BS11846.complete Sequence
2063 bp assembled on 2009-12-07
GenBank Submission: KX804012
> BS11846.complete
GAAGTTATCAGTCGACATGCATCCCATGACGATGATGATGCTTCACATCG
TGATTTTAGCAGCCACTTTTACGGCTGCGCAGTGTTTTCAATTGAACATG
ACGCAGTTCTATGAGATGCCTCCTCTATACGACTTGGATGACTATGATCG
TTGCCTCCAGGAATTGAATGGCCAGGCGTCCACTTACTGCTTCGTCCGCG
CGGAAGTCCAGCCCGATGAGTCTGTAGCGGCATGGCGGGCAATTGCAGAG
ATTTCGCAGTACGATCGCCATCACTTCGATCACCGACAGCTCTATTTCGG
TCTCTGCCTGCGCGAATGTGAGGCGTCTCTGGCCGGGTTGAATAAAAGCG
AACTGGAGGCCCTGCAAGCCGGCCTGCTATCGGAAAATGCAAAGGTGAAC
GTATATCTGGACTTGTTCTCGATGGAAGCCAATAACCGCCAACGGCACCA
GCGCTTGACAAATGCCTGCCTGAACTGGCGTCTGCAGCGTCGTGGATTCG
GGGTGCTGGCCAAGAGCGTGGTGGAGTACTGCGATGAGGCGGGACATCAA
GTGGAAGATGATGCGTGGAACCTGACCTTCTACGGAATCTTGGGCACTCT
ACTGGTTCTGGCTTGTCTGGGTAGCTTAGTGGATCTGCATCTAAAGCGAA
GCCGTCATGATAAAATGCTCAAGGAGCGAGATCACTACAAGACACCGCCC
AAGAGCACTGCCCAACAGGTGCTGCTCACCTTTTCGGTGGCCCGCAATTG
GTACCGACTTAATCAGGAGCCAAGTGGTAAGATCGGTCGCGAGCTGAGAT
TTCTCGACTGCTTCAAGTTCTTTGCCATGTTCATGGTGATATTTGCGCAC
ACCAACTGGGTGATTTACGAGAGCGCCATCAGCAATCCGCAGGATCCGGA
GCGACTGCTTCACACGGCAGCTGGCACTTTACTCGTTTCGGGATCATTGA
TCACTGTGACCTTTTTTGTGATCAGTGGTTTGTTGCTTACCATTAACTGG
CTGGCCGTTTCACGTTCGCTAGAATCTAAAAAGGACACCTGGAGCTTCGG
CCAGTATGCTTTGCTATTTGTCAAGTTTAACATCTTCCGATACATCCGAC
TGACGGTTCCATATGCCTTTGTATTGCTCATGAGTGGCGTTTACTTTGAG
AACGCTGGAGGTCCACTGTGGCGGCACATCTTTGAGCGGGAGCAGTTGGC
TTGTCGACGCAACTGGTGGACCAATCTGCTCTACGTCAACAACTTTGTAC
GCACGGATGAGCGGTGCCTGCTCCAAGGTTGGTATTTGGCAGCGGATACT
CATTCCTTTGTGCTCAGCTTGGTGCTGCTGATGCTGGGTCACCGGTTCGT
CAGATGGAGCAAACAGCTCTATGCGGGCATTTTGGGTCTTTTTGTGGTGG
TGCCAATGGTGCTCACATATGCCATGAACTACTATCCCATTTTTGTACCC
ACGCCACAAACCCAGAAGGATTCCTTTATCGGAGATCGTCAATTCACCGA
ATTCTACACGTCGTCCTTTATGAACTTCGGTAGCTATTTCTGTGGAGTCC
TGGCCGCTTTGGTTTACGATCAGTTGGCATTGAAGCAATACAAACTACGG
GAGTTAAAGAGCTTCCAGCTTCTTTGGTTTACACTTATTCCAGTGGGGAT
TCTATGGCTGTTTAGTGCTCATCCCATCTTCCAGCACTACTACGTGACGC
CGTCGGCCATTTGGGGAGCATTATATGCCGGCCTGCAGCGAAACATCTGG
GGCTTCGGGCTGGGAATCTTCATCGTGGGCATGGCCAGCAAAGTGGGATG
GATTTTCCGTAAGTTCTGCTGCTTGCCCATTTTCCGCATTTTGGGACGCC
TCACTTATGGAGCCTTTATCGTCCACCTTCTTGTGGCGAGAATCGTCTTG
GCCACAGTGCGGGAGCCCATTTATTTTGGCACGGGCATGATGTTTGCTTT
CATCTTTTTTACGGTGACCGTGTCCTATCTCTGCTCCTTCTTGCTGGCCA
TCTTTCTGGAGCTTCCCGTCTCCTCCTTCCTCAAGCTTATGAGGTAGAAG
CTTTCTAGACCAT
BS11846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4576-RA | 2031 | CG4576-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4576-RA | 2433 | CG4576-RA | 351..2381 | 17..2047 | 10155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15828521..15829225 | 560..1264 | 3525 | 100 | Plus |
| 3R | 32079331 | 3R | 15829548..15829889 | 1459..1800 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 15827101..15827398 | 99..396 | 1490 | 100 | Plus |
| 3R | 32079331 | 3R | 15829289..15829483 | 1264..1458 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 15828226..15828393 | 393..560 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 15829951..15830093 | 1800..1942 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 15830164..15830269 | 1942..2047 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 15826097..15826178 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:01 has no hits.
BS11846.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:07 Download gff for
BS11846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4576-RA | 349..2379 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:54 Download gff for
BS11846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4576-RA | 351..2381 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:13 Download gff for
BS11846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4576-RA | 349..2379 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:18 Download gff for
BS11846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4576-RA | 351..2381 | 17..2047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:18 Download gff for
BS11846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15829290..15829483 | 1265..1458 | 100 | -> | Plus |
| 3R | 15826097..15826178 | 17..98 | 100 | -> | Plus |
| 3R | 15827101..15827396 | 99..394 | 100 | -> | Plus |
| 3R | 15828228..15828393 | 395..560 | 100 | -> | Plus |
| 3R | 15828522..15829225 | 561..1264 | 100 | -> | Plus |
| 3R | 15829548..15829888 | 1459..1799 | 100 | -> | Plus |
| 3R | 15829951..15830093 | 1800..1942 | 100 | -> | Plus |
| 3R | 15830165..15830269 | 1943..2047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:54 Download gff for
BS11846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11655012..11655205 | 1265..1458 | 100 | -> | Plus |
| arm_3R | 11655270..11655610 | 1459..1799 | 100 | -> | Plus |
| arm_3R | 11655673..11655815 | 1800..1942 | 100 | -> | Plus |
| arm_3R | 11651819..11651900 | 17..98 | 100 | -> | Plus |
| arm_3R | 11652823..11653118 | 99..394 | 100 | -> | Plus |
| arm_3R | 11653950..11654115 | 395..560 | 100 | -> | Plus |
| arm_3R | 11654244..11654947 | 561..1264 | 100 | -> | Plus |
| arm_3R | 11655887..11655991 | 1943..2047 | 100 | | Plus |
BS11846.pep Sequence
Translation from 16 to 2046
> BS11846.pep
MHPMTMMMLHIVILAATFTAAQCFQLNMTQFYEMPPLYDLDDYDRCLQEL
NGQASTYCFVRAEVQPDESVAAWRAIAEISQYDRHHFDHRQLYFGLCLRE
CEASLAGLNKSELEALQAGLLSENAKVNVYLDLFSMEANNRQRHQRLTNA
CLNWRLQRRGFGVLAKSVVEYCDEAGHQVEDDAWNLTFYGILGTLLVLAC
LGSLVDLHLKRSRHDKMLKERDHYKTPPKSTAQQVLLTFSVARNWYRLNQ
EPSGKIGRELRFLDCFKFFAMFMVIFAHTNWVIYESAISNPQDPERLLHT
AAGTLLVSGSLITVTFFVISGLLLTINWLAVSRSLESKKDTWSFGQYALL
FVKFNIFRYIRLTVPYAFVLLMSGVYFENAGGPLWRHIFEREQLACRRNW
WTNLLYVNNFVRTDERCLLQGWYLAADTHSFVLSLVLLMLGHRFVRWSKQ
LYAGILGLFVVVPMVLTYAMNYYPIFVPTPQTQKDSFIGDRQFTEFYTSS
FMNFGSYFCGVLAALVYDQLALKQYKLRELKSFQLLWFTLIPVGILWLFS
AHPIFQHYYVTPSAIWGALYAGLQRNIWGFGLGIFIVGMASKVGWIFRKF
CCLPIFRILGRLTYGAFIVHLLVARIVLATVREPIYFGTGMMFAFIFFTV
TVSYLCSFLLAIFLELPVSSFLKLMR*
BS11846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4576-PA | 676 | CG4576-PA | 1..676 | 1..676 | 3577 | 100 | Plus |
| CG9447-PC | 656 | CG9447-PC | 1..633 | 34..675 | 818 | 30.2 | Plus |
| CG32645-PB | 853 | CG32645-PB | 409..844 | 223..675 | 327 | 24.6 | Plus |
| CG14204-PB | 743 | CG14204-PB | 283..677 | 263..675 | 326 | 25.3 | Plus |
| CG14204-PA | 743 | CG14204-PA | 283..677 | 263..675 | 326 | 25.3 | Plus |
