BS11852.complete Sequence
1124 bp assembled on 2006-11-01
GenBank Submission: FJ636993
> BS11852.complete
GAAGTTATCAGTCGACATGATTAACCGCCGTCAGCGTTTGGAATTCGCCC
TGACCCTATTGCCCTATGATCCCGAGACAGTTCAGTTGTCTGAAACGCAG
AAAAAAGTGGAGGCGATCATCGCCCGCCTGCGAACGGATGACTCCTTTAC
GGAGGAGGAGAGCGATGACTGCAAGGTGCGGCGCATTCAAGATGCAAATG
AGTTTGCCGATTCCGCCATGCGACACATCGAAATGTCCGATAGTGGCAAG
CTGAGCACTCTGGAAACTCTTACACTGGCTGCTGAGAAGCTGCTAAGGAC
ACAGCGTTCACCGGATCAGGATTTCGATGACATGGTGCAGGATGTGGAGT
ACTCGCAGCTGATGAGGAACACCATCCAGGCGGTAAATGAGGCGCGTTTG
AAGCTTCTCCAGCAATGGGAGCGCAGTAAGCGCAAGGCTCTCGATCTCCT
CACCATCGAAATTGAAAAGGTCCAGGAAATGGATCAGGAGCCAGAGCACA
AACAGTCTCATGAGCAGGACCAGGATCAGGAGCAGAGTTCGGAGCCTTTT
AACGCGTTTCGCGATGGAGCCGATGAGCACAACACCTCGACGCCGAAAAC
AAACGACGAAGATCTTGGTTTGGACGATGACGATGAGGACTATGTGCCCG
GCGGAGAAGAGACAATGGGTAACAAGAGGAAGCGTATCAAGAAACCGGTG
ACCTCCACTCCGAATGCGAAACGGCGGTGTCCTGGTTTCGAATTCGACCT
GGACGGCGAATCGCCGATGGTGACGATCGGTCCCAATGGCACCGAAGTTT
CCCGCATTAGCCTAAGTGCCATCAACTGGGACATGACCGGACCCTCGATC
ACGAGGAAGCTGCTCTGCGAGATCTTCGACCGGGATACACTGGCCCATCA
TACGCTATCCGGAAAACCATCGCCGGCATTTAGGGACTGTGCCCGTCCCA
GCAAACAGCAGCTGGATCCGCTCAAGGTGGCCGATCTGGTCTATCTGATG
ACTAACAGCCTGGACATGACTCCGCGGGAAGTGCGCACTGCCATCACCAC
CAAATGTGCGGATGAAAACAAGATGCTACGCTCGCGAATGCAGCGCAAAT
CAAAGTAGAAGCTTTCTAGACCAT
BS11852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25A-RA | 1092 | CG12205-PA | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25A-RA | 1352 | CG12205-RA | 89..1180 | 17..1108 | 5460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4683224..4684313 | 1108..19 | 5450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:38:53 has no hits.
BS11852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:11 Download gff for
BS11852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25A-RA | 1..1092 | 17..1108 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:11 Download gff for
BS11852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25A-RA | 80..1186 | 9..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:05 Download gff for
BS11852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25A-RA | 89..1180 | 17..1108 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:11 Download gff for
BS11852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25A-RA | 80..1186 | 9..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:01 Download gff for
BS11852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25A-RA | 89..1180 | 17..1108 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:01 Download gff for
BS11852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4683224..4684314 | 17..1108 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:05 Download gff for
BS11852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4683224..4684314 | 17..1108 | 99 | | Minus |
BS11852.pep Sequence
Translation from 16 to 1107
> BS11852.pep
MINRRQRLEFALTLLPYDPETVQLSETQKKVEAIIARLRTDDSFTEEESD
DCKVRRIQDANEFADSAMRHIEMSDSGKLSTLETLTLAAEKLLRTQRSPD
QDFDDMVQDVEYSQLMRNTIQAVNEARLKLLQQWERSKRKALDLLTIEIE
KVQEMDQEPEHKQSHEQDQDQEQSSEPFNAFRDGADEHNTSTPKTNDEDL
GLDDDDEDYVPGGEETMGNKRKRIKKPVTSTPNAKRRCPGFEFDLDGESP
MVTIGPNGTEVSRISLSAINWDMTGPSITRKLLCEIFDRDTLAHHTLSGK
PSPAFRDCARPSKQQLDPLKVADLVYLMTNSLDMTPREVRTAITTKCADE
NKMLRSRMQRKSK*
BS11852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25A-PA | 363 | CG12205-PA | 1..363 | 1..363 | 1871 | 100 | Plus |
| insv-PB | 376 | CG3227-PB | 168..365 | 158..362 | 290 | 38.3 | Plus |
| insv-PA | 376 | CG3227-PA | 168..365 | 158..362 | 290 | 38.3 | Plus |
| Elba2-PA | 381 | CG9883-PA | 261..374 | 249..363 | 230 | 43.5 | Plus |
