BS11857.complete Sequence
1565 bp assembled on 2008-08-14
GenBank Submission: FJ636998
> BS11857.complete
GAAGTTATCAGTCGACATGATCACGGAAACTCTCCTGACGATCTGCGCGG
CGGTGTTCCTCTGCCTTTCGTATCGATATGCAGTGGGTCGACCCTCCGGT
TTTCCACCCGGTCCTCCAAAGATTCCGCTTTTCGGCAGCTACCTCTTCAT
GTTGATCATCAACTTTAAGTATCTGCACAAGGCGGCTCTGACCCTCAGTC
GGTGGTACAAGTCGGATATCATTGGACTGCATGTGGGTCCTTTTCCGGTG
GCCGTTGTCCACAGTGCGGATGGAGTGCGCGAGATCCTCAATAATCAGGT
GTTCGATGGACGGCCGCAGCTTTTCGTGGCCGCCATGCGCGATCCCGGCC
AAGATGTGCGAGGGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAA
CGTCGCTTCATCCTGCGCTACTTAAGAGACTTTGGTTTCGGACGACGATT
CGACCAACTGGAGCTGGTCATCCAGGAGCAGTTGAACGACATGCTGGATC
TGATCCGCAACGGTCCAAAGTATCCGCATGAGCACGAGATGGTGAAATCC
GGAGGATATCGCGTGCTTCTGCCGCTGCTCTTTAATCCCTTCTCGGCCAA
CGCTCACTTTTACATTGTCTACAATGAGTGCCTGAGTCGCGAGGAAATGG
GCAAATTGGTGAAGCTCTGCCAGATGGGCATACAGTTCCAGCGGAATGCG
GACGACTACGGCAAAATGTTGAGCATTATACCGTGGATTCGGCACATTTG
GCCCGAATGGAGTGGCTACAACAAGCTAAACGAGTCCAACCTATTCGTGC
GGCAGTTCTTTGCCGACTTTGTGGATAAGTATTTGGACAGCTACGAAGAG
GGTGTGGAGCGCAACTTCATGGATGTCTACATAGCTGAAATGCGCCGAGG
TCCGGGCTACGGTTTCAATCGGGATCAATTGATCATGGGCCTGGTGGACT
TCTCCTTTCCGGCCTTCACTGCCATCGGAGTGCAGCTATCGCTACTCGTC
CAGTATCTCATGCTATATCCGGCAGTTCTGCGGCGGGTTCAGAACGAGAT
CGACGAGGTGGTGGGATGCGGACGATTGCCCAACCTGGAGGATCGCAAGA
ACTTGCCCTTCACGGAGGCCACCATTCGCGAAGGTCTGCGCATCGAGACG
CTGGTTCCCTCGGATGTCCCGCACAAGGCGCTGGAGGACACCGAATTGCT
GGGCTACCGGATACCCAAGGACACCATTGTCGTGCCCAGCCTGTATGCCT
TCCACTCGGACGCCCGTATTTGGTCGGATCCGGAGCAGTTCCGGCCGGAG
AGATTCCTGGACGCGGATGGCAAGCTCTGCCTGAAACTGGATGTCTCGCT
GCCCTTTGGAGCGGGAAAACGGCTCTGTGCCGGCGAGACATTTGCGCGCA
ACATGCTCTTCCTGGTGACAGCGACCATGTGCCAGCACTTTGACTTCGTC
CTGGGCCCCAATGATCGGTTGCCCGATCTCTCCCAGAACCTCAATGGACT
GATTATTTCGCCACCAGATTTCTGGCTGCAACTACAGGATCGGCATTGAA
AGCTTTCTAGACCAT
BS11857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp304a1-RA | 1533 | CG7241-PA | 1..1533 | 17..1549 | 7650 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp304a1-RA | 1716 | CG7241-RA | 33..1568 | 17..1552 | 7665 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12964518..12965377 | 361..1220 | 4300 | 100 | Plus |
| 3R | 32079331 | 3R | 12965441..12965775 | 1218..1552 | 1675 | 100 | Plus |
| 3R | 32079331 | 3R | 12963977..12964230 | 110..363 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 12963823..12963918 | 17..112 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:04:05 has no hits.
BS11857.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:15 Download gff for
BS11857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 21..1562 | 12..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:47 Download gff for
BS11857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 33..1564 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:44 Download gff for
BS11857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 27..1558 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:51 Download gff for
BS11857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp304a1-RA | 33..1564 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:51 Download gff for
BS11857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12963823..12963916 | 17..110 | 98 | -> | Plus |
| 3R | 12963978..12964229 | 111..362 | 100 | -> | Plus |
| 3R | 12964520..12965376 | 363..1219 | 100 | -> | Plus |
| 3R | 12965443..12965771 | 1220..1548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:47 Download gff for
BS11857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8789545..8789638 | 17..110 | 98 | -> | Plus |
| arm_3R | 8789700..8789951 | 111..362 | 100 | -> | Plus |
| arm_3R | 8790242..8791098 | 363..1219 | 100 | -> | Plus |
| arm_3R | 8791165..8791493 | 1220..1548 | 100 | | Plus |
BS11857.pep Sequence
Translation from 16 to 1548
> BS11857.pep
MITETLLTICAAVFLCLSYRYAVGRPSGFPPGPPKIPLFGSYLFMLIINF
KYLHKAALTLSRWYKSDIIGLHVGPFPVAVVHSADGVREILNNQVFDGRP
QLFVAAMRDPGQDVRGIFFQDGPLWKEQRRFILRYLRDFGFGRRFDQLEL
VIQEQLNDMLDLIRNGPKYPHEHEMVKSGGYRVLLPLLFNPFSANAHFYI
VYNECLSREEMGKLVKLCQMGIQFQRNADDYGKMLSIIPWIRHIWPEWSG
YNKLNESNLFVRQFFADFVDKYLDSYEEGVERNFMDVYIAEMRRGPGYGF
NRDQLIMGLVDFSFPAFTAIGVQLSLLVQYLMLYPAVLRRVQNEIDEVVG
CGRLPNLEDRKNLPFTEATIREGLRIETLVPSDVPHKALEDTELLGYRIP
KDTIVVPSLYAFHSDARIWSDPEQFRPERFLDADGKLCLKLDVSLPFGAG
KRLCAGETFARNMLFLVTATMCQHFDFVLGPNDRLPDLSQNLNGLIISPP
DFWLQLQDRH*
BS11857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp304a1-PA | 510 | CG7241-PA | 1..510 | 1..510 | 2716 | 100 | Plus |
| Cyp305a1-PA | 504 | CG8733-PA | 4..503 | 6..509 | 543 | 29.4 | Plus |
| Cyp18a1-PB | 538 | CG6816-PB | 54..520 | 30..509 | 496 | 28.9 | Plus |
| Cyp18a1-PA | 538 | CG6816-PA | 54..520 | 30..509 | 496 | 28.9 | Plus |
| Cyp303a1-PB | 503 | CG4163-PB | 4..475 | 5..481 | 490 | 30.7 | Plus |
