BS11853.complete Sequence
1592 bp assembled on 2008-08-14
GenBank Submission: FJ636994
> BS11853.complete
GAAGTTATCAGTCGACATGAGGCTTCCGAAAGGATATAGGACACTATCAC
CAGCATCGAACGCTGCCCAGACGCTACCACTCTCCTACAATTCACAAACC
AGTCTGAGCCTTCTTCGGCTGCTCACAATTGCTCTGGTGATTGGATCGCA
AGTTCAAGTTCTATACACGACATCCGTCGAAACAAAATCCCCCTCCGCAA
GTGAACAATCCAGAAACGGCGAGAATCGTTCATTACTTTTTGATGACTAT
AATAAAACTAAATCGACATTATCAACTGCTGATTACCTGTCAGCCACAAG
GGCAACCCTTTACGCGTTTTCATCGCAGGATCAGGACGAGGACCATTCCC
AAATGCCAATCGAGGCGTCTAACGCTCCGCACAGCCCCATTCCCACGAAA
ATGAGTCGGGGTAAAATACCCATGGAGACACCGGGCAGCATGGAGTTTAG
CAGCAATAGCCTTCCAATCAAAAATGTAGGGACAACTGATCAGCTGACGA
CTGTGACCATGCCCACCACAGCATTCGCATCCCTAAAAGTCGACAGAAGT
ACCATGAAACAGCCAATTGATTCCACACGCACGAGGAATCATTGGACAGC
AAGTGGATTCGCACGTGTCACAGAACGACCACGTAGCAAGCACCACCACG
AGCACCACTGGGGACCCTTTTTTGAGGAGCCCATCAACTCGGCAACCTCG
GGTGACAACCTCGTTTCCGCCGTACATTTGTTTACGGAAGCGGTGCTCAA
TTGCCGTGTCGGTATGCTCAAGGATAAAACTGTCATGTGGGTCAGGCGAA
CGGCAGAGAAGGTATCGCTCCTGACCGTTGGCAACGTGACCTACAGTGGA
GACCCGAGAATTCGGGTGAAGTTCCAGTACCCGAACAATTGGCGATTACT
TATCAATCCCACGCAGACTGAAGATGCCGGAGTTTACATGTGCCAGGTTT
CCACCCATCCCCCCCGGGTATTCACCACAAATCTCACTGTCTTGGAACCC
CCCCTGAGGATAATCGATGAGCACGAGAGGGACGTGGGGGATCGTTATTA
TAAGTCTGGAAGCACCGTCGATCTACAATGCCAAATATCGCGTAGCTTTT
TCCAAAAAGAACGTCAGACCATTCTAAAATCAACCGATTCTGCAAACGAT
GCTGTACAGAAACTAATCAATGAGACGACTAGTGAGCTTAATCTAATTGG
CAACGTAAATCAGACGCAACACAAGTTCTCTGGCCAGGATCTGGAGAAAT
ACTTCACCAAGTTTATAACCTGGGCAAAGGACGAAGAACCACTGCAAGGA
ATGACCAATAGGCGCTTAAGCGTTTCCGATGTTTGGCTAACCAGTCGTAT
CTCCATTGGAGATGCCAAACTATCCGATAGTGGCAACTATTCCTGTTCCC
TTGGCAGACTGTTCACCGTAATTGTCCAAGTTCAAGTGCTCACAGGCGAA
CTACCCGCAGCTGTTCAGCACAATATTGGTTCAAGAACCGAAATCTATTC
CCTTGCGATGTTGGGTCATCTCCTTGTACTCATTTTCCTCTTCACTTGCC
TGAAAACCGAAAATCGACATTTCTGAAAGCTTTCTAGACCAT
BS11853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-RA | 1560 | CG14948-PA | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-RA | 2630 | CG14948-RA | 461..2020 | 17..1576 | 7800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16066367..16066808 | 165..606 | 2210 | 100 | Plus |
| X | 23542271 | X | 16068990..16069315 | 995..1320 | 1630 | 100 | Plus |
| X | 23542271 | X | 16068715..16068928 | 782..995 | 1070 | 100 | Plus |
| X | 23542271 | X | 16067623..16067801 | 605..783 | 895 | 100 | Plus |
| X | 23542271 | X | 16065552..16065699 | 17..164 | 740 | 100 | Plus |
| X | 23542271 | X | 16069560..16069694 | 1442..1576 | 675 | 100 | Plus |
| X | 23542271 | X | 16069371..16069498 | 1319..1446 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:06:26 has no hits.
BS11853.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:23 Download gff for
BS11853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 455..2023 | 10..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:58 Download gff for
BS11853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 458..2016 | 17..1575 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:06 Download gff for
BS11853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 458..2016 | 17..1575 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:05 Download gff for
BS11853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 461..2019 | 17..1575 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:05 Download gff for
BS11853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16067624..16067799 | 606..781 | 100 | -> | Plus |
| X | 16068715..16068928 | 782..995 | 100 | -> | Plus |
| X | 16068991..16069315 | 996..1320 | 100 | -> | Plus |
| X | 16069373..16069497 | 1321..1445 | 100 | -> | Plus |
| X | 16069564..16069693 | 1446..1575 | 100 | | Plus |
| X | 16065552..16065699 | 17..164 | 100 | -> | Plus |
| X | 16066367..16066807 | 165..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:58 Download gff for
BS11853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15959585..15959732 | 17..164 | 100 | -> | Plus |
| arm_X | 15960400..15960840 | 165..605 | 100 | -> | Plus |
| arm_X | 15961657..15961832 | 606..781 | 100 | -> | Plus |
| arm_X | 15962748..15962961 | 782..995 | 100 | -> | Plus |
| arm_X | 15963024..15963348 | 996..1320 | 100 | -> | Plus |
| arm_X | 15963406..15963530 | 1321..1445 | 100 | -> | Plus |
| arm_X | 15963597..15963726 | 1446..1575 | 100 | | Plus |
BS11853.pep Sequence
Translation from 16 to 1575
> BS11853.pep
MRLPKGYRTLSPASNAAQTLPLSYNSQTSLSLLRLLTIALVIGSQVQVLY
TTSVETKSPSASEQSRNGENRSLLFDDYNKTKSTLSTADYLSATRATLYA
FSSQDQDEDHSQMPIEASNAPHSPIPTKMSRGKIPMETPGSMEFSSNSLP
IKNVGTTDQLTTVTMPTTAFASLKVDRSTMKQPIDSTRTRNHWTASGFAR
VTERPRSKHHHEHHWGPFFEEPINSATSGDNLVSAVHLFTEAVLNCRVGM
LKDKTVMWVRRTAEKVSLLTVGNVTYSGDPRIRVKFQYPNNWRLLINPTQ
TEDAGVYMCQVSTHPPRVFTTNLTVLEPPLRIIDEHERDVGDRYYKSGST
VDLQCQISRSFFQKERQTILKSTDSANDAVQKLINETTSELNLIGNVNQT
QHKFSGQDLEKYFTKFITWAKDEEPLQGMTNRRLSVSDVWLTSRISIGDA
KLSDSGNYSCSLGRLFTVIVQVQVLTGELPAAVQHNIGSRTEIYSLAMLG
HLLVLIFLFTCLKTENRHF*
BS11853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-PA | 519 | CG14948-PA | 1..519 | 1..519 | 2677 | 100 | Plus |
| dpr14-PB | 340 | CG10946-PB | 69..313 | 213..512 | 392 | 33.7 | Plus |
| dpr14-PA | 340 | CG10946-PA | 69..313 | 213..512 | 392 | 33.7 | Plus |
| dpr20-PA | 525 | CG12191-PA | 257..517 | 209..508 | 362 | 30 | Plus |
| dpr10-PC | 408 | CG32057-PC | 23..309 | 186..486 | 253 | 29.1 | Plus |
