BS11844.complete Sequence
1556 bp assembled on 2007-10-17
GenBank Submission: FJ636992
> BS11844.complete
GAAGTTATCAGTCGACATGCAGCTGACATACTTTCTCTTCCAAGTGGCAG
TCGCCCTACTGGCGATCGTGACCTATATACTCCATCGCAAACTAACGTAT
TTTAAGAGGCGTGGCATTCCGTATGATAAACCCCATCCTCTCAGAGGAAA
TATGGAGGGATATAAGAAAACGAGGACCGTTCACGAAATCCACCAGGAAT
ACTACAACAAATATCGAAATAGCAAGGCTCCTTTTGTGGGATTCTATCTG
TTTCAGAAGCCCGCCGCATTTGTTATAGATCTGGAGCTGGCCAAGCAAAT
ACTGATCAAGAACTTTTCCAATTTCACCGACAAGGGAATATACTACAACG
AGAAAGATGATCCCATGTCAGCGCATCTCTTTAATTTGGATGGACCCCAG
TGGCGTTTGCTTAGGAGCAAACTATCCTCGACATTCACGTCGGGCAAAAT
GAAGTTCATGTATCCGACGGTTGTGTCCGTGGCTGAGGAATTTATGGCTG
TGATGCACGAGAAGGTATCGGAAAACTCCATATTGGACGTTCGGGATCTG
GTGGCCAGGTTCACAGTGGATGTCATCGGAACCTGTGCCTTTGGCATCAA
ATGTAATAGTCTGCGAGATGAGAAGGCCGAGTTTTTGCACTTTGGCAGGC
GGGCTTTGCTGGATTCTCGTCATGGTAATCTAGTAAGTGGCCTCATGCGC
AGCTATCCCAATTTGGCCAGGCGACTGGGCCTTTGCCGAAACACGGCTCA
AATTCAGGAGTTCTATCAAAGAATAGTTAAAGAGACTGTCACTTTGCGAG
AAAAGGAGAATATAAAACGGAATGATTTCATGGATATGCTAATCGGCTTG
AAAAACCAGAAGAATATGACTCTTGAAAATGGGGAGGTTGTTAAGGGCCT
AACCATGGATGAGATCGTTGCCCAAGCTTTTGTGTTCTTCATCGCTGGCT
TTGATACCTCATCCTCCACCATGGGATTTGCCCTCTACGAGCTGGCCAAG
AATCCGAGTATCCAGGATAAGGTGAGAGCTGAGTTGGGGCAGGTTCTGGA
GCAACACGATCAAAAGTTTACCTACGAGTGCATCAAGGATCTAAAGTACC
TCGACCAAGTTATAAATGAAACTCTACGCCATTATACCATTGTACCGAAT
GTGGATCGAGTGGCCGCCAAACGTTTTGTGGTTCCGGGCAATCCCAAATT
TGTCATCGAGGCTGGACAGTCGGTCATTATTCCATCATCGGCCATACATC
ACGATCCCAGTATTTATCCCGAACCCAATGAGTTTCGACCGGAGAGGTTT
TCTCCAGAAGAATCCGCCAAACGTCCCTCGGTTGCCTGGCTTCCCTTCGG
AGAAGGTCCTCGCAACTGCATTGGACTGAGATTTGGACAGATGCAGGCTC
GTATTGGACTAGCCATGCTCATTAAGAACTTCACATTCTCCCCATGCTCA
GCGACACCAGATCCCTTGACCTTCGATCCTCATTCCGCCATTTTACTCGG
AATTAAAGGCGGAATTCAGTTGAAGGTGGAGGCAATCTAAAAGCTTTCTA
GACCAT
BS11844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a18-RB | 1524 | CG13977-PB | 1..1524 | 17..1540 | 7620 | 100 | Plus |
| Cyp6a18-RA | 1524 | CG13977-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
| Cyp6a8-RA | 1521 | CG10248-PA | 8..1433 | 24..1449 | 2450 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a18-RB | 4171 | CG13977-RB | 33..1558 | 17..1542 | 7630 | 100 | Plus |
| Cyp6a18-RA | 1730 | CG13977-RA | 33..1558 | 17..1542 | 7630 | 100 | Plus |
| Cyp6a8-RA | 1781 | CG10248-RA | 38..1463 | 24..1449 | 2450 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27478707..27479808 | 17..1118 | 5510 | 100 | Plus |
| 3R | 32079331 | 3R | 27479867..27480291 | 1118..1542 | 2125 | 100 | Plus |
| 2R | 25286936 | 2R | 14887879..14888973 | 1118..24 | 1710 | 77.1 | Minus |
| 2R | 25286936 | 2R | 14887489..14887820 | 1449..1118 | 745 | 81.6 | Minus |
| 2R | 25286936 | 2R | 14885884..14885990 | 1004..898 | 190 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:09 has no hits.
BS11844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:28 Download gff for
BS11844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a18-RA | 1..1524 | 17..1540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:20 Download gff for
BS11844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a18-RA | 23..1556 | 8..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:44 Download gff for
BS11844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a18-RA | 33..1554 | 17..1538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:30 Download gff for
BS11844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a18-RA | 31..1552 | 17..1538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:23 Download gff for
BS11844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a18-RA | 33..1554 | 17..1538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:23 Download gff for
BS11844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27478707..27479808 | 17..1118 | 100 | -> | Plus |
| 3R | 27479868..27480287 | 1119..1538 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:44 Download gff for
BS11844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23304429..23305530 | 17..1118 | 100 | -> | Plus |
| arm_3R | 23305590..23306009 | 1119..1538 | 100 | | Plus |
BS11844.pep Sequence
Translation from 16 to 1539
> BS11844.pep
MQLTYFLFQVAVALLAIVTYILHRKLTYFKRRGIPYDKPHPLRGNMEGYK
KTRTVHEIHQEYYNKYRNSKAPFVGFYLFQKPAAFVIDLELAKQILIKNF
SNFTDKGIYYNEKDDPMSAHLFNLDGPQWRLLRSKLSSTFTSGKMKFMYP
TVVSVAEEFMAVMHEKVSENSILDVRDLVARFTVDVIGTCAFGIKCNSLR
DEKAEFLHFGRRALLDSRHGNLVSGLMRSYPNLARRLGLCRNTAQIQEFY
QRIVKETVTLREKENIKRNDFMDMLIGLKNQKNMTLENGEVVKGLTMDEI
VAQAFVFFIAGFDTSSSTMGFALYELAKNPSIQDKVRAELGQVLEQHDQK
FTYECIKDLKYLDQVINETLRHYTIVPNVDRVAAKRFVVPGNPKFVIEAG
QSVIIPSSAIHHDPSIYPEPNEFRPERFSPEESAKRPSVAWLPFGEGPRN
CIGLRFGQMQARIGLAMLIKNFTFSPCSATPDPLTFDPHSAILLGIKGGI
QLKVEAI*
BS11844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a18-PB | 507 | CG13977-PB | 1..507 | 1..507 | 2635 | 100 | Plus |
| Cyp6a18-PA | 507 | CG13977-PA | 1..507 | 1..507 | 2635 | 100 | Plus |
| Cyp6a8-PA | 506 | CG10248-PA | 1..506 | 1..507 | 2133 | 79.1 | Plus |
| Cyp6a2-PA | 506 | CG9438-PA | 2..506 | 5..507 | 1479 | 53.4 | Plus |
| Cyp6a21-PA | 504 | CG10247-PA | 10..504 | 13..507 | 1391 | 54 | Plus |
