BS11860.complete Sequence
1577 bp assembled on 2007-10-17
GenBank Submission: FJ637000
> BS11860.complete
GAAGTTATCAGTCGACATGGAGGACACAAAAGCTCCAGCGGCAGCGCAGG
CGCAAAGTCATCCTTTGGAGGATGTGTCCCTCAATGGGAACGATGACGAC
AAGCAGACGCCCAAAAATTGGGTTAAATTCGACGACGAAGCGGATAGCGG
TGAAAAAAACAATAACAGTAACGACGGCGATGCCACACAGCAGCAACAAC
AACAAAACAAGTTAACTCTGCCGCCACCGCCGTCGGTGGTTAGTAGCAAC
AACAACAGGAGGGCGCGCTCGCGCAGTCCGTCCGCTACAGTAACAACAAC
CACACCTGTCCAGCGCCCGGCAGTTTCCTCGACCACAGCTGCGACACCGG
GCGAAGTGCAGCCGCATGCCCCTCCGCCGGATGTGGCGCCCGCTGTTCTG
ACAACCGAGAGCACGCACGTTAATCTGAGTGCATCCGGCAGTGGCATCGT
CAGCGGAGCAAGTGCGAATGCAAGTGCGAGTGGATACGCACCTGGCCCGG
TCCGCCATACCCCGCAGCTACCAAACCAAAAAGCCGCCGCCGCCCCCTCT
CTATCGTCCGCTGGCGCGGCATCCTCCGGACATCAGCATAATGGAGGTGG
CGCCAACGGAACTGGAATTAGCCAGCCGGCGGACCAGGGATCCGGGATGC
GCACAATCGAATTGTCAACGGGTCGTATACGCGAGGGATTCGCAAATGGC
GATGTGATTGTCACACTTCTGCCGGCCAACACGAAGTGGCCGTGGATAAC
CCCAGCCATATTCCGTCCGGAACTGGTGCCCGAGGAGCTGATGGCTCAGG
GTCTGACGCTCACTGTGGAGGACTATGTGAACGCGATGGAGACGCTAGTA
AACGACTACCGCTTCACCGTGTACAACATCTGCTACAAGCGCATCCTGGT
CTGCTGGATCCTGTTCGCATTTACGGTTTTGCTGGCCCTGCTCTTTTCCG
GACTGCAGGGTGTGGCCCTGTTCGCCCTGGGAGTGGGCTGGCTATTCCTG
AACGCGGCGGCCATCTTCCTGTGCATGTGGGTGAAGCTGCGCTTGTCGCG
CGGCCTTGAGAAGTGCCTGGCAAGAGTGAACCGGCAGCTAATGCGCCACA
AGATCCTGCTGGTGCTGGACGATCGGGGCCGCATCTCGTGCCACAAGGTC
AACCTGTGCTTCATGTACTTTGATGCCACACAGTGCGTTAATTTCCTGAA
CGAGTTCCTGGAGCATACGGAGCAAACTGGTGGCGATGCCATCAAGGCGG
GCTGGGAGGCGAAGCTGGACATTGACCTAAACGATATTGTTATCCAGGGC
AGTCAGCCGGTGCGAATGCCCCGCAAGCAGGCCGTGGCCCAGGAGCTGTT
TCTGAGCTACCTGCAGCGCTGGGGCAAGGACTTCCTGCGCCGCCGTCTGG
ATTGGACTGTCCAGGAGGCCGGCGTCCACGAGACGCCCCGCCATCTGCAA
TCGTCCATCTGTCCGTGCCAATACGAGGAGGAGTTGTTGCGCAACAAGAT
CAAGATCAGCCTGCAGCACCGCCACTGCTGCGGCATCAACTGCATGGGCT
GCTGGCTCTAAAAGCTTTCTAGACCAT
BS11860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18507-RA | 1545 | CG18507-PA | 1..1545 | 17..1561 | 7710 | 99.9 | Plus |
| CG18507-RE | 1533 | CG18507-PE | 1..1315 | 17..1331 | 6560 | 99.9 | Plus |
| CG18507-RD | 1533 | CG18507-PD | 1..1315 | 17..1331 | 6560 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18507-RA | 1915 | CG18507-RA | 302..1846 | 17..1561 | 7710 | 99.9 | Plus |
| CG18507-RE | 2004 | CG18507-RE | 302..1616 | 17..1331 | 6560 | 99.9 | Plus |
| CG18507-RD | 2041 | CG18507-RD | 302..1616 | 17..1331 | 6560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13668863..13669386 | 808..1331 | 2605 | 99.8 | Plus |
| 2L | 23513712 | 2L | 13667971..13668353 | 310..692 | 1915 | 100 | Plus |
| 2L | 23513712 | 2L | 13665826..13666122 | 17..313 | 1485 | 100 | Plus |
| 2L | 23513712 | 2L | 13669543..13669775 | 1329..1561 | 1165 | 100 | Plus |
| 2L | 23513712 | 2L | 13668689..13668805 | 692..808 | 585 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2306..2338 | 67..99 | 120 | 84.8 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4358..4389 | 68..99 | 115 | 84.4 | Plus |
BS11860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:32 Download gff for
BS11860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RA | 1..1545 | 17..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:25 Download gff for
BS11860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RA | 286..1848 | 5..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:15 Download gff for
BS11860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RA | 302..1844 | 17..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:33 Download gff for
BS11860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RA | 299..1841 | 17..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:34 Download gff for
BS11860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RA | 302..1844 | 17..1559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:34 Download gff for
BS11860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13665826..13666122 | 17..313 | 100 | -> | Plus |
| 2L | 13667975..13668353 | 314..692 | 100 | -> | Plus |
| 2L | 13668690..13668805 | 693..808 | 100 | -> | Plus |
| 2L | 13668864..13669385 | 809..1330 | 99 | -> | Plus |
| 2L | 13669545..13669773 | 1331..1559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:15 Download gff for
BS11860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13665826..13666122 | 17..313 | 100 | -> | Plus |
| arm_2L | 13667975..13668353 | 314..692 | 100 | -> | Plus |
| arm_2L | 13668690..13668805 | 693..808 | 100 | -> | Plus |
| arm_2L | 13668864..13669385 | 809..1330 | 99 | -> | Plus |
| arm_2L | 13669545..13669773 | 1331..1559 | 100 | | Plus |
BS11860.pep Sequence
Translation from 16 to 1560
> BS11860.pep
MEDTKAPAAAQAQSHPLEDVSLNGNDDDKQTPKNWVKFDDEADSGEKNNN
SNDGDATQQQQQQNKLTLPPPPSVVSSNNNRRARSRSPSATVTTTTPVQR
PAVSSTTAATPGEVQPHAPPPDVAPAVLTTESTHVNLSASGSGIVSGASA
NASASGYAPGPVRHTPQLPNQKAAAAPSLSSAGAASSGHQHNGGGANGTG
ISQPADQGSGMRTIELSTGRIREGFANGDVIVTLLPANTKWPWITPAIFR
PELVPEELMAQGLTLTVEDYVNAMETLVNDYRFTVYNICYKRILVCWILF
AFTVLLALLFSGLQGVALFALGVGWLFLNAAAIFLCMWVKLRLSRGLEKC
LARVNRQLMRHKILLVLDDRGRISCHKVNLCFMYFDATQCVNFLNEFLEH
TEQTGGDAIKAGWEAKLDIDLNDIVIQGSQPVRMPRKQAVAQELFLSYLQ
RWGKDFLRRRLDWTVQEAGVHETPRHLQSSICPCQYEEELLRNKIKISLQ
HRHCCGINCMGCWL*
BS11860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18507-PA | 514 | CG18507-PA | 1..514 | 1..514 | 2712 | 100 | Plus |
| CG18507-PE | 510 | CG18507-PE | 1..494 | 1..499 | 2375 | 92.4 | Plus |
| CG18507-PB | 513 | CG18507-PB | 1..499 | 1..507 | 2372 | 91.3 | Plus |
| CG18507-PD | 510 | CG18507-PD | 1..489 | 1..494 | 2370 | 93.3 | Plus |
| CG18507-PC | 499 | CG18507-PC | 1..489 | 1..494 | 2370 | 93.3 | Plus |
