALK*
BS11843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17361-PA | 210 | CG17361-PA | 1..210 | 1..210 | 1111 | 100 | Plus |
CG15436-PA | 346 | CG15436-PA | 1..153 | 28..202 | 190 | 27.4 | Plus |
CG17359-PA | 339 | CG17359-PA | 2..101 | 27..129 | 146 | 34.9 | Plus |