Clone Sequence Records
BS11869.3prime Sequence
564 bp (564 high quality bases) assembled on 2006-06-16
> BS11869.3prime
ATGGTCTAGAAAGCTTCTACTGGAAGTAGGTCCTGGGCTTCCTGAACGAG
AACAGTTTCCTGTTGCCCTTGTGGTGGACACGCTGGACCAGAGGGAACTT
GATCTTTGAATCGTGGAACTGCTTCACGTGCACGCGGCGGGTCTTGGCGG
CAGGGATCGAGTCCACCTTAATGATCTGGATGGAGTGGGCACGGGCACGG
TGGCGGGCTCCCATGTCGCGGTAGCACTGAGTGACGGCACCGCCGACAGT
CAGGTCACGGTACTCGCGGTACATGTTGTGGGTGCCCGAGCGGGAATCGT
AACGCAGCCAGATGCCGAAGTTCTTGATCTTCACGGGCGACGTCTCGTAC
ACCTGCTTGATGGACACGATCTCGCCGGTGGTCTTCTTGAACTTCTTCAG
TTGGCGCAGGAAGTACCAGAAGCGGGATTTGGCCACGATGTTGTCGGGGG
CAAAGATGCGCATCTTGTAGAGGGGAGTCTGGGGCTCCTTCTCGCTGGGC
AGCTTGCGGCCCACGACCTCGTACTCCTTCAACAATCCCTTGGCTCTCAT
GTCGACTGATAACT
BS11869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6510-PA | 534 | RpL18A-RA | 1..534 | 550..17 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 635 | CG6510-RA | 35..570 | 552..17 | 2680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17546471..17546987 | 17..533 | 2585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:55 has no hits.
BS11869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:53 Download gff for
BS11869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6510-PA | 1..534 | 17..550 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:59 Download gff for
BS11869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..576 | 8..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:57 Download gff for
BS11869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..576 | 8..552 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:57 Download gff for
BS11869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17546465..17546986 | 8..532 | 99 | <- | Plus |
| 2R | 17547409..17547428 | 533..552 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:59 Download gff for
BS11869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13433970..13434491 | 8..532 | 99 | <- | Plus |
| arm_2R | 13434914..13434933 | 533..552 | 100 | | Plus |
BS11869.5prime Sequence
564 bp (564 high quality bases) assembled on 2006-06-16
> BS11869.5prime
GAAGTTATCAGTCGACATGAGAGCCAAGGGATTGTTGAAGGAGTACGAGG
TCGTGGGCCGCAAGCTGCCCAGCGAGAAGGAGCCCCAGACTCCCCTCTAC
AAGATGCGCATCTTTGCCCCCGACAACATCGTGGCCAAATCCCGCTTCTG
GTACTTCCTGCGCCAACTGAAGAAGTTCAAGAAGACCACCGGCGAGATCG
TGTCCATCAAGCAGGTGTACGAGACGTCGCCCGTGAAGATCAAGAACTTC
GGCATCTGGCTGCGTTACGATTCCCGCTCGGGCACCCACAACATGTACCG
CGAGTACCGTGACCTGACTGTCGGCGGTGCCGTCACTCAGTGCTACCGCG
ACATGGGAGCCCGCCACCGTGCCCGTGCCCACTCCATCCAGATCATTAAG
GTGGACTCGATCCCTGCCGCCAAGACCCGCCGCGTGCACGTGAAGCAGTT
CCACGATTCAAAGATCAAGTTCCCTCTGGTCCAGCGTGTCCACCACAAGG
GCAACAGGAAACTGTTCTCGTTCAGGAAGCCCAGGACCTACTTCCAGTAG
AAGCTTTCTAGACC
BS11869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6510-PA | 534 | RpL18A-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 635 | CG6510-RA | 35..570 | 15..550 | 2680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17546471..17546987 | 550..34 | 2585 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:05:38 has no hits.
BS11869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:54 Download gff for
BS11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6510-PA | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:48 Download gff for
BS11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..576 | 15..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:26 Download gff for
BS11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..576 | 15..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:26 Download gff for
BS11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17546465..17546986 | 35..559 | 99 | <- | Minus |
| 2R | 17547409..17547428 | 15..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:48 Download gff for
BS11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13433970..13434491 | 35..559 | 99 | <- | Minus |
| arm_2R | 13434914..13434933 | 15..34 | 100 | | Minus |
BS11869.complete Sequence
566 bp assembled on 2006-11-01
GenBank Submission: FJ637005
> BS11869.complete
GAAGTTATCAGTCGACATGAGAGCCAAGGGATTGTTGAAGGAGTACGAGG
TCGTGGGCCGCAAGCTGCCCAGCGAGAAGGAGCCCCAGACTCCCCTCTAC
AAGATGCGCATCTTTGCCCCCGACAACATCGTGGCCAAATCCCGCTTCTG
GTACTTCCTGCGCCAACTGAAGAAGTTCAAGAAGACCACCGGCGAGATCG
TGTCCATCAAGCAGGTGTACGAGACGTCGCCCGTGAAGATCAAGAACTTC
GGCATCTGGCTGCGTTACGATTCCCGCTCGGGCACCCACAACATGTACCG
CGAGTACCGTGACCTGACTGTCGGCGGTGCCGTCACTCAGTGCTACCGCG
ACATGGGAGCCCGCCACCGTGCCCGTGCCCACTCCATCCAGATCATTAAG
GTGGACTCGATCCCTGCCGCCAAGACCCGCCGCGTGCACGTGAAGCAGTT
CCACGATTCAAAGATCAAGTTCCCTCTGGTCCAGCGTGTCCACCACAAGG
GCAACAGGAAACTGTTCTCGTTCAGGAAGCCCAGGACCTACTTCCAGTAG
AAGCTTTCTAGACCAT
BS11869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 534 | CG6510-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 635 | CG6510-RA | 35..570 | 15..550 | 2680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17546471..17546987 | 550..34 | 2585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:38:36 has no hits.
BS11869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:19 Download gff for
BS11869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:05 Download gff for
BS11869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 67..608 | 15..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:53 Download gff for
BS11869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 37..570 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:19 Download gff for
BS11869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 67..608 | 15..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:32 Download gff for
BS11869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 37..570 | 17..550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:32 Download gff for
BS11869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17546471..17546986 | 35..550 | 100 | <- | Minus |
| 2R | 17547409..17547426 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:53 Download gff for
BS11869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13433976..13434491 | 35..550 | 100 | <- | Minus |
| arm_2R | 13434914..13434931 | 17..34 | 100 | | Minus |
BS11869.pep Sequence
Translation from 16 to 549
> BS11869.pep
MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQ
LKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDL
TVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKI
KFPLVQRVHHKGNRKLFSFRKPRTYFQ*
BS11869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-PA | 177 | CG6510-PA | 1..177 | 1..177 | 932 | 100 | Plus |
