Clone BS11854 Report

Search the DGRC for BS11854

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG31871-RA
Protein status:BS11854.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11854.complete Sequence

1628 bp assembled on 2007-10-26

GenBank Submission: FJ636995

> BS11854.complete
GAAGTTATCAGTCGACATGCGGTCCACCGTCGAGGTCAAGGGTCGCCTGC
TGTTGACCCTGCTGCTACACTGCCTCGTCGCTCTCGAGGTGTGCGGACGG
GCCGGTGCCTTCACCCTCCTCTCGCCCTTTAGCTACAGCTCCCTGAGCTT
CAAGAACCTGCTCAACTCTGTGCTGCTCTCGAGCAACCCCAACCTGGCCG
GCGGCGGAAGGAACCTCAAATCGGATGTCCTAGAAGATGCATCCCTCATT
ACGCCCAAATTAATACGCAAATATGGATATCCATCGGAAACCCACACGGT
GGTGACGAAGGATGGCTATATCCTGGAAATGCATCGCATTCCCAAGAAGG
GAGCCCAGCCGGTTCTCCTCATGCACGGAATTCTTGATACCTCTGCAACA
TGGGTGCTTATGGGACCCAAGTCAGGATTAGGCTACATGCTCTCCGATCT
GGGCTACGACGTGTGGATGGGCAACTCTCGGGGCAATCGGTACTCCAAGA
ACCACACCAGTTTGAATAGCGACTATCAGGAGTTCTGGGACTTCACCTTC
CACGAGATGGGCAAGTACGACCTTCCGGCCAATATCGACTACATCCTGAG
CAAGACGGGATACGAGCAGGTCCACTACATCGGTCACTCCCAGGGAACAG
CCATCTTCTGGGTCCTGTGCTCCGAGCAGCCCGCCTACACCCAGAAGATA
ACCTCCATGCACGCCCTGGCGCCCATCGCCTACATACACGACATGAAGAG
CCCCCTGTTCCGCACCCTGGTCCTCTTCCTCGACTTTCTCACGGCCGCCA
CACGAATGCTGCGCATCACAGAATTCATGCCCAACACAAAATTCCTAGTG
GACCACAGCCAGGTTGTGTGCCACGACAACGCCATGACGCAGGACGTCTG
CTCGAATATCCTGTTTTTGGTCGCCGGCTACAACTCCGAACAGCTGAACA
AAACCATGCTTCCTGTGATGCTGAGCCACACGCCATCGGGAGCCTCGATT
AAGCAGCTGGAGCACTTTGGCCAGCTGATGAAGTCGGGCCATTTCCGGAA
ATTCGACCGCGGCTATCTGCGCAACCAGCTGGAGTACAACCGGATGACTC
CGCCGGACTATGACTTGTCCAGGGTGAAAGTGCCGGTGGCACTATATTAC
TCGGTGAATGATCTGCTTGTCTCCACCACGGGAGTGGACCGTTTGGCCCG
CGAGCTGCCGAATGTGATCGACAAGTATTTGGTGCCCATGGAGCGTTTTA
ATCACCTCGACTTCCTATGGGCCATCGATGTGAAGCCACTGGTGTACAAT
CGCCTCGTGCGAAATGTGCGCCGGGTGGAGAATCATCGGGCCAAGCTCAC
GGCCAATTTGGCCAATTACCTGGCCATGCAGCTGCAGCGCCAGCAGCTCC
GCCAACAGATGCAGCAGCAAATGATGGAGGGTCTGCCGCCCAATGTGCAC
CTGCCCCACGGACTGGGCATGGAAATGTTGGCCAGGGCAACCACCTTTGC
TCCGGTCACACATCCCACCACAACCATGACCATGCCCACGACAACGACGG
AGAATGATGCGGAGGATGAGGTCCTGACTACCGCCGCCACCGCAACGGAA
GTACCGGCGTGAAAGCTTTCTAGACCAT

BS11854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-RA 1596 CG31871-PA 1..1596 17..1612 7980 100 Plus
CG18301-RA 1269 CG18301-PA 418..546 533..661 180 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-RA 2332 CG31871-RA 429..2024 17..1612 7980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10670520..10671179 953..1612 3300 100 Plus
2L 23513712 2L 10668691..10669055 430..794 1825 100 Plus
2L 23513712 2L 10662509..10662745 17..253 1185 100 Plus
2L 23513712 2L 10668158..10668337 253..432 900 100 Plus
2L 23513712 2L 10669170..10669329 793..952 800 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:43:04 has no hits.

BS11854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:30 Download gff for BS11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 1..1596 17..1612 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:22 Download gff for BS11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 421..2022 13..1619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:38:09 Download gff for BS11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 429..2023 17..1611 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:47 Download gff for BS11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 423..2017 17..1611 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:03 Download gff for BS11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG31871-RA 429..2023 17..1611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:03 Download gff for BS11854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10668159..10668336 254..431 100 -> Plus
2L 10662509..10662745 17..253 100 -> Plus
2L 10668693..10669054 432..793 100 -> Plus
2L 10669171..10669329 794..952 100 -> Plus
2L 10670520..10671178 953..1611 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:38:09 Download gff for BS11854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10662509..10662745 17..253 100 -> Plus
arm_2L 10668159..10668336 254..431 100 -> Plus
arm_2L 10668693..10669054 432..793 100 -> Plus
arm_2L 10669171..10669329 794..952 100 -> Plus
arm_2L 10670520..10671178 953..1611 100   Plus

BS11854.pep Sequence

Translation from 16 to 1611

> BS11854.pep
MRSTVEVKGRLLLTLLLHCLVALEVCGRAGAFTLLSPFSYSSLSFKNLLN
SVLLSSNPNLAGGGRNLKSDVLEDASLITPKLIRKYGYPSETHTVVTKDG
YILEMHRIPKKGAQPVLLMHGILDTSATWVLMGPKSGLGYMLSDLGYDVW
MGNSRGNRYSKNHTSLNSDYQEFWDFTFHEMGKYDLPANIDYILSKTGYE
QVHYIGHSQGTAIFWVLCSEQPAYTQKITSMHALAPIAYIHDMKSPLFRT
LVLFLDFLTAATRMLRITEFMPNTKFLVDHSQVVCHDNAMTQDVCSNILF
LVAGYNSEQLNKTMLPVMLSHTPSGASIKQLEHFGQLMKSGHFRKFDRGY
LRNQLEYNRMTPPDYDLSRVKVPVALYYSVNDLLVSTTGVDRLARELPNV
IDKYLVPMERFNHLDFLWAIDVKPLVYNRLVRNVRRVENHRAKLTANLAN
YLAMQLQRQQLRQQMQQQMMEGLPPNVHLPHGLGMEMLARATTFAPVTHP
TTTMTMPTTTTENDAEDEVLTTAATATEVPA*

BS11854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31871-PA 531 CG31871-PA 1..531 1..531 2774 100 Plus
Lip4-PA 434 CG6113-PA 4..431 10..439 1097 46.4 Plus
Lip4-PB 432 CG6113-PB 4..429 10..439 1095 46.7 Plus
Lip4-PC 448 CG6113-PC 21..445 20..439 1094 47 Plus
CG18301-PA 422 CG18301-PA 34..396 67..431 987 49.1 Plus