BS11858.complete Sequence
1607 bp assembled on 2007-10-26
> BS11858.complete
GAAGTTATCAGTCGACATGGTAAAGAGTTGCCTGATCTTGTGCTTCTTCG
CTCTCCTGGTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAGCAC
GCCCAACATCCCCGTCTGCAATCATCACGCGACTTCGAGGCCCTCGACGA
GGAGCTGGACACACGATTCTGGCACGATAAGGCCCAATCGATTCTGGCCG
ATAAGCTGGCCGGCCATAAAAAGCTCAACGAGAATCGCGCCAAGAACGTG
ATCCTATTTTTGGGCGATGGCATGTCCGTTCACACGATCGCGGCCACACG
TGCTTTCATGGGCGATAGCAACAAGCAGGTCTTCTTCGAGAAGTTCCCCT
ACTTGGGTCTGTCCAAGACGTATGCCGTCAACGAGCGTACTCCGGACTCG
GCCAACACTGCTACGGCCTATTTGACCGGAGTCAAGGCCAACTATGGCAC
CATTGGAGTCAATGCCCAGGTGCAGAGGGGCGACTGTGTGACCAATTCGA
GTAGCCATGTCCAGAGCATTGGTCAGTGGGCCCAGGAGGCCGGCAAGTGG
GCCGGTTTGGTGACCACCGCCCGGGTGACACACGCTTCTCCAGCCGGAGT
TTATGCCCATGTTTCCGAACGGAATTGGGAGCACGATGGTGAAATCATCA
GCTCCAAATGCAGTCCCGACGTCAACACCGATATTGCCCGGCAGCTGGTC
GAGTGGCCAGTGGGTCAGGAACTACGCGTCATCATGGGCGGCGGTCGATC
CTATTTTCGGGATCAGTCCCAGCACGATGAGACTGGCGTTTCGGGCTTGC
GAACCGATGGACGCGATCTGATCAGCGATTGGCGAGAGATCAAGAAACAG
CAGGGAGCGGAGGGCAAGTACGTCTGGTCACTTAAGGGCCTGAAGGAAAC
GGATATTAGCAAGACGGATTACCTTCTCGGTCTCTTCGACACCTCCCATC
TGCCCTACCATGGCGATCGTCGCCGTACCCATTATGAAGATGCAGAGCCA
TCCCTTTCCGACATGACAGAAGCGGCCATCAAGATGCTCAGCAAGAACGA
GGAGGGTTACTTCCTCTTCGTGGAGAGTGGACGCATTGATATGGCCCATC
ACGCCACCAAGGCGATGAAGGCTCTGGAGGACACCGAAGAATTCGCGGCA
GCCGTGGAACTGGCTAGGAAAATGACCGACGAGGAGGACACGCTGATTGT
GGTGACATCGGATCACTCGCACACCATGTCTATCAACGGCTATCCGTACC
GTCGACAGAACATCCTTTCCCTTGCTCCCAATCTGGCTGATGATGAGCTT
CCCTTTACCATCTTGTCGTATGCCAATGGTCCAGGATTTGATGATACCTA
CAGCACTAAAGATGGACGCATTGATCTTTCCCATGCGGACACCACAAGCG
CAGAGTTTGAGTTCCAGGCCACGGTTCCCTTGAGCAGCGAAACCCACGGC
GCTGAGGATGTGGGTGTCTTTGCCTCCGGTCCCTTCGAGCACCTGTTCAC
CGGCAATTATGAGCAGAGTGCCATCCCAGCCATGATGGCTTATGCAGCCA
ACATTGGACCATTTGCCAAGGACAAGATTAATGAGCAATAAAAGCTTTCT
AGACCAT
BS11858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10592-RA | 1575 | CG10592-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
| CG10827-RA | 1569 | CG10827-PA | 542..626 | 525..609 | 185 | 81.2 | Plus |
| CG5150-RB | 1554 | CG5150-PB | 1128..1191 | 1162..1225 | 185 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10592-RA | 1749 | CG10592-RA | 63..1638 | 17..1592 | 7880 | 100 | Plus |
| CG10827-RA | 1674 | CG10827-RA | 558..642 | 525..609 | 185 | 81.2 | Plus |
| CG5150-RB | 1881 | CG5150-RB | 1172..1235 | 1162..1225 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5593267..5594412 | 1246..101 | 5730 | 100 | Minus |
| 3L | 28110227 | 3L | 5592852..5593198 | 1592..1246 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 5595126..5595210 | 101..17 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 5596713..5596776 | 1162..1225 | 185 | 85.9 | Plus |
| 3R | 32079331 | 3R | 21006349..21006433 | 609..525 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:39:20 has no hits.
BS11858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:31 Download gff for
BS11858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 1..1575 | 17..1591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:23 Download gff for
BS11858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 63..1638 | 17..1592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:29:00 Download gff for
BS11858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 63..1635 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:41 Download gff for
BS11858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 63..1635 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:29 Download gff for
BS11858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 63..1635 | 17..1589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:29 Download gff for
BS11858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5592855..5593197 | 1247..1589 | 100 | <- | Minus |
| 3L | 5593267..5594411 | 102..1246 | 100 | <- | Minus |
| 3L | 5595126..5595210 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:29:00 Download gff for
BS11858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5585955..5586297 | 1247..1589 | 100 | <- | Minus |
| arm_3L | 5586367..5587511 | 102..1246 | 100 | <- | Minus |
| arm_3L | 5588226..5588310 | 17..101 | 100 | | Minus |
BS11858.pep Sequence
Translation from 16 to 1590
> BS11858.pep
MVKSCLILCFFALLVIQARSDLADDQEHAQHPRLQSSRDFEALDEELDTR
FWHDKAQSILADKLAGHKKLNENRAKNVILFLGDGMSVHTIAATRAFMGD
SNKQVFFEKFPYLGLSKTYAVNERTPDSANTATAYLTGVKANYGTIGVNA
QVQRGDCVTNSSSHVQSIGQWAQEAGKWAGLVTTARVTHASPAGVYAHVS
ERNWEHDGEIISSKCSPDVNTDIARQLVEWPVGQELRVIMGGGRSYFRDQ
SQHDETGVSGLRTDGRDLISDWREIKKQQGAEGKYVWSLKGLKETDISKT
DYLLGLFDTSHLPYHGDRRRTHYEDAEPSLSDMTEAAIKMLSKNEEGYFL
FVESGRIDMAHHATKAMKALEDTEEFAAAVELARKMTDEEDTLIVVTSDH
SHTMSINGYPYRRQNILSLAPNLADDELPFTILSYANGPGFDDTYSTKDG
RIDLSHADTTSAEFEFQATVPLSSETHGAEDVGVFASGPFEHLFTGNYEQ
SAIPAMMAYAANIGPFAKDKINEQ*
BS11858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10592-PA | 524 | CG10592-PA | 1..524 | 1..524 | 2736 | 100 | Plus |
| CG1809-PA | 515 | CG1809-PA | 5..515 | 11..517 | 1488 | 57.9 | Plus |
| CG5150-PB | 517 | CG5150-PB | 29..510 | 27..514 | 1124 | 48.1 | Plus |
| CG5150-PA | 517 | CG5150-PA | 29..510 | 27..514 | 1124 | 48.1 | Plus |
| CG10827-PA | 522 | CG10827-PA | 33..515 | 26..514 | 1104 | 46.8 | Plus |
