Clone Sequence Records
BS11870.3prime Sequence
504 bp (504 high quality bases) assembled on 2006-06-16
> BS11870.3prime
ATGGTCTAGAAAGCTTTTAGATAAACTCCTGATTGTCCAAAAACTCTCGA
ATCATATTTCTGCAGGACTTAAGCAAGGTCCTGTTGCAGTTTCGCTCCTT
ACTGGGAATTGGAGTCCTCGTCTTGGCCTTGACTATCGACTTGTTGCTCA
CTGAAGTCTCGGATTTGGCCGGAGTCAGGGATCTGCGGAGGATGTGCGAT
GGTATGGAGCGCTTCTTCAGCGGCTGGCTGGCGACTGGCGGACGAACAGT
CTGATCTTTTGGCGTCGTGTTGTCAGCAACTGCCGGCGGTGGAGTCGGGG
AACAGGACTCCGTGTAGGTTATAATGTTATTGCACACTTGTCGATCGTAT
TGGTAGCGGAGCAACAAGAGAGCCGCAGCCGCCTCCAGTTCCAGAGCACT
GTGGTTGGCCATGGCTACGTCGGCTGCGTCGGAATCTCTTACTGGCGAGG
GAGTCGCCTGTTTGCGTTTATTCAACATGCGGTACTTCATGTCGACTGAT
AACT
BS11870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15382-PA | 474 | CG15382-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15382-RA | 1038 | CG15382-RA | 30..506 | 491..15 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2155782..2156258 | 491..15 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:39 has no hits.
BS11870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:54 Download gff for
BS11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:02 Download gff for
BS11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 21..506 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:26 Download gff for
BS11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 21..506 | 15..498 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:26 Download gff for
BS11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2155773..2156258 | 15..498 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:02 Download gff for
BS11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2155773..2156258 | 15..498 | 99 | | Minus |
BS11870.5prime Sequence
504 bp (504 high quality bases) assembled on 2006-06-16
> BS11870.5prime
GAAGTTATCAGTCGACATGAAGTACCGCATGTTGAATAAACGCAAACAGG
CGACTCCCTCGCCAGTAAGAGATTCCGACGCAGCCGACGTAGCCATGGCC
AACCACAGTGCTCTGGAACTGGAGGCGGCTGCGGCTCTCTTGTTGCTCCG
CTACCAATACGATCGACAAGTGTGCAATAACATTATAACCTACACGGAGT
CCTGTTCCCCGACTCCACCGCCGGCAGTTGCTGACAACACGACGCCAAAA
GATCAGACTGTTCGTCCGCCAGTCGCCAGCCAGCCGCTGAAGAAGCGCTC
CATACCATCGCACATCCTCCGCAGATCCCTGACTCCGGCCAAATCCGAGA
CTTCAGTGAGCAACAAGTCGATAGTCAAGGCCAAGACGAGGACTCCAATT
CCCAGTAAGGAGCGAAACTGCAACAGGACCTTGCTTAAGTCCTGCAGAAA
TATGATTCGAGAGTTTTTGGACAATCAGGAGTTTATCTAAAAGCTTTCTA
GACC
BS11870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15382-PA | 474 | CG15382-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15382-RA | 1038 | CG15382-RA | 30..506 | 16..492 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2155782..2156258 | 16..492 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:51 has no hits.
BS11870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:55 Download gff for
BS11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:19 Download gff for
BS11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 21..506 | 9..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:37 Download gff for
BS11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 21..506 | 9..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:37 Download gff for
BS11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2155773..2156258 | 9..492 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:19 Download gff for
BS11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2155773..2156258 | 9..492 | 99 | | Plus |
BS11870.complete Sequence
506 bp assembled on 2006-11-01
GenBank Submission: FJ637006
> BS11870.complete
GAAGTTATCAGTCGACATGAAGTACCGCATGTTGAATAAACGCAAACAGG
CGACTCCCTCGCCAGTAAGAGATTCCGACGCAGCCGACGTAGCCATGGCC
AACCACAGTGCTCTGGAACTGGAGGCGGCTGCGGCTCTCTTGTTGCTCCG
CTACCAATACGATCGACAAGTGTGCAATAACATTATAACCTACACGGAGT
CCTGTTCCCCGACTCCACCGCCGGCAGTTGCTGACAACACGACGCCAAAA
GATCAGACTGTTCGTCCGCCAGTCGCCAGCCAGCCGCTGAAGAAGCGCTC
CATACCATCGCACATCCTCCGCAGATCCCTGACTCCGGCCAAATCCGAGA
CTTCAGTGAGCAACAAGTCGATAGTCAAGGCCAAGACGAGGACTCCAATT
CCCAGTAAGGAGCGAAACTGCAACAGGACCTTGCTTAAGTCCTGCAGAAA
TATGATTCGAGAGTTTTTGGACAATCAGGAGTTTATCTAAAAGCTTTCTA
GACCAT
BS11870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15382-RA | 474 | CG15382-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15382-RA | 1038 | CG15382-RA | 30..506 | 16..492 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2155782..2156258 | 16..492 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:48 has no hits.
BS11870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:41 Download gff for
BS11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:37 Download gff for
BS11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 14..499 | 9..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:02 Download gff for
BS11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 31..502 | 17..488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:41 Download gff for
BS11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 14..499 | 9..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:10 Download gff for
BS11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15382-RA | 31..502 | 17..488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:10 Download gff for
BS11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2155783..2156254 | 17..488 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:02 Download gff for
BS11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2155783..2156254 | 17..488 | 100 | | Plus |
BS11870.pep Sequence
Translation from 16 to 489
> BS11870.pep
MKYRMLNKRKQATPSPVRDSDAADVAMANHSALELEAAAALLLLRYQYDR
QVCNNIITYTESCSPTPPPAVADNTTPKDQTVRPPVASQPLKKRSIPSHI
LRRSLTPAKSETSVSNKSIVKAKTRTPIPSKERNCNRTLLKSCRNMIREF
LDNQEFI*
BS11870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15382-PA | 157 | CG15382-PA | 1..157 | 1..157 | 803 | 100 | Plus |