Clone Sequence Records
BS11856.3prime Sequence
712 bp (682 high quality bases) assembled on 2006-06-16
> BS11856.3prime
ATGGTCTAGAAAGCTTCTATGTGGTCTTCAGCGATGTCGGAATCTTGGGC
AAGCCGAACTCATCCGTTTCAATGGTGCTCTTTCCAGGGACGATGCTGTC
AGCTCCCGGCTCTCGACTCGGCGCCTCCGGAGCCTTGACCACGTCATCCA
AATAGCTGGTGTCATCGTCCAAGGCAATCTCATCGCCCAGAGCATCCAAC
TCGGCCTGCAGGTCGTCGTCATCCACCTCAGGCATGCCGTACGTGCGGCC
CAGTGCCTCCTGCACCTCGTCCGCCTGCTCAAACATATCAGCCATGTCGT
CTTGGATGTCCTCGATCTGGTCGATGTTGATCTTCTTGTACTCGGTCTTC
ATCTGCTTGACTCCATCCTTCATGGCCGCCACGGTGGCCTGAGTATCCTT
CAAGGATTGCGCCGCATAGTTGGCCTGTTCCATGTTGAACGACTGGTTGC
GCAGAGATTCTGCCTGCTGTTCGTAGGCCTTCTTTTGTTTGAGAACCCGG
AGGGCCTTCTGTTTCACGGAGTTCTTGGCAGGACCTTCTCGCATCTTGGA
CATTTGTTCGCGGTATTTGCGCAGCTCTGCCTCCAGATTACTGATCTTCT
CTTCGATGTTTGTTGCTCGGGCATCGACCCCGGCGATGCAATCGTTTAGA
CTTGGACCCGGCTCCTTGGGCTTACCACGACCAAAAAGGCGATTCATGTC
GACTGATAACTT
BS11856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6259-PA | 681 | CG6259-RA | 1..681 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 1100 | CG6259-RB | 240..928 | 705..17 | 3415 | 99.7 | Minus |
Vps60-RA | 980 | CG6259-RA | 120..808 | 705..17 | 3415 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17620419..17620651 | 80..312 | 1165 | 100 | Plus |
3L | 28110227 | 3L | 17620728..17620894 | 310..476 | 835 | 100 | Plus |
3L | 28110227 | 3L | 17621096..17621253 | 472..629 | 775 | 99.4 | Plus |
3L | 28110227 | 3L | 17621308..17621386 | 627..705 | 365 | 97.5 | Plus |
3L | 28110227 | 3L | 17620295..17620359 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 401..293 | 115 | 57.3 | Minus |
BS11856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:50 Download gff for
BS11856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:12 Download gff for
BS11856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 120..815 | 12..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:24 Download gff for
BS11856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps60-RA | 120..815 | 12..705 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:24 Download gff for
BS11856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17620288..17620357 | 12..79 | 97 | <- | Plus |
3L | 17620419..17620649 | 80..310 | 100 | <- | Plus |
3L | 17620729..17620894 | 311..476 | 100 | <- | Plus |
3L | 17621310..17621386 | 629..705 | 97 | | Plus |
3L | 17621101..17621252 | 477..628 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:12 Download gff for
BS11856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17613388..17613457 | 12..79 | 97 | <- | Plus |
arm_3L | 17613519..17613749 | 80..310 | 100 | <- | Plus |
arm_3L | 17613829..17613994 | 311..476 | 100 | <- | Plus |
arm_3L | 17614201..17614352 | 477..628 | 100 | <- | Plus |
arm_3L | 17614410..17614486 | 629..705 | 97 | | Plus |
BS11856.5prime Sequence
711 bp (690 high quality bases) assembled on 2006-06-16
> BS11856.5prime
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACATAGAAG
CTTTCTAGACC
BS11856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6259-PA | 681 | CG6259-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 1100 | CG6259-RB | 240..928 | 9..697 | 3415 | 99.7 | Plus |
Vps60-RA | 980 | CG6259-RA | 120..808 | 9..697 | 3415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17620419..17620651 | 634..402 | 1165 | 100 | Minus |
3L | 28110227 | 3L | 17620728..17620894 | 404..238 | 835 | 100 | Minus |
3L | 28110227 | 3L | 17621096..17621253 | 242..85 | 775 | 99.4 | Minus |
3L | 28110227 | 3L | 17621308..17621386 | 87..9 | 365 | 97.5 | Minus |
3L | 28110227 | 3L | 17620295..17620359 | 697..633 | 325 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 10:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 313..421 | 115 | 57.3 | Plus |
BS11856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:50 Download gff for
BS11856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:33 Download gff for
BS11856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 120..815 | 9..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:15 Download gff for
BS11856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps60-RA | 120..815 | 9..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:15 Download gff for
BS11856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17620288..17620357 | 635..702 | 97 | <- | Minus |
3L | 17620419..17620649 | 404..634 | 100 | <- | Minus |
3L | 17620729..17620894 | 238..403 | 100 | <- | Minus |
3L | 17621101..17621252 | 86..237 | 100 | <- | Minus |
3L | 17621310..17621386 | 9..85 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:33 Download gff for
BS11856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17614201..17614352 | 86..237 | 100 | <- | Minus |
arm_3L | 17614410..17614486 | 9..85 | 97 | | Minus |
arm_3L | 17613388..17613457 | 635..702 | 97 | <- | Minus |
arm_3L | 17613519..17613749 | 404..634 | 100 | <- | Minus |
arm_3L | 17613829..17613994 | 238..403 | 100 | <- | Minus |
BS11856.complete Sequence
713 bp assembled on 2006-11-01
GenBank Submission: FJ636997
> BS11856.complete
GAAGTTATCAGTCGACATGAATCGCCTTTTTGGTCGTGGTAAGCCCAAGG
AGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCGAGCA
ACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCAAATA
CCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCCGTGA
AACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACAGCAG
GCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACTATGC
GGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAGGATG
GAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATC
GAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACGAGGT
GCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGACGACG
ACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGACGAT
GACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGAGTCG
AGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAAACGG
ATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACATAGAAG
CTTTCTAGACCAT
BS11856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 681 | CG6259-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
Vps60-RA | 681 | CG6259-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-RB | 1100 | CG6259-RB | 240..928 | 9..697 | 3415 | 99.7 | Plus |
Vps60-RA | 980 | CG6259-RA | 120..808 | 9..697 | 3415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17620419..17620651 | 634..402 | 1165 | 100 | Minus |
3L | 28110227 | 3L | 17620728..17620894 | 404..238 | 835 | 100 | Minus |
3L | 28110227 | 3L | 17621096..17621253 | 242..85 | 775 | 99.4 | Minus |
3L | 28110227 | 3L | 17621308..17621386 | 87..9 | 365 | 97.5 | Minus |
3L | 28110227 | 3L | 17620295..17620359 | 697..633 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 313..421 | 115 | 57.3 | Plus |
BS11856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:16 Download gff for
BS11856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:14 Download gff for
BS11856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 113..808 | 9..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:01 Download gff for
BS11856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 128..808 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:16 Download gff for
BS11856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6259-RA | 113..808 | 9..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:38 Download gff for
BS11856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps60-RA | 128..808 | 17..697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:38 Download gff for
BS11856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17620295..17620357 | 635..697 | 100 | <- | Minus |
3L | 17620419..17620649 | 404..634 | 100 | <- | Minus |
3L | 17620729..17620894 | 238..403 | 100 | <- | Minus |
3L | 17621101..17621252 | 86..237 | 100 | <- | Minus |
3L | 17621310..17621378 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:01 Download gff for
BS11856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17613395..17613457 | 635..697 | 100 | <- | Minus |
arm_3L | 17613519..17613749 | 404..634 | 100 | <- | Minus |
arm_3L | 17613829..17613994 | 238..403 | 100 | <- | Minus |
arm_3L | 17614201..17614352 | 86..237 | 100 | <- | Minus |
arm_3L | 17614410..17614478 | 17..85 | 100 | | Minus |
BS11856.pep Sequence
Translation from 16 to 696
> BS11856.pep
MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS
KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK
DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG
RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD
SIVPGKSTIETDEFGLPKIPTSLKTT*
BS11856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps60-PB | 226 | CG6259-PB | 1..226 | 1..226 | 1144 | 100 | Plus |
Vps60-PA | 226 | CG6259-PA | 1..226 | 1..226 | 1144 | 100 | Plus |
shrb-PA | 226 | CG8055-PA | 4..193 | 5..196 | 191 | 26.7 | Plus |