Clone Sequence Records
BS11859.3prime Sequence
618 bp (618 high quality bases) assembled on 2006-06-16
> BS11859.3prime
ATGGTCTAGAAAGCTTCTAACGAATGGTGGCGAACTTCTGAAAGTCGACC
GTTCCAAACTTGCCAAACAGTTCCAGAGGATAGTGCTTGCCCTCGACGGG
CGCATGGATGCGGATCTGGCGCATGTGGGTGTCCCTGCCATTCTGGTGGT
TCGAGATCACAGCAATCTGAAGCATGAAGGTGCGTATGGACTTGACGTTC
CCATCCTTAATGGGTATCTGCACCCAGCCGGTGGGTTCGGTCAGGTCCAT
CACCTGCAGCTCCTGCAAGTCGTTGAAGTTCGTTCCAGATCGTATGGAGA
TCCTTGATGGCGTGTAACTCTCGTCCAGCTTGTAATCCGTGTATATGTAA
ATCTGACTGATGTTCGTACGCTTGTGGAATTGAATGTTGACCAGGTGGGG
AAGCTGACCGTCCGACTGCCAATAAGTATCCATGATGTTGTCTCGCAAAC
GCTCTACACCAAATCCCGGCTTGCAGGAGGAGAGGCTCCAAACAGCCTGC
GCGCCCACTTCCCGCACAAAGCCTAGGCGCTCCTCGGCCAGGGGGTCCTC
TTCGCTGCTTGGGGGCGGGTTGGCGGTTATATCCTCATCCATTGAGGCTG
CCATGTCGACTGATAACT
BS11859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11419-PA | 588 | CG11419-RA | 1..588 | 604..17 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 867 | CG11419-RA | 78..665 | 604..17 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17517463..17517912 | 17..466 | 2250 | 100 | Plus |
| 2R | 25286936 | 2R | 17517970..17518109 | 465..604 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:06:22 has no hits.
BS11859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:51 Download gff for
BS11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:53 Download gff for
BS11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..675 | 10..604 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:45 Download gff for
BS11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..675 | 10..604 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:45 Download gff for
BS11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17517453..17517911 | 10..465 | 99 | <- | Plus |
| 2R | 17517971..17518109 | 466..604 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:53 Download gff for
BS11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404958..13405416 | 10..465 | 99 | <- | Plus |
| arm_2R | 13405476..13405614 | 466..604 | 100 | | Plus |
BS11859.5prime Sequence
618 bp (618 high quality bases) assembled on 2006-06-16
> BS11859.5prime
GAAGTTATCAGTCGACATGGCAGCCTCAATGGATGAGGATATAACCGCCA
ACCCGCCCCCAAGCAGCGAAGAGGACCCCCTGGCCGAGGAGCGCCTAGGC
TTTGTGCGGGAAGTGGGCGCGCAGGCTGTTTGGAGCCTCTCCTCCTGCAA
GCCGGGATTTGGTGTAGAGCGTTTGCGAGACAACATCATGGATACTTATT
GGCAGTCGGACGGTCAGCTTCCCCACCTGGTCAACATTCAATTCCACAAG
CGTACGAACATCAGTCAGATTTACATATACACGGATTACAAGCTGGACGA
GAGTTACACGCCATCAAGGATCTCCATACGATCTGGAACGAACTTCAACG
ACTTGCAGGAGCTGCAGGTGATGGACCTGACCGAACCCACCGGCTGGGTG
CAGATACCCATTAAGGATGGGAACGTCAAGTCCATACGCACCTTCATGCT
TCAGATTGCTGTGATCTCGAACCACCAGAATGGCAGGGACACCCACATGC
GCCAGATCCGCATCCATGCGCCCGTCGAGGGCAAGCACTATCCTCTGGAA
CTGTTTGGCAAGTTTGGAACGGTCGACTTTCAGAAGTTCGCCACCATTCG
TTAGAAGCTTTCTAGACC
BS11859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11419-PA | 588 | CG11419-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 867 | CG11419-RA | 78..665 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17517463..17517912 | 604..155 | 2250 | 100 | Minus |
| 2R | 25286936 | 2R | 17517970..17518109 | 156..17 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:25:45 has no hits.
BS11859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:51 Download gff for
BS11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:29 Download gff for
BS11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..675 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:53 Download gff for
BS11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..675 | 17..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:53 Download gff for
BS11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17517453..17517911 | 156..611 | 99 | <- | Minus |
| 2R | 17517971..17518109 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:29 Download gff for
BS11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404958..13405416 | 156..611 | 99 | <- | Minus |
| arm_2R | 13405476..13405614 | 17..155 | 100 | | Minus |
BS11859.complete Sequence
620 bp assembled on 2006-11-01
GenBank Submission: FJ636999
> BS11859.complete
GAAGTTATCAGTCGACATGGCAGCCTCAATGGATGAGGATATAACCGCCA
ACCCGCCCCCAAGCAGCGAAGAGGACCCCCTGGCCGAGGAGCGCCTAGGC
TTTGTGCGGGAAGTGGGCGCGCAGGCTGTTTGGAGCCTCTCCTCCTGCAA
GCCGGGATTTGGTGTAGAGCGTTTGCGAGACAACATCATGGATACTTATT
GGCAGTCGGACGGTCAGCTTCCCCACCTGGTCAACATTCAATTCCACAAG
CGTACGAACATCAGTCAGATTTACATATACACGGATTACAAGCTGGACGA
GAGTTACACGCCATCAAGGATCTCCATACGATCTGGAACGAACTTCAACG
ACTTGCAGGAGCTGCAGGTGATGGACCTGACCGAACCCACCGGCTGGGTG
CAGATACCCATTAAGGATGGGAACGTCAAGTCCATACGCACCTTCATGCT
TCAGATTGCTGTGATCTCGAACCACCAGAATGGCAGGGACACCCACATGC
GCCAGATCCGCATCCATGCGCCCGTCGAGGGCAAGCACTATCCTCTGGAA
CTGTTTGGCAAGTTTGGAACGGTCGACTTTCAGAAGTTCGCCACCATTCG
TTAGAAGCTTTCTAGACCAT
BS11859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 588 | CG11419-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 867 | CG11419-RA | 78..665 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17517463..17517912 | 604..155 | 2250 | 100 | Minus |
| 2R | 25286936 | 2R | 17517970..17518109 | 156..17 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:20:19 has no hits.
BS11859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:38 Download gff for
BS11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:00 Download gff for
BS11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-RA | 75..672 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:43 Download gff for
BS11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..665 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:38 Download gff for
BS11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-RA | 75..672 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:13 Download gff for
BS11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..665 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:13 Download gff for
BS11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17517463..17517911 | 156..604 | 100 | <- | Minus |
| 2R | 17517971..17518109 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:43 Download gff for
BS11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404968..13405416 | 156..604 | 100 | <- | Minus |
| arm_2R | 13405476..13405614 | 17..155 | 100 | | Minus |
BS11859.pep Sequence
Translation from 16 to 603
> BS11859.pep
MAASMDEDITANPPPSSEEDPLAEERLGFVREVGAQAVWSLSSCKPGFGV
ERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPS
RISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKSIRTFMLQIAVI
SNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIR*
BS11859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-PA | 195 | CG11419-PA | 1..195 | 1..195 | 1029 | 100 | Plus |
