Clone Sequence Records
BS11862.3prime Sequence
405 bp (405 high quality bases) assembled on 2006-06-16
> BS11862.3prime
ATGGTCTAGAAAGCTTCTAATTAACGCCCTGGATGAATTTTGAGAGGAAG
TCGGTGGGCTTGGGATCCTGCGATTCTTTCCAGTAGCGCATGATATGGCC
CTTCTGCTTCCAGATCTCCACGGATTCCTTAAGCTCCATTTGGCCCTTGA
TGACCAGCATGTCGATCACCCGGATGTCGGTCACATTGCGATGCTTGACG
AACTCCTCGCGCAGCTTGTCCCGACACTGCTCCACGGTCATGGGGATGTC
GTAGTCCATGACGATGTAGGGAATCTGGCGGTACCAGGCCTTGTACAGAT
TGAGGGCACGCTTACGGGCCTCCTCGCGGTCCACGGACAGGATGGGGCGC
ACCTGCTGTACGGCTCGCTTCACGGCTTCACGTCCGGCCATGTCGACTGA
TAACT
BS11862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-PA | 375 | CG7712-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-RB | 612 | CG7712-RB | 93..467 | 391..17 | 1875 | 100 | Minus |
| CG7712-RA | 542 | CG7712-RA | 93..467 | 391..17 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10897289..10897419 | 17..147 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 10897664..10897793 | 262..391 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 10897471..10897588 | 145..262 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:05:17 has no hits.
BS11862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:51 Download gff for
BS11862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:40 Download gff for
BS11862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 89..469 | 11..396 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:21 Download gff for
BS11862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 89..469 | 11..396 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:21 Download gff for
BS11862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10897284..10897417 | 11..145 | 97 | <- | Plus |
| 2R | 10897472..10897587 | 146..261 | 100 | <- | Plus |
| 2R | 10897664..10897797 | 262..396 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:40 Download gff for
BS11862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6784789..6784922 | 11..145 | 97 | <- | Plus |
| arm_2R | 6784977..6785092 | 146..261 | 100 | <- | Plus |
| arm_2R | 6785169..6785302 | 262..396 | 98 | | Plus |
BS11862.5prime Sequence
405 bp (405 high quality bases) assembled on 2006-06-16
> BS11862.5prime
GAAGTTATCAGTCGACATGGCCGGACGTGAAGCCGTGAAGCGAGCCGTAC
AGCAGGTGCGCCCCATCCTGTCCGTGGACCGCGAGGAGGCCCGTAAGCGT
GCCCTCAATCTGTACAAGGCCTGGTACCGCCAGATTCCCTACATCGTCAT
GGACTACGACATCCCCATGACCGTGGAGCAGTGTCGGGACAAGCTGCGCG
AGGAGTTCGTCAAGCATCGCAATGTGACCGACATCCGGGTGATCGACATG
CTGGTCATCAAGGGCCAAATGGAGCTTAAGGAATCCGTGGAGATCTGGAA
GCAGAAGGGCCATATCATGCGCTACTGGAAAGAATCGCAGGATCCCAAGC
CCACCGACTTCCTCTCAAAATTCATCCAGGGCGTTAATTAGAAGCTTTCT
AGACC
BS11862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-PA | 375 | CG7712-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-RB | 612 | CG7712-RB | 93..467 | 17..391 | 1875 | 100 | Plus |
| CG7712-RA | 542 | CG7712-RA | 93..467 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10897289..10897419 | 391..261 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 10897664..10897793 | 146..17 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 10897471..10897588 | 263..146 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:07:39 has no hits.
BS11862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:52 Download gff for
BS11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:07 Download gff for
BS11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 89..469 | 12..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:19 Download gff for
BS11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 89..469 | 12..397 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:19 Download gff for
BS11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10897284..10897417 | 263..397 | 97 | <- | Minus |
| 2R | 10897472..10897587 | 147..262 | 100 | <- | Minus |
| 2R | 10897664..10897797 | 12..146 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:07 Download gff for
BS11862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6784789..6784922 | 263..397 | 97 | <- | Minus |
| arm_2R | 6784977..6785092 | 147..262 | 100 | <- | Minus |
| arm_2R | 6785169..6785302 | 12..146 | 98 | | Minus |
BS11862.complete Sequence
407 bp assembled on 2006-11-01
GenBank Submission: FJ637001
> BS11862.complete
GAAGTTATCAGTCGACATGGCCGGACGTGAAGCCGTGAAGCGAGCCGTAC
AGCAGGTGCGCCCCATCCTGTCCGTGGACCGCGAGGAGGCCCGTAAGCGT
GCCCTCAATCTGTACAAGGCCTGGTACCGCCAGATTCCCTACATCGTCAT
GGACTACGACATCCCCATGACCGTGGAGCAGTGTCGGGACAAGCTGCGCG
AGGAGTTCGTCAAGCATCGCAATGTGACCGACATCCGGGTGATCGACATG
CTGGTCATCAAGGGCCAAATGGAGCTTAAGGAATCCGTGGAGATCTGGAA
GCAGAAGGGCCATATCATGCGCTACTGGAAAGAATCGCAGGATCCCAAGC
CCACCGACTTCCTCTCAAAATTCATCCAGGGCGTTAATTAGAAGCTTTCT
AGACCAT
BS11862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-RB | 375 | CG7712-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
| CG7712-RA | 375 | CG7712-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-RB | 612 | CG7712-RB | 93..467 | 17..391 | 1875 | 100 | Plus |
| CG7712-RA | 542 | CG7712-RA | 93..467 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10897289..10897419 | 391..261 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 10897664..10897793 | 146..17 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 10897471..10897588 | 263..146 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:33 has no hits.
BS11862.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:24 Download gff for
BS11862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:16 Download gff for
BS11862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 87..467 | 12..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:20 Download gff for
BS11862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 93..467 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:25 Download gff for
BS11862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 87..467 | 12..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:18 Download gff for
BS11862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 93..467 | 17..391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:18 Download gff for
BS11862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10897289..10897417 | 263..391 | 100 | <- | Minus |
| 2R | 10897472..10897587 | 147..262 | 100 | <- | Minus |
| 2R | 10897664..10897793 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:20 Download gff for
BS11862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6784794..6784922 | 263..391 | 100 | <- | Minus |
| arm_2R | 6784977..6785092 | 147..262 | 100 | <- | Minus |
| arm_2R | 6785169..6785298 | 17..146 | 100 | | Minus |
BS11862.pep Sequence
Translation from 16 to 390
> BS11862.pep
MAGREAVKRAVQQVRPILSVDREEARKRALNLYKAWYRQIPYIVMDYDIP
MTVEQCRDKLREEFVKHRNVTDIRVIDMLVIKGQMELKESVEIWKQKGHI
MRYWKESQDPKPTDFLSKFIQGVN*
BS11862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-PB | 124 | CG7712-PB | 1..124 | 1..124 | 647 | 100 | Plus |
| CG7712-PA | 124 | CG7712-PA | 1..124 | 1..124 | 647 | 100 | Plus |
