BS11854.complete Sequence
1628 bp assembled on 2007-10-26
GenBank Submission: FJ636995
> BS11854.complete
GAAGTTATCAGTCGACATGCGGTCCACCGTCGAGGTCAAGGGTCGCCTGC
TGTTGACCCTGCTGCTACACTGCCTCGTCGCTCTCGAGGTGTGCGGACGG
GCCGGTGCCTTCACCCTCCTCTCGCCCTTTAGCTACAGCTCCCTGAGCTT
CAAGAACCTGCTCAACTCTGTGCTGCTCTCGAGCAACCCCAACCTGGCCG
GCGGCGGAAGGAACCTCAAATCGGATGTCCTAGAAGATGCATCCCTCATT
ACGCCCAAATTAATACGCAAATATGGATATCCATCGGAAACCCACACGGT
GGTGACGAAGGATGGCTATATCCTGGAAATGCATCGCATTCCCAAGAAGG
GAGCCCAGCCGGTTCTCCTCATGCACGGAATTCTTGATACCTCTGCAACA
TGGGTGCTTATGGGACCCAAGTCAGGATTAGGCTACATGCTCTCCGATCT
GGGCTACGACGTGTGGATGGGCAACTCTCGGGGCAATCGGTACTCCAAGA
ACCACACCAGTTTGAATAGCGACTATCAGGAGTTCTGGGACTTCACCTTC
CACGAGATGGGCAAGTACGACCTTCCGGCCAATATCGACTACATCCTGAG
CAAGACGGGATACGAGCAGGTCCACTACATCGGTCACTCCCAGGGAACAG
CCATCTTCTGGGTCCTGTGCTCCGAGCAGCCCGCCTACACCCAGAAGATA
ACCTCCATGCACGCCCTGGCGCCCATCGCCTACATACACGACATGAAGAG
CCCCCTGTTCCGCACCCTGGTCCTCTTCCTCGACTTTCTCACGGCCGCCA
CACGAATGCTGCGCATCACAGAATTCATGCCCAACACAAAATTCCTAGTG
GACCACAGCCAGGTTGTGTGCCACGACAACGCCATGACGCAGGACGTCTG
CTCGAATATCCTGTTTTTGGTCGCCGGCTACAACTCCGAACAGCTGAACA
AAACCATGCTTCCTGTGATGCTGAGCCACACGCCATCGGGAGCCTCGATT
AAGCAGCTGGAGCACTTTGGCCAGCTGATGAAGTCGGGCCATTTCCGGAA
ATTCGACCGCGGCTATCTGCGCAACCAGCTGGAGTACAACCGGATGACTC
CGCCGGACTATGACTTGTCCAGGGTGAAAGTGCCGGTGGCACTATATTAC
TCGGTGAATGATCTGCTTGTCTCCACCACGGGAGTGGACCGTTTGGCCCG
CGAGCTGCCGAATGTGATCGACAAGTATTTGGTGCCCATGGAGCGTTTTA
ATCACCTCGACTTCCTATGGGCCATCGATGTGAAGCCACTGGTGTACAAT
CGCCTCGTGCGAAATGTGCGCCGGGTGGAGAATCATCGGGCCAAGCTCAC
GGCCAATTTGGCCAATTACCTGGCCATGCAGCTGCAGCGCCAGCAGCTCC
GCCAACAGATGCAGCAGCAAATGATGGAGGGTCTGCCGCCCAATGTGCAC
CTGCCCCACGGACTGGGCATGGAAATGTTGGCCAGGGCAACCACCTTTGC
TCCGGTCACACATCCCACCACAACCATGACCATGCCCACGACAACGACGG
AGAATGATGCGGAGGATGAGGTCCTGACTACCGCCGCCACCGCAACGGAA
GTACCGGCGTGAAAGCTTTCTAGACCAT
BS11854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-RA | 1596 | CG31871-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
CG18301-RA | 1269 | CG18301-PA | 418..546 | 533..661 | 180 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-RA | 2332 | CG31871-RA | 429..2024 | 17..1612 | 7980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10670520..10671179 | 953..1612 | 3300 | 100 | Plus |
2L | 23513712 | 2L | 10668691..10669055 | 430..794 | 1825 | 100 | Plus |
2L | 23513712 | 2L | 10662509..10662745 | 17..253 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 10668158..10668337 | 253..432 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10669170..10669329 | 793..952 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:43:04 has no hits.
BS11854.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:30 Download gff for
BS11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 1..1596 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:22 Download gff for
BS11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 421..2022 | 13..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:38:09 Download gff for
BS11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 429..2023 | 17..1611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:47 Download gff for
BS11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 423..2017 | 17..1611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:03 Download gff for
BS11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31871-RA | 429..2023 | 17..1611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:03 Download gff for
BS11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10668159..10668336 | 254..431 | 100 | -> | Plus |
2L | 10662509..10662745 | 17..253 | 100 | -> | Plus |
2L | 10668693..10669054 | 432..793 | 100 | -> | Plus |
2L | 10669171..10669329 | 794..952 | 100 | -> | Plus |
2L | 10670520..10671178 | 953..1611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:38:09 Download gff for
BS11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10662509..10662745 | 17..253 | 100 | -> | Plus |
arm_2L | 10668159..10668336 | 254..431 | 100 | -> | Plus |
arm_2L | 10668693..10669054 | 432..793 | 100 | -> | Plus |
arm_2L | 10669171..10669329 | 794..952 | 100 | -> | Plus |
arm_2L | 10670520..10671178 | 953..1611 | 100 | | Plus |
BS11854.pep Sequence
Translation from 16 to 1611
> BS11854.pep
MRSTVEVKGRLLLTLLLHCLVALEVCGRAGAFTLLSPFSYSSLSFKNLLN
SVLLSSNPNLAGGGRNLKSDVLEDASLITPKLIRKYGYPSETHTVVTKDG
YILEMHRIPKKGAQPVLLMHGILDTSATWVLMGPKSGLGYMLSDLGYDVW
MGNSRGNRYSKNHTSLNSDYQEFWDFTFHEMGKYDLPANIDYILSKTGYE
QVHYIGHSQGTAIFWVLCSEQPAYTQKITSMHALAPIAYIHDMKSPLFRT
LVLFLDFLTAATRMLRITEFMPNTKFLVDHSQVVCHDNAMTQDVCSNILF
LVAGYNSEQLNKTMLPVMLSHTPSGASIKQLEHFGQLMKSGHFRKFDRGY
LRNQLEYNRMTPPDYDLSRVKVPVALYYSVNDLLVSTTGVDRLARELPNV
IDKYLVPMERFNHLDFLWAIDVKPLVYNRLVRNVRRVENHRAKLTANLAN
YLAMQLQRQQLRQQMQQQMMEGLPPNVHLPHGLGMEMLARATTFAPVTHP
TTTMTMPTTTTENDAEDEVLTTAATATEVPA*
BS11854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31871-PA | 531 | CG31871-PA | 1..531 | 1..531 | 2774 | 100 | Plus |
Lip4-PA | 434 | CG6113-PA | 4..431 | 10..439 | 1097 | 46.4 | Plus |
Lip4-PB | 432 | CG6113-PB | 4..429 | 10..439 | 1095 | 46.7 | Plus |
Lip4-PC | 448 | CG6113-PC | 21..445 | 20..439 | 1094 | 47 | Plus |
CG18301-PA | 422 | CG18301-PA | 34..396 | 67..431 | 987 | 49.1 | Plus |