Clone BS11870 Report

Search the DGRC for BS11870

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:118
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG15382-RA
Protein status:BS11870.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11870.3prime Sequence

504 bp (504 high quality bases) assembled on 2006-06-16

> BS11870.3prime
ATGGTCTAGAAAGCTTTTAGATAAACTCCTGATTGTCCAAAAACTCTCGA
ATCATATTTCTGCAGGACTTAAGCAAGGTCCTGTTGCAGTTTCGCTCCTT
ACTGGGAATTGGAGTCCTCGTCTTGGCCTTGACTATCGACTTGTTGCTCA
CTGAAGTCTCGGATTTGGCCGGAGTCAGGGATCTGCGGAGGATGTGCGAT
GGTATGGAGCGCTTCTTCAGCGGCTGGCTGGCGACTGGCGGACGAACAGT
CTGATCTTTTGGCGTCGTGTTGTCAGCAACTGCCGGCGGTGGAGTCGGGG
AACAGGACTCCGTGTAGGTTATAATGTTATTGCACACTTGTCGATCGTAT
TGGTAGCGGAGCAACAAGAGAGCCGCAGCCGCCTCCAGTTCCAGAGCACT
GTGGTTGGCCATGGCTACGTCGGCTGCGTCGGAATCTCTTACTGGCGAGG
GAGTCGCCTGTTTGCGTTTATTCAACATGCGGTACTTCATGTCGACTGAT
AACT

BS11870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-PA 474 CG15382-RA 1..474 490..17 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-RA 1038 CG15382-RA 30..506 491..15 2385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2155782..2156258 491..15 2385 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:06:39 has no hits.

BS11870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:54 Download gff for BS11870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15382-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:02 Download gff for BS11870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 21..506 15..498 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:26 Download gff for BS11870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 21..506 15..498 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:26 Download gff for BS11870.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2155773..2156258 15..498 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:02 Download gff for BS11870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2155773..2156258 15..498 99   Minus

BS11870.5prime Sequence

504 bp (504 high quality bases) assembled on 2006-06-16

> BS11870.5prime
GAAGTTATCAGTCGACATGAAGTACCGCATGTTGAATAAACGCAAACAGG
CGACTCCCTCGCCAGTAAGAGATTCCGACGCAGCCGACGTAGCCATGGCC
AACCACAGTGCTCTGGAACTGGAGGCGGCTGCGGCTCTCTTGTTGCTCCG
CTACCAATACGATCGACAAGTGTGCAATAACATTATAACCTACACGGAGT
CCTGTTCCCCGACTCCACCGCCGGCAGTTGCTGACAACACGACGCCAAAA
GATCAGACTGTTCGTCCGCCAGTCGCCAGCCAGCCGCTGAAGAAGCGCTC
CATACCATCGCACATCCTCCGCAGATCCCTGACTCCGGCCAAATCCGAGA
CTTCAGTGAGCAACAAGTCGATAGTCAAGGCCAAGACGAGGACTCCAATT
CCCAGTAAGGAGCGAAACTGCAACAGGACCTTGCTTAAGTCCTGCAGAAA
TATGATTCGAGAGTTTTTGGACAATCAGGAGTTTATCTAAAAGCTTTCTA
GACC

BS11870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-PA 474 CG15382-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-RA 1038 CG15382-RA 30..506 16..492 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2155782..2156258 16..492 2385 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:51 has no hits.

BS11870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:55 Download gff for BS11870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15382-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:19 Download gff for BS11870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 21..506 9..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:37 Download gff for BS11870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 21..506 9..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:37 Download gff for BS11870.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2155773..2156258 9..492 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:19 Download gff for BS11870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2155773..2156258 9..492 99   Plus

BS11870.complete Sequence

506 bp assembled on 2006-11-01

GenBank Submission: FJ637006

> BS11870.complete
GAAGTTATCAGTCGACATGAAGTACCGCATGTTGAATAAACGCAAACAGG
CGACTCCCTCGCCAGTAAGAGATTCCGACGCAGCCGACGTAGCCATGGCC
AACCACAGTGCTCTGGAACTGGAGGCGGCTGCGGCTCTCTTGTTGCTCCG
CTACCAATACGATCGACAAGTGTGCAATAACATTATAACCTACACGGAGT
CCTGTTCCCCGACTCCACCGCCGGCAGTTGCTGACAACACGACGCCAAAA
GATCAGACTGTTCGTCCGCCAGTCGCCAGCCAGCCGCTGAAGAAGCGCTC
CATACCATCGCACATCCTCCGCAGATCCCTGACTCCGGCCAAATCCGAGA
CTTCAGTGAGCAACAAGTCGATAGTCAAGGCCAAGACGAGGACTCCAATT
CCCAGTAAGGAGCGAAACTGCAACAGGACCTTGCTTAAGTCCTGCAGAAA
TATGATTCGAGAGTTTTTGGACAATCAGGAGTTTATCTAAAAGCTTTCTA
GACCAT

BS11870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-RA 474 CG15382-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-RA 1038 CG15382-RA 30..506 16..492 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2155782..2156258 16..492 2385 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:22:48 has no hits.

BS11870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:41 Download gff for BS11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:37 Download gff for BS11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 14..499 9..492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:02 Download gff for BS11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 31..502 17..488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:41 Download gff for BS11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 14..499 9..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:10 Download gff for BS11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 31..502 17..488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:10 Download gff for BS11870.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2155783..2156254 17..488 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:02 Download gff for BS11870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2155783..2156254 17..488 100   Plus

BS11870.pep Sequence

Translation from 16 to 489

> BS11870.pep
MKYRMLNKRKQATPSPVRDSDAADVAMANHSALELEAAAALLLLRYQYDR
QVCNNIITYTESCSPTPPPAVADNTTPKDQTVRPPVASQPLKKRSIPSHI
LRRSLTPAKSETSVSNKSIVKAKTRTPIPSKERNCNRTLLKSCRNMIREF
LDNQEFI*

BS11870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-PA 157 CG15382-PA 1..157 1..157 803 100 Plus