Clone BS11856 Report

Search the DGRC for BS11856

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptVps60-RA
Protein status:BS11856.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11856.3prime Sequence

712 bp (682 high quality bases) assembled on 2006-06-16

> BS11856.3prime
ATGGTCTAGAAAGCTTCTATGTGGTCTTCAGCGATGTCGGAATCTTGGGC
AAGCCGAACTCATCCGTTTCAATGGTGCTCTTTCCAGGGACGATGCTGTC
AGCTCCCGGCTCTCGACTCGGCGCCTCCGGAGCCTTGACCACGTCATCCA
AATAGCTGGTGTCATCGTCCAAGGCAATCTCATCGCCCAGAGCATCCAAC
TCGGCCTGCAGGTCGTCGTCATCCACCTCAGGCATGCCGTACGTGCGGCC
CAGTGCCTCCTGCACCTCGTCCGCCTGCTCAAACATATCAGCCATGTCGT
CTTGGATGTCCTCGATCTGGTCGATGTTGATCTTCTTGTACTCGGTCTTC
ATCTGCTTGACTCCATCCTTCATGGCCGCCACGGTGGCCTGAGTATCCTT
CAAGGATTGCGCCGCATAGTTGGCCTGTTCCATGTTGAACGACTGGTTGC
GCAGAGATTCTGCCTGCTGTTCGTAGGCCTTCTTTTGTTTGAGAACCCGG
AGGGCCTTCTGTTTCACGGAGTTCTTGGCAGGACCTTCTCGCATCTTGGA
CATTTGTTCGCGGTATTTGCGCAGCTCTGCCTCCAGATTACTGATCTTCT
CTTCGATGTTTGTTGCTCGGGCATCGACCCCGGCGATGCAATCGTTTAGA
CTTGGACCCGGCTCCTTGGGCTTACCACGACCAAAAAGGCGATTCATGTC
GACTGATAACTT

BS11856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6259-PA 681 CG6259-RA 1..681 697..17 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 1100 CG6259-RB 240..928 705..17 3415 99.7 Minus
Vps60-RA 980 CG6259-RA 120..808 705..17 3415 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17620419..17620651 80..312 1165 100 Plus
3L 28110227 3L 17620728..17620894 310..476 835 100 Plus
3L 28110227 3L 17621096..17621253 472..629 775 99.4 Plus
3L 28110227 3L 17621308..17621386 627..705 365 97.5 Plus
3L 28110227 3L 17620295..17620359 17..81 325 100 Plus
Blast to na_te.dros performed 2015-02-12 11:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3561..3670 401..293 115 57.3 Minus

BS11856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:50 Download gff for BS11856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:12 Download gff for BS11856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 120..815 12..705 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:24 Download gff for BS11856.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 120..815 12..705 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:24 Download gff for BS11856.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17620288..17620357 12..79 97 <- Plus
3L 17620419..17620649 80..310 100 <- Plus
3L 17620729..17620894 311..476 100 <- Plus
3L 17621310..17621386 629..705 97   Plus
3L 17621101..17621252 477..628 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:12 Download gff for BS11856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17613388..17613457 12..79 97 <- Plus
arm_3L 17613519..17613749 80..310 100 <- Plus
arm_3L 17613829..17613994 311..476 100 <- Plus
arm_3L 17614201..17614352 477..628 100 <- Plus
arm_3L 17614410..17614486 629..705 97   Plus

BS11856.5prime Sequence

711 bp (690 high quality bases) assembled on 2006-06-16

> BS11856.5prime
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACATAGAAG
CTTTCTAGACC

BS11856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6259-PA 681 CG6259-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 1100 CG6259-RB 240..928 9..697 3415 99.7 Plus
Vps60-RA 980 CG6259-RA 120..808 9..697 3415 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17620419..17620651 634..402 1165 100 Minus
3L 28110227 3L 17620728..17620894 404..238 835 100 Minus
3L 28110227 3L 17621096..17621253 242..85 775 99.4 Minus
3L 28110227 3L 17621308..17621386 87..9 365 97.5 Minus
3L 28110227 3L 17620295..17620359 697..633 325 100 Minus
Blast to na_te.dros performed 2015-01-31 10:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3561..3670 313..421 115 57.3 Plus

BS11856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:50 Download gff for BS11856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:33 Download gff for BS11856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 120..815 9..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:15 Download gff for BS11856.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 120..815 9..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:15 Download gff for BS11856.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17620288..17620357 635..702 97 <- Minus
3L 17620419..17620649 404..634 100 <- Minus
3L 17620729..17620894 238..403 100 <- Minus
3L 17621101..17621252 86..237 100 <- Minus
3L 17621310..17621386 9..85 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:33 Download gff for BS11856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17614201..17614352 86..237 100 <- Minus
arm_3L 17614410..17614486 9..85 97   Minus
arm_3L 17613388..17613457 635..702 97 <- Minus
arm_3L 17613519..17613749 404..634 100 <- Minus
arm_3L 17613829..17613994 238..403 100 <- Minus

BS11856.complete Sequence

713 bp assembled on 2006-11-01

GenBank Submission: FJ636997

> BS11856.complete
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACATAGAAG
CTTTCTAGACCAT

BS11856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 681 CG6259-PB 1..681 17..697 3405 100 Plus
Vps60-RA 681 CG6259-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-RB 1100 CG6259-RB 240..928 9..697 3415 99.7 Plus
Vps60-RA 980 CG6259-RA 120..808 9..697 3415 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17620419..17620651 634..402 1165 100 Minus
3L 28110227 3L 17620728..17620894 404..238 835 100 Minus
3L 28110227 3L 17621096..17621253 242..85 775 99.4 Minus
3L 28110227 3L 17621308..17621386 87..9 365 97.5 Minus
3L 28110227 3L 17620295..17620359 697..633 325 100 Minus
Blast to na_te.dros performed 2014-11-27 19:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3561..3670 313..421 115 57.3 Plus

BS11856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:16 Download gff for BS11856.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:14 Download gff for BS11856.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 113..808 9..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:01 Download gff for BS11856.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 128..808 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:16 Download gff for BS11856.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 113..808 9..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:38 Download gff for BS11856.complete
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 128..808 17..697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:38 Download gff for BS11856.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17620295..17620357 635..697 100 <- Minus
3L 17620419..17620649 404..634 100 <- Minus
3L 17620729..17620894 238..403 100 <- Minus
3L 17621101..17621252 86..237 100 <- Minus
3L 17621310..17621378 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:01 Download gff for BS11856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17613395..17613457 635..697 100 <- Minus
arm_3L 17613519..17613749 404..634 100 <- Minus
arm_3L 17613829..17613994 238..403 100 <- Minus
arm_3L 17614201..17614352 86..237 100 <- Minus
arm_3L 17614410..17614478 17..85 100   Minus

BS11856.pep Sequence

Translation from 16 to 696

> BS11856.pep
MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS
KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK
DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG
RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD
SIVPGKSTIETDEFGLPKIPTSLKTT*

BS11856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-PB 226 CG6259-PB 1..226 1..226 1144 100 Plus
Vps60-PA 226 CG6259-PA 1..226 1..226 1144 100 Plus
shrb-PA 226 CG8055-PA 4..193 5..196 191 26.7 Plus