BS11855.complete Sequence
947 bp assembled on 2006-11-01
GenBank Submission: FJ636996
> BS11855.complete
GAAGTTATCAGTCGACATGCAGCGTAAATTACACAAAAATATTCAGGCAA
CTGGACATCTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCC
ACAATGGGCGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGAT
GCAATTGATGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGG
CCAGGAATGCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAAT
GACAATGAGCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAA
GGGACGTTGCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGC
CGCACGAGGCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTAT
ACCGCCGGTCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTA
TGGCCGTTTCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGG
CGACACAGCAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGA
GAGCATCGGTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCG
ATACAAGGTACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCC
AATGGACCTACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACC
GAAGCCGTTGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGT
GGCGATCGTTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATA
ACAAATCGCCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGAC
AACAACATCTTTCCACTTATTGTGCGCAATGCCACGCGGCATGCACGCAA
ACAAGGCAAGGCTAAGCCGCCTGGCCGTTAAAAGCTTTCTAGACCAT
BS11855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-RB | 858 | CG42749-PB | 1..858 | 74..931 | 4290 | 100 | Plus |
| CG42749-RC | 1038 | CG42749-PC | 1..803 | 74..876 | 4015 | 100 | Plus |
| CG42749-RD | 1038 | CG42749-PD | 1..803 | 74..876 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-RB | 1407 | CG42749-RB | 225..1139 | 18..932 | 4575 | 100 | Plus |
| CG42749-RC | 1412 | CG42749-RC | 225..1083 | 18..876 | 4295 | 100 | Plus |
| CG42749-RD | 1488 | CG42749-RD | 301..1159 | 18..876 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5301464..5302059 | 130..725 | 2980 | 100 | Plus |
| X | 23542271 | X | 5302118..5302271 | 723..876 | 770 | 100 | Plus |
| X | 23542271 | X | 5301319..5301404 | 45..130 | 430 | 100 | Plus |
| X | 23542271 | X | 5302570..5302626 | 876..932 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:17 has no hits.
BS11855.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:13 Download gff for
BS11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15786-RA | 1..858 | 74..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:13 Download gff for
BS11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15786-RA | 201..1136 | 10..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:31 Download gff for
BS11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RB | 223..1136 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:13 Download gff for
BS11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15786-RA | 201..1136 | 10..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:05 Download gff for
BS11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RB | 223..1136 | 17..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:05 Download gff for
BS11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5302571..5302623 | 877..929 | 100 | | Plus |
| X | 5296364..5296394 | 17..46 | 96 | -> | Plus |
| X | 5301321..5301404 | 47..130 | 100 | -> | Plus |
| X | 5301465..5302059 | 131..725 | 100 | -> | Plus |
| X | 5302121..5302271 | 726..876 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:31 Download gff for
BS11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5190397..5190427 | 17..46 | 96 | -> | Plus |
| arm_X | 5195354..5195437 | 47..130 | 100 | -> | Plus |
| arm_X | 5195498..5196092 | 131..725 | 100 | -> | Plus |
| arm_X | 5196154..5196304 | 726..876 | 100 | -> | Plus |
| arm_X | 5196604..5196656 | 877..929 | 100 | | Plus |
BS11855.pep Sequence
Translation from 16 to 930
> BS11855.pep
MQRKLHKNIQATGHLRQSGMAMRHLTAATMGVLLPVGVLGFVVLMQLMAS
VRGHGRLMDPPARNAMWRFGYPNPVNYNDNELFCGGYAVQWEQNKGRCGI
CGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDVEVELTANHYGRFEM
FLCPNNNPRQEATQQCFDRYPLLISGSREHRYLIPRDAKKKDIFRYKVRL
PPYVTCTQCVLQWTYYTANMWGTCANGTEAVGCGKAETFRNCADVAIVSN
TGGGIPPPFVNNKSPYLLYYRDYRAPADNNIFPLIVRNATRHARKQGKAK
PPGR*
BS11855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-PB | 285 | CG15786-PA | 1..285 | 20..304 | 1573 | 100 | Plus |
| CG42749-PC | 345 | CG42749-PC | 1..269 | 20..288 | 1482 | 99.6 | Plus |
| CG42749-PD | 345 | CG42749-PD | 1..269 | 20..288 | 1482 | 99.6 | Plus |
| CG42598-PB | 340 | CG42598-PB | 1..226 | 25..249 | 489 | 41.6 | Plus |
| CG41284-PC | 340 | CG41284-PC | 1..226 | 25..249 | 481 | 41.1 | Plus |
