BS11864.complete Sequence
1370 bp assembled on 2006-11-01
GenBank Submission: FJ637003
> BS11864.complete
GAAGTTATCAGTCGACATGCCACGCATCTCGTTGCCCGGCAGCAGCCTGC
TGGTAGTCCTGGCACTGATCCTGTGCCTCAGCCTTCCAATCCGGGCGGTG
CCCACCTCCGTGCTCGCCCAAGACACGGAGCTCTCCACCAGCGCCAACCA
CAAGCTCCAGCAGCAGCAGCAACAGCAGCAGCAGCATCACCAGCAGCAGC
AGCTCCAGCAGCAGCAGCAGCAGCAACAGCCGGCCACAGCCAAACGCTCC
GAGGAGGCGAGTGCCGTGCCCACGGCGGACAAGAAGTCGAGTCCGGAAAT
TGTGCCCGCTTCCTTTAGCAACGCTCCGTCGGCCCGAAACAGCCCAGTTC
CGGTCTCCAGCCAGCAGCAGGAGCAGCAGCAGGTGCCGTCCGGAGTCTAC
GCCCTGCCCTCCAACGAGGAGATCCTGGCCGCCGTAGCGGCCGCCGCCCA
GAACAGCCAACAGCAGTTGCAGGAGGAGCCCTCCGCCCTGGAGGAGGCGG
TGGCCAGCTCCACGATGCGCAAGCGGGGCATCAATTACGAGTACAATCCG
TACTCCGTCGCCTCCAGCGACTACGGCAGCGATGTGCCCAGTGGCGTTTG
GTCCGACGACTACGAGGCCGCCGTTCCTGTCAGCTATGGCGAGCGGGATC
TCCAGGAGATCGATGACTACGTGCCAGAGCGAAGAGTGAGTAGCTCGAGT
GCGCGAAACAAGGCCTACGACAATTTGCAGAATCTCCTGAACGCCGAGGC
CTATCTGGAGAGCATTCCCCTCTCGGTGCCGCTGACCTATGCCAATCGGA
ACTACAACGTGGATGAGCGCAACAAGCGGGGTATCTACTACAACGTGGGC
ACTCCCGGCGGCAATGGGGCGAGCAGCCTGGGCAGTGGAAGTGGCTACAA
CGACGAGGGTATCAACCTCAACAAATATCGACGATTCAACGACATGCGAC
TTAAACGCGACACCCAGCTCAATCCCGCCGACATGCTGGCCCTGGTTGCC
CTGGTGGAGGCCGGAGAACGGGCGCGCAAGGAGAGCGATGCTGAGAGCTC
CGGACCGGTGCCCATGATACCCTCCGATGACCTGGACTACGCGCCCGCCG
GCAGCTGGTTCGACGTGCCCGTACAGGCGGACTACTACGGCGCCGGAGTG
CCGCTGGACAACCAGAACCAGGCGATGCCCAAGTACGAGTACGTGCCGCG
TCAGCACAAGTACAGCGGAGTCAATAGCCGATTCGGCTCCTCGAAGCAGC
GCTACATGGTGGCCAAGAAGAAGCGCTCGGTGAACCAGAGCCAATTCATG
AACGAACCGGTGGCGGAGCGCGGATCCGGCTACAATGGCGAGAAGTACTT
CTAAAAGCTTTCTAGACCAT
BS11864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4577-RA | 1338 | CG4577-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
| CG4577-RB | 1341 | CG4577-PB | 1..1341 | 17..1354 | 6625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4577-RA | 2536 | CG4577-RA | 165..1504 | 15..1354 | 6700 | 100 | Plus |
| CG4577-RB | 2707 | CG4577-RB | 165..1507 | 15..1354 | 6635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1138618..1139067 | 237..686 | 2250 | 100 | Plus |
| 2L | 23513712 | 2L | 1139482..1139764 | 948..1230 | 1415 | 100 | Plus |
| 2L | 23513712 | 2L | 1139122..1139385 | 685..948 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 1134857..1135081 | 15..239 | 1125 | 100 | Plus |
| 2L | 23513712 | 2L | 1139832..1139956 | 1230..1354 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:48:26 has no hits.
BS11864.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:49 Download gff for
BS11864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4577-RA | 1..1338 | 17..1354 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:59 Download gff for
BS11864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4577-RA | 152..1495 | 11..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:49 Download gff for
BS11864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4577-RA | 167..1502 | 17..1352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:50 Download gff for
BS11864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4577-RA | 152..1495 | 11..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:23 Download gff for
BS11864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4577-RA | 167..1502 | 17..1352 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:23 Download gff for
BS11864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1134859..1135081 | 17..239 | 100 | -> | Plus |
| 2L | 1138621..1139067 | 240..686 | 100 | -> | Plus |
| 2L | 1139124..1139385 | 687..948 | 100 | -> | Plus |
| 2L | 1139483..1139763 | 949..1229 | 100 | -> | Plus |
| 2L | 1139832..1139954 | 1230..1352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:49 Download gff for
BS11864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1134859..1135081 | 17..239 | 100 | -> | Plus |
| arm_2L | 1138621..1139067 | 240..686 | 100 | -> | Plus |
| arm_2L | 1139124..1139385 | 687..948 | 100 | -> | Plus |
| arm_2L | 1139483..1139763 | 949..1229 | 100 | -> | Plus |
| arm_2L | 1139832..1139954 | 1230..1352 | 100 | | Plus |
BS11864.pep Sequence
Translation from 16 to 1353
> BS11864.pep
MPRISLPGSSLLVVLALILCLSLPIRAVPTSVLAQDTELSTSANHKLQQQ
QQQQQQHHQQQQLQQQQQQQQPATAKRSEEASAVPTADKKSSPEIVPASF
SNAPSARNSPVPVSSQQQEQQQVPSGVYALPSNEEILAAVAAAAQNSQQQ
LQEEPSALEEAVASSTMRKRGINYEYNPYSVASSDYGSDVPSGVWSDDYE
AAVPVSYGERDLQEIDDYVPERRVSSSSARNKAYDNLQNLLNAEAYLESI
PLSVPLTYANRNYNVDERNKRGIYYNVGTPGGNGASSLGSGSGYNDEGIN
LNKYRRFNDMRLKRDTQLNPADMLALVALVEAGERARKESDAESSGPVPM
IPSDDLDYAPAGSWFDVPVQADYYGAGVPLDNQNQAMPKYEYVPRQHKYS
GVNSRFGSSKQRYMVAKKKRSVNQSQFMNEPVAERGSGYNGEKYF*
BS11864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4577-PA | 445 | CG4577-PA | 1..445 | 1..445 | 2274 | 100 | Plus |
| CG4577-PB | 446 | CG4577-PB | 1..446 | 1..445 | 2255 | 99.6 | Plus |
