BS11847.complete Sequence
2369 bp assembled on 2009-12-07
GenBank Submission: KX801310
> BS11847.complete
GAAGTTATCAGTCGACATGTTAGTGGCCACCGACGAAAACAATACCAATA
CCACCACCGCCAGCCGGAGCACACGCAACACCTGGAGATGGAGCCGCCTG
GCGTTGGCCGTTAGTCTCTTCGCCTACTGCTGCTGCGCCTCATCCGCGGC
CACGCCCACCACCTCGGTGACCACGGCCGCCCTTCTCAGCGGCCACCAGC
TGCTGCCCTGGCAAACGGCGGCTGCGACGGCGGCCACCACGCCCTCCACC
GCCCGCAATCTGTATGCGCCACACCAGAGCTTCAGCCGACACGATGACAT
CAGCTTTAAGGATCTGCGCCAGCGCAGCGATGGCACGGTGGTGCAGTCCT
TTGGTTCCTATCGCACCGCTCGTCAGTTTGGTGGCTACTCAACCACTGCC
CAGCGGCGATCGGACCCCGCCGTAGAAATCATTCCAGCTCCGTCCGTGGA
ATTGCCGCAGGGTGAGCTGATCACGGTGCCCAAGCAGCTGGTGCCCACGA
TGCCGGAGAATGTGACTCGCCAGGGTCGGCGTCGCAACTACATGTACATA
CCGCTGCAGACGGAGGGGGAGAATGGATCCGCGGCGCTGCTACAACTGCG
TCCCAGTCGGAACGCCACGCTTTCCGCGCTGGGACCTCCGGCCGATGGAG
TGGCCGCAGTGGCCCATGAATTTGGCGCCGATCTGGCCACCCAGGGATCT
GGACCGGAGCAGCCACCGCTGGCATTGGAACTGGGTCCCGAGCGAACCGA
ACGCAGCGATCTTATGGCCGCCGCCAGCTCCACGGACAAGCTGGAGTACG
CCGAGCCGGAGAACACCAGTCGCCGTGTGGGCTTCCAATTTCCCAGCTAC
AGCCTAAAGCCCGCCAGTCCCTTCCATCCGCAGGCCTACCGCGAGGATAA
CCCCATATTTGGGGACACCAGTGCCGGAGGCTATGAGCCCCAGCCGTACA
GCGAAGATGCGTCTCCCGTTCCGCCACCCACGCAGTACGAGCAGCACGAG
ACGCGGCACACACGGCAGCTCTACTTTGATTCGGACACCGCGTCCTCCAG
CTTCGAGTTTCCCGGCCTGGTGAGCAACTCCAAGCCGCATGGCCTCAAGC
TCTATCGCGACGATGTGACCAAGTTCGGGGATATCAATGGACCGATCACC
GCGCTACCGCAGCAGCGACCCCAGCGAGGCTTCTACTTCGGCGACACTGA
GTTCCGCACTGGTCCTCCTGCTCCGGTCCGCCAGTTTGGGCCGCAAAAGA
ACTTCCAGGAGTACGTGGGACCCAGCGAGTACCAGGGTACCCGGAAGAGC
CGCTACTATCCCTACAAGTCGTCGCGCAGTCCGAGGGTCGTCTTCCCCAC
CAACGACAACGTGGGCACCACCGGACCCAGTGGACCCGCCGGCAGCAGCG
GACCCTCCGGAAACGGAGTCTACTTCAGCGATAACATTGCTTTCAGGGAC
CAGAACTTCGGCATCAACGAATTGGCCGCCGTTCAGGATGTGCGCAATGA
CTACAGTCTGCAGGATCTGGACAGCGCCTCGGAGGCGACTAGCAGTCCGC
AGTCGGCGAGCACGTTCAAGGAGAAAGGCTGCGGCATTTCGCTGGCCAAG
CAGACCGCCCAGCGGCGCATTGTGGGCGGCGATGATGCGGGCTTCGGCTC
CTTTCCCTGGCAGGCCTACATCCGCATCGGTTCCTCCAGGTGCGGAGGTT
CGTTGATCTCGCGACGACACGTGGTCACCGCTGGTCATTGTGTGGCCCGG
GCCACTCCGCGACAGGTGCATGTCACGCTGGGTGATTACGTGATCAACTC
GGCCGTGGAGCCACTGCCGGCCTACACCTTCGGAGTCCGCCGGATCGACG
TGCATCCGTACTTCAAGTTCACGCCGCAGGCGGACCGCTTCGACATCTCC
GTGCTGACGCTAGAGCGTACCGTGCACTTCATGCCCCACATAGCTCCGAT
TTGCCTGCCCGAGAAGAACGAGGACTTCCTGGGCAAATTTGGCTGGGCAG
CCGGCTGGGGAGCTCTGAACCCGGGCTCCCGGCTGCGTCCCAAGACGCTG
CAGGCCGTGGATGTGCCCGTGATCGAGAACCGAATCTGCGAGCGCTGGCA
CCGGCAGAACGGCATCAACGTGGTCATCTACCAGGAGATGCTCTGCGCGG
GCTATCGCAACGGTGGCAAGGACTCGTGCCAAGGCGACTCTGGAGGACCT
TTGATGCACGACAAGAATGGGCGCTGGTACCTGATTGGTGTGGTCTCTGC
TGGTTACTCCTGCGCGTCCCGCGGTCAGCCGGGAATCTATCACAGCGTCA
GCAAGACCGTGGACTGGGTATCCTACGTCGTCGGACTCACGATGAACATC
TAAAAGCTTTCTAGACCAT
BS11847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8170-RB | 2337 | CG8170-PB | 1..2337 | 17..2353 | 11670 | 100 | Plus |
| CG8170-RA | 2568 | CG8170-PA | 1..1561 | 17..1577 | 7790 | 99.9 | Plus |
| CG8170-RA | 2568 | CG8170-PA | 1793..2568 | 1578..2353 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8170-RB | 3672 | CG8170-RB | 935..3271 | 17..2353 | 11670 | 100 | Plus |
| CG8170-RA | 3887 | CG8170-RA | 919..2479 | 17..1577 | 7790 | 99.9 | Plus |
| CG8170-RA | 3887 | CG8170-RA | 2711..3486 | 1578..2353 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9021962..9023392 | 1447..17 | 7140 | 99.9 | Minus |
| 2R | 25286936 | 2R | 9019603..9019901 | 2240..1942 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 9020034..9020290 | 1943..1687 | 1285 | 100 | Minus |
| 2R | 25286936 | 2R | 9021727..9021861 | 1578..1444 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 9019433..9019549 | 2353..2237 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 9020351..9020467 | 1692..1576 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:12:45 has no hits.
BS11847.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:58 Download gff for
BS11847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8170-RB | 920..3249 | 22..2351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:47 Download gff for
BS11847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8170-RB | 940..3269 | 22..2351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:27 Download gff for
BS11847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8170-RB | 920..3249 | 22..2351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:25 Download gff for
BS11847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8170-RB | 940..3269 | 22..2351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:25 Download gff for
BS11847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9019435..9019548 | 2238..2351 | 100 | <- | Minus |
| 2R | 9019606..9019899 | 1944..2237 | 100 | <- | Minus |
| 2R | 9020034..9020287 | 1690..1943 | 100 | <- | Minus |
| 2R | 9020354..9020465 | 1578..1689 | 100 | <- | Minus |
| 2R | 9021728..9021858 | 1447..1577 | 100 | <- | Minus |
| 2R | 9021963..9023387 | 22..1446 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:47 Download gff for
BS11847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4906940..4907053 | 2238..2351 | 100 | <- | Minus |
| arm_2R | 4907111..4907404 | 1944..2237 | 100 | <- | Minus |
| arm_2R | 4907539..4907792 | 1690..1943 | 100 | <- | Minus |
| arm_2R | 4907859..4907970 | 1578..1689 | 100 | <- | Minus |
| arm_2R | 4909233..4909363 | 1447..1577 | 100 | <- | Minus |
| arm_2R | 4909468..4910892 | 22..1446 | 99 | | Minus |
BS11847.pep Sequence
Translation from 16 to 2352
> BS11847.pep
MLVATDENNTNTTTASRSTRNTWRWSRLALAVSLFAYCCCASSAATPTTS
VTTAALLSGHQLLPWQTAAATAATTPSTARNLYAPHQSFSRHDDISFKDL
RQRSDGTVVQSFGSYRTARQFGGYSTTAQRRSDPAVEIIPAPSVELPQGE
LITVPKQLVPTMPENVTRQGRRRNYMYIPLQTEGENGSAALLQLRPSRNA
TLSALGPPADGVAAVAHEFGADLATQGSGPEQPPLALELGPERTERSDLM
AAASSTDKLEYAEPENTSRRVGFQFPSYSLKPASPFHPQAYREDNPIFGD
TSAGGYEPQPYSEDASPVPPPTQYEQHETRHTRQLYFDSDTASSSFEFPG
LVSNSKPHGLKLYRDDVTKFGDINGPITALPQQRPQRGFYFGDTEFRTGP
PAPVRQFGPQKNFQEYVGPSEYQGTRKSRYYPYKSSRSPRVVFPTNDNVG
TTGPSGPAGSSGPSGNGVYFSDNIAFRDQNFGINELAAVQDVRNDYSLQD
LDSASEATSSPQSASTFKEKGCGISLAKQTAQRRIVGGDDAGFGSFPWQA
YIRIGSSRCGGSLISRRHVVTAGHCVARATPRQVHVTLGDYVINSAVEPL
PAYTFGVRRIDVHPYFKFTPQADRFDISVLTLERTVHFMPHIAPICLPEK
NEDFLGKFGWAAGWGALNPGSRLRPKTLQAVDVPVIENRICERWHRQNGI
NVVIYQEMLCAGYRNGGKDSCQGDSGGPLMHDKNGRWYLIGVVSAGYSCA
SRGQPGIYHSVSKTVDWVSYVVGLTMNI*
BS11847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8170-PB | 778 | CG8170-PB | 1..778 | 1..778 | 4131 | 100 | Plus |
| CG8170-PA | 855 | CG8170-PA | 1..855 | 1..778 | 3704 | 85 | Plus |
| CG13744-PA | 389 | CG13744-PA | 128..384 | 522..772 | 539 | 44 | Plus |
| CG8172-PD | 371 | CG8172-PD | 96..366 | 501..772 | 521 | 40.4 | Plus |
| CG8172-PE | 545 | CG8172-PE | 165..540 | 419..772 | 519 | 35.1 | Plus |
